View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17241_low_21 (Length: 389)

Name: NF17241_low_21
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17241_low_21
NF17241_low_21
[»] chr3 (17 HSPs)
chr3 (41-335)||(40496779-40497073)
chr3 (41-335)||(41346053-41346347)
chr3 (41-328)||(51545675-51545962)
chr3 (41-327)||(48169738-48170024)
chr3 (41-335)||(54014243-54014537)
chr3 (36-335)||(50676481-50676778)
chr3 (69-330)||(24709021-24709282)
chr3 (43-306)||(48737561-48737824)
chr3 (41-206)||(13542792-13542957)
chr3 (202-335)||(12568169-12568302)
chr3 (202-335)||(13544633-13544766)
chr3 (57-210)||(30462801-30462952)
chr3 (234-335)||(30459812-30459913)
chr3 (39-74)||(48169722-48169757)
chr3 (41-74)||(12568275-12568308)
chr3 (41-74)||(13544739-13544772)
chr3 (293-330)||(16338973-16339010)
[»] chr4 (25 HSPs)
chr4 (41-335)||(40071449-40071743)
chr4 (41-335)||(54438157-54438451)
chr4 (41-335)||(37064753-37065047)
chr4 (41-324)||(39788009-39788293)
chr4 (41-335)||(17493759-17494053)
chr4 (41-330)||(925136-925425)
chr4 (41-335)||(34408657-34408951)
chr4 (41-337)||(20789677-20789972)
chr4 (41-326)||(47199501-47199786)
chr4 (44-312)||(33800786-33801053)
chr4 (41-335)||(21240332-21240626)
chr4 (72-337)||(32217968-32218233)
chr4 (72-281)||(52101108-52101317)
chr4 (89-306)||(53509690-53509907)
chr4 (72-318)||(3172051-3172296)
chr4 (72-318)||(46870630-46870874)
chr4 (78-318)||(28910195-28910434)
chr4 (36-181)||(51744514-51744659)
chr4 (214-335)||(51744657-51744778)
chr4 (76-318)||(41555485-41555720)
chr4 (41-157)||(10441517-10441631)
chr4 (234-335)||(10441149-10441251)
chr4 (42-210)||(28689666-28689829)
chr4 (234-335)||(28690088-28690188)
chr4 (72-112)||(35029154-35029194)
[»] chr2 (22 HSPs)
chr2 (38-335)||(29193994-29194291)
chr2 (41-335)||(2110226-2110520)
chr2 (41-335)||(43370680-43370974)
chr2 (41-335)||(45080420-45080712)
chr2 (41-335)||(28585683-28585977)
chr2 (58-335)||(4828106-4828383)
chr2 (41-316)||(8381316-8381591)
chr2 (42-304)||(1779073-1779335)
chr2 (72-318)||(42846942-42847184)
chr2 (72-229)||(9370486-9370643)
chr2 (75-258)||(43377242-43377423)
chr2 (149-306)||(39646437-39646591)
chr2 (37-210)||(31921617-31921788)
chr2 (41-145)||(30422588-30422692)
chr2 (76-202)||(16970295-16970419)
chr2 (36-156)||(25898766-25898885)
chr2 (234-337)||(31922032-31922135)
chr2 (212-305)||(16964852-16964945)
chr2 (64-161)||(39646327-39646426)
chr2 (234-335)||(25898469-25898570)
chr2 (69-120)||(27922606-27922657)
chr2 (34-74)||(43370667-43370707)
[»] scaffold0519 (1 HSPs)
scaffold0519 (41-335)||(10593-10887)
[»] chr8 (14 HSPs)
chr8 (41-335)||(11254506-11254800)
chr8 (41-335)||(17493532-17493826)
chr8 (41-330)||(27820784-27821073)
chr8 (41-335)||(18575034-18575328)
chr8 (44-330)||(38069898-38070184)
chr8 (41-335)||(39906917-39907208)
chr8 (41-314)||(12738366-12738639)
chr8 (64-318)||(17335994-17336247)
chr8 (41-335)||(9753776-9754069)
chr8 (36-313)||(13243543-13243818)
chr8 (41-210)||(11147782-11147949)
chr8 (234-326)||(11146785-11146877)
chr8 (75-121)||(5878176-5878222)
chr8 (75-120)||(29638412-29638457)
[»] chr7 (19 HSPs)
chr7 (41-327)||(4040961-4041247)
chr7 (41-335)||(40232115-40232409)
chr7 (58-335)||(29737411-29737688)
chr7 (41-324)||(6392288-6392571)
chr7 (41-335)||(27596086-27596379)
chr7 (41-335)||(25943649-25943939)
chr7 (49-330)||(31689361-31689642)
chr7 (41-350)||(41427648-41427955)
chr7 (58-326)||(24300171-24300429)
chr7 (89-335)||(38276593-38276839)
chr7 (75-335)||(21442834-21443092)
chr7 (103-318)||(48838082-48838296)
chr7 (41-210)||(22338101-22338268)
chr7 (50-210)||(22619883-22620041)
chr7 (234-335)||(22337716-22337818)
chr7 (250-328)||(22619537-22619615)
chr7 (39-102)||(7380533-7380596)
chr7 (41-74)||(4040947-4040980)
chr7 (36-76)||(42834518-42834558)
[»] chr5 (9 HSPs)
chr5 (41-335)||(36982192-36982486)
chr5 (41-308)||(42897374-42897641)
chr5 (41-335)||(14044062-14044355)
chr5 (41-335)||(2970666-2970958)
chr5 (41-206)||(36767876-36768039)
chr5 (55-207)||(33404365-33404515)
chr5 (41-157)||(5712600-5712716)
chr5 (234-335)||(33403200-33403301)
chr5 (234-335)||(36768782-36768883)
[»] chr1 (15 HSPs)
chr1 (41-335)||(46862562-46862856)
chr1 (39-324)||(50777014-50777299)
chr1 (41-350)||(1929217-1929523)
chr1 (44-337)||(39150900-39151193)
chr1 (41-335)||(28036700-28036995)
chr1 (41-335)||(32045839-32046133)
chr1 (76-335)||(38321651-38321910)
chr1 (45-335)||(46370933-46371217)
chr1 (35-335)||(8229069-8229370)
chr1 (41-318)||(1207452-1207727)
chr1 (41-318)||(40562436-40562711)
chr1 (41-314)||(9129401-9129675)
chr1 (128-314)||(38817801-38817984)
chr1 (212-297)||(47603744-47603828)
chr1 (72-120)||(9590625-9590673)
[»] scaffold0047 (2 HSPs)
scaffold0047 (41-335)||(69759-70053)
scaffold0047 (41-74)||(69753-69786)
[»] chr6 (13 HSPs)
chr6 (41-327)||(28541587-28541873)
chr6 (56-330)||(29182602-29182876)
chr6 (41-327)||(12350286-12350572)
chr6 (41-335)||(1241115-1241408)
chr6 (41-335)||(16435785-16436075)
chr6 (41-335)||(30736425-30736719)
chr6 (43-335)||(13041978-13042268)
chr6 (72-335)||(7271109-7271373)
chr6 (41-318)||(31013495-31013772)
chr6 (93-335)||(1870539-1870780)
chr6 (64-288)||(13210397-13210618)
chr6 (72-314)||(31833622-31833838)
chr6 (41-74)||(28541854-28541887)
[»] scaffold0061 (1 HSPs)
scaffold0061 (41-328)||(10017-10304)
[»] scaffold0532 (1 HSPs)
scaffold0532 (41-321)||(3834-4114)
[»] scaffold0318 (1 HSPs)
scaffold0318 (39-335)||(16363-16646)
[»] scaffold0016 (2 HSPs)
scaffold0016 (41-220)||(92169-92348)
scaffold0016 (295-327)||(92374-92406)
[»] scaffold1194 (1 HSPs)
scaffold1194 (41-316)||(1004-1267)


Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 41 - 335
Target Start/End: Complemental strand, 40497073 - 40496779
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || |||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40497073 tactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 40496974  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  40496973 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 40496874  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||    
T  40496873 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcaaggacggag 40496779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 41 - 335
Target Start/End: Complemental strand, 41346347 - 41346053
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| |||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||  || ||||||||||||||||||    
T  41346347 tactccctccgtccctgaataagtgacatatttgactatttcacacagattaagaaaagtgtaaagatgaaagaaagtaagtgatacttttactgagttg 41346248  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41346247 cccttgtcattattttaaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 41346148  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  41346147 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcagggacggag 41346053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 41 - 328
Target Start/End: Complemental strand, 51545962 - 51545675
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||| ||||||| ||||||||||||| ||||||| ||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  51545962 tactctctccgtccctgaataagtgacctatttgatcatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 51545863  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  51545862 cccttgtcattattttgaaactttttcacttttaagtaatgattactttttttgttccactacaaactttaacatggggaccacaaaaagtatttataag 51545763  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagg 328  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  51545762 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcagg 51545675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 41 - 327
Target Start/End: Complemental strand, 48170024 - 48169738
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || |||||||||| ||||||||||||||||| | |||||||||||||||||||| |||||||||||| |||||| |||||||| ||    
T  48170024 tactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatactattactgagctg 48169925  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  48169924 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 48169825  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcag 327  Q
    || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48169824 ggataaatctgtcaaattttgcttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcag 48169738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 41 - 335
Target Start/End: Complemental strand, 54014537 - 54014243
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||| ||| || ||||||| || ||||||||||||||||| | |||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  54014537 tactccctctgtcccttaataagtaacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttactgagttg 54014438  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  54014437 cccttatcattattttgaaactttttcacttttaagtaataattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 54014338  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  54014337 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcagggacggag 54014243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 36 - 335
Target Start/End: Complemental strand, 50676778 - 50676481
Alignment:
Q  36 attactactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactg 135  Q
    |||| ||||||||||||| || |||||||||| ||||||||||||||||| | |||||||||||||||||||| |||||||||||| |||| ||||||||    
T  50676778 attagtactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatatttttactg 50676679  T
Q  136 agttgcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtattt 235  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  50676678 agttgcc-ttgtcattattttaaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggg-accacaaaaagtattt 50676581  T
Q  236 ataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  50676580 ataaggggtaaatctgtcaaattttgcttaaaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcagggacggag 50676481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 69 - 330
Target Start/End: Complemental strand, 24709282 - 24709021
Alignment:
Q  69 tatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttca 168  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  24709282 tatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttgtcattattttgaaattttttca 24709183  T
Q  169 cttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaa 268  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||| || |||||||||||||||||| ||| ||    
T  24709182 cttttaagtaatgattactttctttgtttcactacaaactttaacatgaggaccacaaaaagtatttataaaggataaatctgtcaaattttgcttataa 24709083  T
Q  269 atctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcaggga 330  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  24709082 atctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcaggga 24709021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 43 - 306
Target Start/End: Complemental strand, 48737824 - 48737561
Alignment:
Q  43 ctccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcc 142  Q
    |||||||||||  | ||||  |||| || ||||| |||||||| | ||||||||||||||| |||||||||||||| |  |||| ||||||||| |||||    
T  48737824 ctccctccgtccttcaatacttgacctacttgacaatttcacacagattaagaaaagtgtagagatgaaagaaagaaaatgatatttttactgaattgcc 48737725  T
Q  143 cttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggg 242  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  48737724 cttgtcattattttgaaactttttcacttttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttataaagg 48737625  T
Q  243 gtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatatttttt 306  Q
    |||||| ||||||||| || ||| |||||||| ||| |||||||||||  ||||||||||||||    
T  48737624 gtaaatttgtcaaattctgcttaaaaatctgaaaagatcaagtattataagacaaatatttttt 48737561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 41 - 206
Target Start/End: Original strand, 13542792 - 13542957
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    |||||| |||||| ||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  13542792 tactccatccgtccctgaataagtgacctatttgaccatttcatatagattaagaaaagtgtaaagatgaaagaaagagattgatacttttactgagttg 13542891  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaa 206  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||    
T  13542892 cccttgtcattattttaaaactttttcacttttaagtaatgattactttctttgtttcgctacaaa 13542957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 202 - 335
Target Start/End: Original strand, 12568169 - 12568302
Alignment:
Q  202 acaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatat 301  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||    
T  12568169 acaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaagtcaagtattgtgggacaaatat 12568268  T
Q  302 tttttacaaataggtcacttattcagggatggag 335  Q
    |||||||||||| |||||||||||||||| ||||    
T  12568269 tttttacaaatatgtcacttattcagggacggag 12568302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 202 - 335
Target Start/End: Original strand, 13544633 - 13544766
Alignment:
Q  202 acaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatat 301  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||    
T  13544633 acaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaagtcaagtattgtgggacaaatat 13544732  T
Q  302 tttttacaaataggtcacttattcagggatggag 335  Q
    |||||||||||| |||||||||||||||| ||||    
T  13544733 tttttacaaatatgtcacttattcagggacggag 13544766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 57 - 210
Target Start/End: Complemental strand, 30462952 - 30462801
Alignment:
Q  57 gaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattatttt 156  Q
    ||||||||||  || |||||||||||||| | |||||||||||| ||||||||||||||| |||| |||| ||||||||| |||||||| | ||||||||    
T  30462952 gaataagtgatctacttgaccatttcacacagattaagaaaagtataaagatgaaagaaatagagtgatatttttactgaattgcccttattattatttt 30462853  T
Q  157 gaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 210  Q
     ||||   ||||||||||| |||| ||||||||  |||||||||||||||||||    
T  30462852 taaac--cttcacttttaaataataattactttaattgttccactacaaacttt 30462801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 30459913 - 30459812
Alignment:
Q  234 ttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatgg 333  Q
    ||||||||||||||  |||||||||||| ||  |||| |||||||||||||||||  ||||||| | |||||||||||||||||||||||||||||| ||    
T  30459913 ttataaggggtaaaattgtcaaattttgctttaaaatttgagaaggtcaagtatttagggacaatttttttttacaaataggtcacttattcagggacgg 30459814  T
Q  334 ag 335  Q
    ||    
T  30459813 ag 30459812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 48169722 - 48169757
Alignment:
Q  39 actactccctccgtctctgaataagtgacatatttg 74  Q
    ||||||||||||||||||||||||||||| ||||||    
T  48169722 actactccctccgtctctgaataagtgacctatttg 48169757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 12568308 - 12568275
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttg 74  Q
    ||||||||||||| ||||||||||||||||||||    
T  12568308 tactccctccgtccctgaataagtgacatatttg 12568275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 13544772 - 13544739
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttg 74  Q
    ||||||||||||| ||||||||||||||||||||    
T  13544772 tactccctccgtccctgaataagtgacatatttg 13544739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 330
Target Start/End: Complemental strand, 16339010 - 16338973
Alignment:
Q  293 gacaaatattttttacaaataggtcacttattcaggga 330  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  16339010 gacaaatattttttacaaatatgtcacttatttaggga 16338973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 41 - 335
Target Start/End: Original strand, 40071449 - 40071743
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || |||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40071449 tactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 40071548  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  40071549 cccttgtcattattttgaaactttttcacttttaagcaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 40071648  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  40071649 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcagggacggag 40071743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 41 - 335
Target Start/End: Original strand, 54438157 - 54438451
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || |||||||||| |||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  54438157 tactccctccgtccctaaataagtgacctatttgaccatttcacaccgattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 54438256  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  54438257 cccttgtcattattttaaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 54438356  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  54438357 gggtaaatctgtcaaattttgcttagaaatctgagaagatcaagtattgtgggacaaatattttttacaaataggtcacttattcagggacggag 54438451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 41 - 335
Target Start/End: Original strand, 37064753 - 37065047
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    |||||| |||||| ||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37064753 tactccatccgtccctgaataagtgacctatttgatcatttcacatagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 37064852  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  37064853 cccttgtcatttttttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgaggaccacaaaaagtatttataag 37064952  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||    
T  37064953 gggtaaatatgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataagtcacttattcagggacggag 37065047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 41 - 324
Target Start/End: Complemental strand, 39788293 - 39788009
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    |||||||| |||| ||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39788293 tactcccttcgtccctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 39788194  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  39788193 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 39788094  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatatt-ttttacaaataggtcacttatt 324  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||| ||| ||||||||| ||||||||||||||||||||||    
T  39788093 gggtaaatctgtcaaattttgcttagaaatctgataaggtcaagtattgtggaacaaatatttttttacaaataggtcacttatt 39788009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 41 - 335
Target Start/End: Complemental strand, 17494053 - 17493759
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || |||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  17494053 tactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttattgagttg 17493954  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  17493953 cccttgtcattattttgaaactttttcacttttaagtaataattattttctttgttccactacaaactttaacatggggaccacaaaaagtttttataag 17493854  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||| ||||    
T  17493853 gggtaaatctgtcaaattttgcttagaaatctgagaagatcaagtattgtgagacaaatattttttacaaataggtcacttattcagggacggag 17493759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 41 - 330
Target Start/End: Original strand, 925136 - 925425
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || |||||||||| ||||||| ||||||||| | |||||||||||||||||||| ||||||| | || ||||||||||||||||||    
T  925136 tactccctccgtcccttaataagtgacttatttgatcatttcacacagattaagaaaagtgtaaagataaaagaaataaagtgatacttttactgagttg 925235  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  925236 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 925335  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcaggga 330  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||    
T  925336 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtaggataaatattttttacaaataggtcacttattcaggga 925425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 41 - 335
Target Start/End: Original strand, 34408657 - 34408951
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| ||||||||||||| |||||| |||||||||| | |||| |||||||||||||||||||||||||||  |||||||||| |||||||    
T  34408657 tactccctccgtccctgaataagtgacctatttggccatttcacacatattaggaaaagtgtaaagatgaaagaaagagaatgatacttttattgagttg 34408756  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||| ||| |||||||||||||||||||    
T  34408757 cccttgtcattattttgaaactttttcacttttaagtaatgattattttctttgttatactacaaactttaacatgtggaccacaaaaagtatttataag 34408856  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34408857 gggtaaatctgtcaaattttacctagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggacggag 34408951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 41 - 337
Target Start/End: Complemental strand, 20789972 - 20789677
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||  ||||||||||||  ||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  20789972 tactccctccgttcctgaataagtgatctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagctg 20789873  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20789872 cc-ttgtcattattttgaaactttttcacttttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 20789774  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggagag 337  Q
    || |||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||    
T  20789773 ggataaatctgtcaaattttacttagaaatctgagaagatcaagtattatgggacaaatattttttacaaatagatcatttattcagggacggagag 20789677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 41 - 326
Target Start/End: Complemental strand, 47199786 - 47199501
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||  ||||||||||||  ||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||| ||||| |||||||    
T  47199786 tactccctccgtacctgaataagtgatctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatatttttattgagttg 47199687  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  47199686 cccttgtcattattttaaaactttttcacttttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttatatg 47199587  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattca 326  Q
    |||||||||||| ||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  47199586 gggtaaatctgttaaattttgcctagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattca 47199501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 44 - 312
Target Start/End: Original strand, 33800786 - 33801053
Alignment:
Q  44 tccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgccc 143  Q
    |||||||||| ||||||||||||| ||||||||||||||||| | ||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  33800786 tccctccgtccctgaataagtgacctatttgaccatttcacacagattcagaaaagtgtaaagatggaagaaagagagtgatacttttactgagttgccc 33800885  T
Q  144 ttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataagggg 243  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| ||    
T  33800886 ttgtcatcattttgaaactttttcacttttaaataatgattactttctttgttccactacaaactttaatatggggaccac-aaaagtatttataagagg 33800984  T
Q  244 taaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaat 312  Q
    |||||||||||||||||  |||||||||||||||||||||||||||| | |||||||||||||||||||    
T  33800985 taaatctgtcaaattttacttagaaatctgagaaggtcaagtattatagaacaaatattttttacaaat 33801053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 41 - 335
Target Start/End: Complemental strand, 21240626 - 21240332
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| ||  |||  |||| || |||||||||||||| | ||||||||||||||| ||||||||||||||||  |||| ||||||||| |||    
T  21240626 tactccctccgtccctcgatacttgacctacttgaccatttcacacagattaagaaaagtgtagagatgaaagaaagagaatgatatttttactgaattg 21240527  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
     | |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  21240526 acattgtcactattttgaaactttttcatttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttatatg 21240427  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    |||||||||||||||||| |  |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||  |||| ||||| ||||    
T  21240426 gggtaaatctgtcaaattctacttagaagtctgagaaggtcaagtattatgggacaaatatttttttcaaataggtcaagtattgagggacggag 21240332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 72 - 337
Target Start/End: Original strand, 32217968 - 32218233
Alignment:
Q  72 ttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttcactt 171  Q
    |||||||||||||| | |||||||| |||||||||||||||||||||||   ||| ||||||||| | | ||||||||||||||||||||||||||||||    
T  32217968 ttgaccatttcacacagattaagaagagtgtaaagatgaaagaaagagaattatatttttactgaatagtccttgtcattattttgaaactttttcactt 32218067  T
Q  172 ttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatc 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| || ||| |||||    
T  32218068 ttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataaggggtaaatctgtcaaattctgcttaaaaatc 32218167  T
Q  272 tgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggagag 337  Q
    ||||||  ||||||||||| ||||||||||||||| ||||||||| |  |||| ||||| ||||||    
T  32218168 tgagaaaatcaagtattataggacaaatatttttttcaaataggtgaagtattgagggacggagag 32218233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 72 - 281
Target Start/End: Complemental strand, 52101317 - 52101108
Alignment:
Q  72 ttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttcactt 171  Q
    ||||| |||||||| | |||||||||||||||||||||||||||| | |  |||| ||||||||| |||| |||||||||||||||||| ||||||||||    
T  52101317 ttgactatttcacacagattaagaaaagtgtaaagatgaaagaaatataatgatatttttactgaattgcacttgtcattattttgaaattttttcactt 52101218  T
Q  172 ttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatc 271  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||| ||| |||||    
T  52101217 ttaagtaatggttattttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataaagggtaaatctgtcaaattttgcttataaatc 52101118  T
Q  272 tgagaaggtc 281  Q
    ||||||||||    
T  52101117 tgagaaggtc 52101108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 89 - 306
Target Start/End: Original strand, 53509690 - 53509907
Alignment:
Q  89 attaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttcacttttaagtaatgattactt 188  Q
    |||| ||||||||||||||||||||||| |||  |||| | ||||||| ||| | |||||||||||||||||||||||||||||||| ||||||||| ||    
T  53509690 attatgaaaagtgtaaagatgaaagaaaaagaatgatattgttactgaattgtcattgtcattattttgaaactttttcacttttaaataatgattattt 53509789  T
Q  189 tctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||| ||||||||| |  |||||||||||| |||||||| ||||    
T  53509790 tctttgttccactacaaattttaacatggggatcacaaaaagtatttataaggaataaatatgtcaaattctccttagaaatctgataaggtcaaatatt 53509889  T
Q  289 atgggacaaatatttttt 306  Q
     ||| |||||||||||||    
T  53509890 gtggaacaaatatttttt 53509907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 72 - 318
Target Start/End: Original strand, 3172051 - 3172296
Alignment:
Q  72 ttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtca-ttattttgaaactttttcact 170  Q
    |||||||||||||| | |||||||||| ||||||||||||| ||||| |  |||| ||||||||| ||| |||||| | |||||||||||| ||  ||||    
T  3172051 ttgaccatttcacacagattaagaaaaatgtaaagatgaaaaaaagataatgatatttttactgaattgtccttgttaattattttgaaacctt--cact 3172148  T
Q  171 tttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaat 270  Q
    |||||||||||||||||||||||||||||||||||||||| |||| | || ||||||||||||||||||  ||||||| ||||||||| || ||||||||    
T  3172149 tttaagtaatgattactttctttgttccactacaaacttttacattgagaccacaaaaagtatttataaaaggtaaatttgtcaaattctgcttagaaat 3172248  T
Q  271 ctgagaaggtcaagtattatgggacaaatattttttacaaataggtca 318  Q
     |||||| |||||||||| ||||||||||||||||| |||||||||||    
T  3172249 ttgagaaagtcaagtattgtgggacaaatatttttttcaaataggtca 3172296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 72 - 318
Target Start/End: Complemental strand, 46870874 - 46870630
Alignment:
Q  72 ttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttcactt 171  Q
    ||||| |||||||| | | ||| ||||||| || |||||||||||||||  |||| ||||||||| | | |||||| ||||||||||||| ||  |||||    
T  46870874 ttgacaatttcacacatagtaaaaaaagtgcaaggatgaaagaaagagaatgatatttttactgaatagtccttgttattattttgaaacctt--cactt 46870777  T
Q  172 ttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatc 271  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||| ||||||||| |  ||| |||||    
T  46870776 ttaagtaatgatgactttctttgttccactacaaacttttacatggggaccacaaaaagtatttataagggataaatttgtcaaattgtacttaaaaatc 46870677  T
Q  272 tgagaaggtcaagtattatgggacaaatattttttacaaataggtca 318  Q
    |||| |||||||||||| |||||||||||||||||  ||||||||||    
T  46870676 tgagcaggtcaagtattgtgggacaaatattttttctaaataggtca 46870630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 78 - 318
Target Start/End: Original strand, 28910195 - 28910434
Alignment:
Q  78 atttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttcacttttaagt 177  Q
    |||||||||| |||||||||| || ||||||||||||||||||  |||| ||||||||| ||| |||||| ||||||||||||| ||  |||||||||||    
T  28910195 atttcacatagattaagaaaaatgcaaagatgaaagaaagagaatgatatttttactgaattgtccttgttattattttgaaacctt--cacttttaagt 28910292  T
Q  178 aatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatctgagaa 277  Q
    ||||||||||||||||||||||||| ||||||| ||||||  | ||||||||||||||||||||||||||| ||||||||| || ||| |||||||||||    
T  28910293 aatgattactttctttgttccactagaaacttttacatggaaaccacaaaaagtatttataaggggtaaatttgtcaaattctgcttaaaaatctgagaa 28910392  T
Q  278 ggtcaagtattatgggacaaata-ttttttacaaataggtca 318  Q
    ||| || || | | | ||||||| |||||| |||||||||||    
T  28910393 ggttaaatactgtagaacaaatattttttttcaaataggtca 28910434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 36 - 181
Target Start/End: Original strand, 51744514 - 51744659
Alignment:
Q  36 attactactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactg 135  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||||||||||| | |||||||||||||||||||||  |||||||||| ||||||||||||     
T  51744514 attaatactctctccgtccctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgtgagaaagagagtgatacttttacta 51744613  T
Q  136 agttgcccttgtcattattttgaaactttttcacttttaagtaatg 181  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  51744614 agttgcccttgtcattattttgaaacttgttcacttttaagtaatg 51744659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 214 - 335
Target Start/End: Original strand, 51744657 - 51744778
Alignment:
Q  214 atggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaata 313  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  51744657 atggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatttgagaaggtcaagtattgtgggacaaatattttttacaaata 51744756  T
Q  314 ggtcacttattcagggatggag 335  Q
    ||||||||||| ||||| ||||    
T  51744757 ggtcacttatttagggacggag 51744778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 76 - 318
Target Start/End: Complemental strand, 41555720 - 41555485
Alignment:
Q  76 ccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttcacttttaa 175  Q
    |||||||||| | ||||||||||||||||||||||||||    ||  |||| ||||||||| ||| | ||   |||||||| |||| ||  |  ||||||    
T  41555720 ccatttcacacagattaagaaaagtgtaaagatgaaaga----gaatgatatttttactgaattgtcatt---attatttttaaaccttcacttttttaa 41555628  T
Q  176 gtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatctgag 275  Q
    ||||||||||||||||||||| ||||||||||||| |||| | || |||||||||||  |||||||||||||  |||||||||  | ||| |||| ||||    
T  41555627 gtaatgattactttctttgtttcactacaaacttttacatagagaccacaaaaagtaactataaggggtaaacttgtcaaattaagcttaaaaatttgag 41555528  T
Q  276 aaggtcaagtattatgggacaaatattttttacaaataggtca 318  Q
    |||||||| ||||  ||||||||| |||||| |||||||||||    
T  41555527 aaggtcaattattgcgggacaaattttttttccaaataggtca 41555485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 41 - 157
Target Start/End: Complemental strand, 10441631 - 10441517
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| ||||||||||||| || |||||||||||||| | ||||||| |||||||||||| ||||||  |||| |||| ||||||||| |||    
T  10441631 tactccctccgtccctgaataagtgacctacttgaccatttcacacagattaagataagtgtaaagataaaagaa--agagtgatatttttactgaattg 10441534  T
Q  141 cccttgtcattattttg 157  Q
    ||||| | |||||||||    
T  10441533 cccttattattattttg 10441517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 10441251 - 10441149
Alignment:
Q  234 ttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaa-tattttttacaaataggtcacttattcagggatg 332  Q
    ||||||| ||||||  |||||||||||| ||  |||| ||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||| |    
T  10441251 ttataagaggtaaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaaatttttttttacaaataggtcacttattcagggacg 10441152  T
Q  333 gag 335  Q
    |||    
T  10441151 gag 10441149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 42 - 210
Target Start/End: Original strand, 28689666 - 28689829
Alignment:
Q  42 actccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgc 141  Q
    |||||||| ||| ||||||||||||  |||||||| |||||||| | |||||||||| ||||||||||||  ||| | |  |||| ||||||||| ||||    
T  28689666 actccctctgtccctgaataagtgatctatttgactatttcacacagattaagaaaaatgtaaagatgaagaaaaaaaa--gatatttttactgaattgc 28689763  T
Q  142 ccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 210  Q
    |||| | |||||||| ||||   |||| |||||| |||| ||||||||  |||||||||||||||||||    
T  28689764 ccttattattatttttaaac--cttca-ttttaaataataattactttaattgttccactacaaacttt 28689829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 335
Target Start/End: Original strand, 28690088 - 28690188
Alignment:
Q  234 ttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatgg 333  Q
    ||||||||| ||||  |||||||||||| ||  |||| |||||||||||| |||| || ||| ||| ||||||||||||| |||| ||||||||||| ||    
T  28690088 ttataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaaatattttgcgac-aattttttttacaaatatgtcagttattcagggacgg 28690186  T
Q  334 ag 335  Q
    ||    
T  28690187 ag 28690188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 35029194 - 35029154
Alignment:
Q  72 ttgaccatttcacataaattaagaaaagtgtaaagatgaaa 112  Q
    |||||||||||||||| ||||||||||||||| | ||||||    
T  35029194 ttgaccatttcacatagattaagaaaagtgtataaatgaaa 35029154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 38 - 335
Target Start/End: Complemental strand, 29194291 - 29193994
Alignment:
Q  38 tactactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgag 137  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29194291 tactactccctccgtccctgaataagtgacctatttgaccatttcacacaaattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgag 29194192  T
Q  138 ttgcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttat 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  29194191 ttgcccttgtcattattttgaaactttttcacttttaagtaatgattattttctttgttccactacaaactttaacatcgggaccacaaaaagtatttat 29194092  T
Q  238 aaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||| ||||    
T  29194091 aaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacacattttttttacaaataggtcacttattcagggacggag 29193994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 41 - 335
Target Start/End: Complemental strand, 2110520 - 2110226
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    |||||| |||||| ||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2110520 tactccttccgtccctgaataagtgacatatttgatcatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 2110421  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2110420 cccttgtcattattttgaaactttttcacttttaagtaatgattactttttttgttccactacaaactttaacatggggaccacaaaaagtatttataag 2110321  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  2110320 gggtaaatctgtcaaattttgcttagaaatctgataaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcagggacggag 2110226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 41 - 335
Target Start/End: Complemental strand, 43370974 - 43370680
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || |||||||||| ||||||||||||||||| | ||||||||||||||||| || |||||||||||| ||||||||||||||||||    
T  43370974 tactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaaaataaaagaaagagagtgatacttttactgagttg 43370875  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  43370874 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 43370775  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  43370774 gggtaaatctgtcaaattttgcttagaaatctaagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcagggacggag 43370680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 41 - 335
Target Start/End: Original strand, 45080420 - 45080712
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||| |  |||||||||||||||||    
T  45080420 tactccctccgtccctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagtg--atacttttactgagttg 45080517  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45080518 cccttatcattatgttgaaactttttcacttttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 45080617  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  45080618 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcagggacggag 45080712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 41 - 335
Target Start/End: Original strand, 28585683 - 28585977
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    |||||| |||||| || |||||||||| ||||||||||||||||| | |||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  28585683 tactccatccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttactgagttg 28585782  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  28585783 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataaa 28585882  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||    
T  28585883 gggtaaatctgtcaaattttgcttagaaatctgagaaggttaagtattgtgggataaatattttttacaaataggtcacttattcagggacggag 28585977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 58 - 335
Target Start/End: Original strand, 4828106 - 4828383
Alignment:
Q  58 aataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttg 157  Q
    |||||||||| ||||||||||||||||| | |||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||    
T  4828106 aataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaaaagagtgatacttttactgagttgcccttgtcattattttg 4828205  T
Q  158 aaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaat 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  4828206 aaactttttcacttttaagtaatgattactttctttgttccactataaactttaacatggggaccacaaaaagtatttataaggggtaaatttgtcaaat 4828305  T
Q  258 tttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    |||| |||||||| |||||||||||| |||| |||||||||||||||||||||||| |||||||||| ||||| ||||    
T  4828306 tttgcttagaaatttgagaaggtcaaatattgtgggacaaatattttttacaaatatgtcacttattgagggacggag 4828383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 41 - 316
Target Start/End: Original strand, 8381316 - 8381591
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| ||||||||||||  ||||||||||||||||| | |||||||||| ||||||||||||||||| |||| ||||||||||||||||||    
T  8381316 tactccctccgtccctgaataagtgatctatttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaatagagtgatacttttactgagttg 8381415  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||  || |||||||||||||||||||    
T  8381416 cccttgtcattattttgaaactttttcatttttaagtaatgattactttctttgttccactacaaattttaacatgaagaccacaaaaagtatttataag 8381515  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggt 316  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||  |||||||||||||||||||||||||||    
T  8381516 gggtaaatctgtcaaattttatttagaaatttgagaaggtcaagtatcgtgggacaaatattttttacaaataggt 8381591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 42 - 304
Target Start/End: Original strand, 1779073 - 1779335
Alignment:
Q  42 actccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgc 141  Q
    ||||| |||||| || ||||  |||| || |||||||||||||||| |||||||||||||||||||||||||||||| |  |||| ||||||||| |||     
T  1779073 actccttccgtccctcaatacttgacttacttgaccatttcacatagattaagaaaagtgtaaagatgaaagaaagataatgatatttttactgaattgt 1779172  T
Q  142 ccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataagg 241  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |    
T  1779173 ctttgtcattattttgaaactttttcacttttaagtaatgattactttctttattccactacaaactttaacatggggaccacaaaaagtatttataaag 1779272  T
Q  242 ggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatatttt 304  Q
    ||||||||||| ||||| || |||||||||||||||| ||| | ||| |||||||||||||||    
T  1779273 ggtaaatctgttaaattctgcttagaaatctgagaagatcaggcattgtgggacaaatatttt 1779335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 72 - 318
Target Start/End: Original strand, 42846942 - 42847184
Alignment:
Q  72 ttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttcactt 171  Q
    |||||||||||||| | |||| |||| ||| ||| ||||||||  ||||  |||| ||||||| | ||| |||||| ||||||||||||  | |||||||    
T  42846942 ttgaccatttcacacagattatgaaaggtgcaaaaatgaaaga--gagaatgatatttttactaaattgtccttgttattattttgaaa--tcttcactt 42847037  T
Q  172 ttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatc 271  Q
    |||||||||||||| ||||||||||||| |||||||||| |||||| || ||||||||||||||||||||||||||| ||||||||| || ||| |||||    
T  42847038 ttaagtaatgattattttctttgttccattacaaacttttacatggagaacacaaaaagtatttataaggggtaaatttgtcaaattctgcttaaaaatc 42847137  T
Q  272 tgagaaggtcaagtattatgggacaaatattttttacaaataggtca 318  Q
    ||| ||||||||||||||||||||||||||||||| |||||||||||    
T  42847138 tgaaaaggtcaagtattatgggacaaatatttttttcaaataggtca 42847184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 72 - 229
Target Start/End: Complemental strand, 9370643 - 9370486
Alignment:
Q  72 ttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttcactt 171  Q
    |||||||||||||| | |||||||||||||||||||||||| ||||| |  |||  ||||||||| ||| ||||||||||||||||||||||||||||||    
T  9370643 ttgaccatttcacacagattaagaaaagtgtaaagatgaaaaaaagaaaatgatttttttactgaattgtccttgtcattattttgaaactttttcactt 9370544  T
Q  172 ttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaa 229  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  9370543 ttaagtaatgattactttctttgtttcactacaaactttaatatggggatcacaaaaa 9370486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 75 - 258
Target Start/End: Original strand, 43377242 - 43377423
Alignment:
Q  75 accatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttcactttta 174  Q
    ||||||||| | |||||||||||||||||||||||||||||||| |  |||||||||||||| |||  ||||| ||||||||||||| ||  ||||||||    
T  43377242 accatttcaaacaaattaagaaaagtgtaaagatgaaagaaagaaaatgatacttttactgaattgtacttgttattattttgaaacctt--cactttta 43377339  T
Q  175 agtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaatt 258  Q
    |||||||||||||||||||||||||||||||||||| || ||| ||  |||||||||||||||||| | ||||| |||||||||    
T  43377340 agtaatgattactttctttgttccactacaaacttttacttggagactacaaaaagtatttataagagataaatttgtcaaatt 43377423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 149 - 306
Target Start/End: Original strand, 39646437 - 39646591
Alignment:
Q  149 attattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaat 248  Q
    ||||||||||||| ||  ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||    
T  39646437 attattttgaaacctt--cacttttaagtaatgattacttt-tttgttccactacaaacttttacatgaggaccacaaaaagtatttataaggggtaaat 39646533  T
Q  249 ctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatatttttt 306  Q
     ||||||||| | |||||||||||||||| ||||| |||| |||||||||||||||||    
T  39646534 ttgtcaaattctatttagaaatctgagaatgtcaaatattgtgggacaaatatttttt 39646591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 37 - 210
Target Start/End: Original strand, 31921617 - 31921788
Alignment:
Q  37 ttactactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactga 136  Q
    ||||||||||||||||| ||||||||||||  ||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||| ||||||| |    
T  31921617 ttactactccctccgtccctgaataagtgatctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatatttttactaa 31921716  T
Q  137 gttgcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 210  Q
     |||||||| | |||||||| ||||   ||||||||||| |||| ||||||||  |||||||||||||| ||||    
T  31921717 attgcccttattattatttttaaac--cttcacttttaaataataattactttaattgttccactacaagcttt 31921788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 41 - 145
Target Start/End: Complemental strand, 30422692 - 30422588
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||| | |||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  30422692 tactccctccgtcgctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaacgatgaaagaaagagagtgatacttttactgagttg 30422593  T
Q  141 ccctt 145  Q
    |||||    
T  30422592 ccctt 30422588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 76 - 202
Target Start/End: Complemental strand, 16970419 - 16970295
Alignment:
Q  76 ccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttcacttttaa 175  Q
    |||||||||| | |||||||||||||||||||| ||||||||| |  |||| ||||||||| |||||||| | |||||||| ||||   |||||||||||    
T  16970419 ccatttcacacatattaagaaaagtgtaaagataaaagaaagataatgatatttttactgaattgcccttattattatttttaaac--cttcacttttaa 16970322  T
Q  176 gtaatgattactttctttgttccacta 202  Q
    ||||||||||||||||||||| |||||    
T  16970321 gtaatgattactttctttgtttcacta 16970295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 25898885 - 25898766
Alignment:
Q  36 attactactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactg 135  Q
    |||| ||||||||||||  ||||||||||||| || |||||||||||||| | |||||||| ||||||||||||||||||| | || |||| ||||||||    
T  25898885 attattactccctccgttcctgaataagtgac-tacttgaccatttcacacagattaagaagagtgtaaagatgaaagaaaaaaagtgatatttttactg 25898787  T
Q  136 agttgcccttgtcattatttt 156  Q
    | |||||||| | ||||||||    
T  25898786 aattgcccttattattatttt 25898766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 234 - 337
Target Start/End: Original strand, 31922032 - 31922135
Alignment:
Q  234 ttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatgg 333  Q
    ||||||||||||||  |||||||||||| ||  |||| ||||||||||||||||| |||||||| | ||||||||||||| |||||||||| ||||| ||    
T  31922032 ttataaggggtaaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaatttttttttacaaatatgtcacttatttagggacgg 31922131  T
Q  334 agag 337  Q
    ||||    
T  31922132 agag 31922135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 212 - 305
Target Start/End: Complemental strand, 16964945 - 16964852
Alignment:
Q  212 acatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttt 305  Q
    |||||| || ||||||||||||||||||||||||||  |||||||||||  ||| |||| ||||||||||||||||| |||||| ||| |||||    
T  16964945 acatggagaccacaaaaagtatttataaggggtaaacttgtcaaattttacttaaaaatttgagaaggtcaagtattgtgggacgaattttttt 16964852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 64 - 161
Target Start/End: Original strand, 39646327 - 39646426
Alignment:
Q  64 tgacatatttgaccatttcacataaattaagaaaag--tgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaac 161  Q
    |||||||||||||||||||| | | ||||||||||   |||||| ||||||||||||||  |||| ||||||||| |||||||||| |||||||||||||    
T  39646327 tgacatatttgaccatttcatacagattaagaaaaaaatgtaaaaatgaaagaaagagaatgatatttttactgaattgcccttgttattattttgaaac 39646426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 25898570 - 25898469
Alignment:
Q  234 ttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatgg 333  Q
    |||||||| |||||  | |||||||||| ||  |||| |||||||||| |||||| ||||| || | |||||||||||||||||||||||||||||| ||    
T  25898570 ttataaggagtaaaattatcaaattttgctttaaaatttgagaaggtcgagtattttgggataatttttttttacaaataggtcacttattcagggacgg 25898471  T
Q  334 ag 335  Q
    ||    
T  25898470 ag 25898469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 120
Target Start/End: Original strand, 27922606 - 27922657
Alignment:
Q  69 tatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagaga 120  Q
    ||||||| ||||||||| | ||||||||||||||||||||||||||||||||    
T  27922606 tatttgatcatttcacacatattaagaaaagtgtaaagatgaaagaaagaga 27922657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 43370667 - 43370707
Alignment:
Q  34 ttattactactccctccgtctctgaataagtgacatatttg 74  Q
    |||||| ||||||||||||| ||||||||||||| ||||||    
T  43370667 ttattattactccctccgtccctgaataagtgacctatttg 43370707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 41 - 335
Target Start/End: Original strand, 10593 - 10887
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10593 tactccctccgtccctgaataagtgacctatttgaccattccacataaattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 10692  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  10693 cccttgtcattattttgaaactttttcacttttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttataaa 10792  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||| | |||||||||||||||||||||||||||||| ||||    
T  10793 gggtaaatctgtcaaattttgcttagaaatctgataaggtcaagtattgtgggacaatttttttttacaaataggtcacttattcagggacggag 10887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 41 - 335
Target Start/End: Complemental strand, 11254800 - 11254506
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11254800 tactccctccgtccctgaataagtgacctatttgaccattccacataaattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 11254701  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  11254700 cccttgtcattattttgaaactttttcacttttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttataaa 11254601  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||| | |||||||||||||||||||||||||||||| ||||    
T  11254600 gggtaaatctgtcaaattttgcttagaaatctgataaggtcaagtattgtgggacaatttttttttacaaataggtcacttattcagggacggag 11254506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 41 - 335
Target Start/End: Complemental strand, 17493826 - 17493532
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| ||||||||||||| ||||||| ||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  17493826 tactccctccgtccctgaataagtgacctatttgatcatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactaagttg 17493727  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17493726 cccttgtcattattttgaaactttttcatttttaagtaatgattactttatttgttccactacaaactttaacatggggaccacaaaaagtatttataag 17493627  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  17493626 gggtaaatctgtcaaattttgtttagaaatctgagaagatcaagtattgtgggacaaatattttttacaaataggtcacttattcagggacggag 17493532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 41 - 330
Target Start/End: Complemental strand, 27821073 - 27820784
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    |||||||| ||||  | |||||||||| ||||||||||||||||| | |||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  27821073 tactcccttcgtcctttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttactgagttg 27820974  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  27820973 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaattttaacatggggaccacaaaaagtatttataag 27820874  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcaggga 330  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27820873 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcaggga 27820784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 41 - 335
Target Start/End: Complemental strand, 18575328 - 18575034
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| ||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18575328 tactccctccgtccctgaataagtgacctatttgatcatttcacacaaattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 18575229  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  18575228 cccttgtcattattttgaaactttttcacttttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 18575129  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
     | ||||| |||||||||||| ||||||||||||||||||| |||||| |||||||| | |||||||||||||||||||||||||||||| ||||    
T  18575128 agataaatttgtcaaattttgcttagaaatctgagaaggtcgagtattgtgggacaatttttttttacaaataggtcacttattcagggacggag 18575034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 44 - 330
Target Start/End: Original strand, 38069898 - 38070184
Alignment:
Q  44 tccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgccc 143  Q
    ||||||||||  |||| ||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  38069898 tccctccgtccttgaacaagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagatagtgatacttttactgagttgccc 38069997  T
Q  144 ttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataagggg 243  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  38069998 ttgtcattattttgaaactttttcatttttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttataatggg 38070097  T
Q  244 taaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcaggga 330  Q
    ||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38070098 taaatctgtcaaattttgcctagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcaggga 38070184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 41 - 335
Target Start/End: Complemental strand, 39907208 - 39906917
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || |||||||||| ||||||||||||| ||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39907208 tactccctccgtcccttaataagtgacttatttgaccattttacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 39907109  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||    
T  39907108 cccttatcattattttgaaattttttcacttttaagtaatgattactttctttgttccactacaaactttaacat--ggaccacaaaaagtatttataag 39907011  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||| |||||| ||||||||||||||| ||||    
T  39907010 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaata-tttttataaatagatcacttattcagggacggag 39906917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 41 - 314
Target Start/End: Original strand, 12738366 - 12738639
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||| ||||||| || ||||  |||| ||||||||||||||||| | |||||||||||||||||||| ||||||||| |  |||| ||||||||| |||    
T  12738366 tactctctccgtccctcaatacttgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagataatgatatttttactgaattg 12738465  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12738466 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaaatatttataag 12738565  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaatag 314  Q
    |||||||| ||||||||| || |||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  12738566 gggtaaatttgtcaaattctgcttagaaatctgataaggtcaagtattatgggacaaatattttttccaaatag 12738639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 64 - 318
Target Start/End: Original strand, 17335994 - 17336247
Alignment:
Q  64 tgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactt 163  Q
    |||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||  |||| |||||||||  || ||||||||||||||||||||||    
T  17335994 tgacctatttgacaatttcacataaattaagaaaa-tgtaaagatgaaagaaagagaatgatatttttactgaactgtccttgtcattattttgaaactt 17336092  T
Q  164 tttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtt 263  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||| || |    
T  17336093 tttcacttttaagtaatgattactttcgttgttccactagaaactttaacatgggaaccacaaaaagtatttataaggggtaaatctgtcaaattctgct 17336192  T
Q  264 tagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtca 318  Q
    ||||||||| |||||||||||||||||||||||||||||||||  ||||||||||    
T  17336193 tagaaatctaagaaggtcaagtattatgggacaaatattttttcaaaataggtca 17336247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 41 - 335
Target Start/End: Complemental strand, 9754069 - 9753776
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || ||||  |||| || |||||||||||||| | |||||||||||||||||||||||||||||| |  |||| ||||||||| |||    
T  9754069 tactccctccgtccctcaatacttgacctacttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagataatgatatttttactgaattg 9753970  T
Q  141 cccttgtca-ttattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataa 239  Q
     |||||| | |||||||||||| ||  |||||||||||||||||||||||||||||| ||||||||||||| |||| | || |||||||| |||||||||    
T  9753969 tccttgttaattattttgaaacctt--cacttttaagtaatgattactttctttgtttcactacaaacttttacattgagaccacaaaaaatatttataa 9753872  T
Q  240 ggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    | ||||||| ||||||||| || |||||||| |||||||||||||||||||||||||||||||||||  ||||||||||  |||| ||||| ||||    
T  9753871 gaggtaaatttgtcaaattctgcttagaaatttgagaaggtcaagtattatgggacaaatattttttttaaataggtcaagtattgagggacggag 9753776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 36 - 313
Target Start/End: Original strand, 13243543 - 13243818
Alignment:
Q  36 attactactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactg 135  Q
    |||||||||||||||||| || ||||  | |  |||||||||||||||||   |||||||||||||||||||| ||||||||| |  |||| ||||||||    
T  13243543 attactactccctccgtc-ctcaatacttaatttatttgaccatttcacaccgattaagaaaagtgtaaagataaaagaaagataatgatatttttactg 13243641  T
Q  136 agttgcccttgtca-ttattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatt 234  Q
    | ||| |||||| | |||||||||||| ||  || |||||||||||||||| |||||||||||||||||||||||| |||| | || |||||||||||||    
T  13243642 aattgtccttgttaattattttgaaacctt--catttttaagtaatgattattttctttgttccactacaaacttttacattgagaccacaaaaagtatt 13243739  T
Q  235 tataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaata 313  Q
    |||||||||| ||| ||||||||| || |||||||| |||||||||||| |||| || |||| ||||||||| ||||||    
T  13243740 tataaggggtgaatttgtcaaattctgcttagaaatttgagaaggtcaaatattgtgagacatatattttttccaaata 13243818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 41 - 210
Target Start/End: Complemental strand, 11147949 - 11147782
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| ||||||||||||| || |||| ||||||||| | ||||||||||||||||||||||||| ||||||  |||| ||||||||| |||    
T  11147949 tactccctccgtccctgaataagtgacctacttgatcatttcacacagattaagaaaagtgtaaagatgaaaggaagagaatgatatttttactgaattg 11147850  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 210  Q
    ||||| | |||||||| ||||   ||||||||||| |||| ||||||||  |||||||||||||||||||    
T  11147849 cccttattattatttttaaac--cttcacttttaaataataattactttaattgttccactacaaacttt 11147782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 234 - 326
Target Start/End: Complemental strand, 11146877 - 11146785
Alignment:
Q  234 ttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattca 326  Q
    |||||||| |||||  |||||||||||||||  |||| ||| ||||||||||||| ||  |||| | |||||||||||||| |||||||||||    
T  11146877 ttataaggagtaaaattgtcaaattttgttttaaaatttgataaggtcaagtattttgaaacaatttttttttacaaatagatcacttattca 11146785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 5878176 - 5878222
Alignment:
Q  75 accatttcacataaattaagaaaagtgtaaagatgaaagaaagagag 121  Q
    ||||||||||||| ||||||||||||||| | |||||||| ||||||    
T  5878176 accatttcacatagattaagaaaagtgtataaatgaaagagagagag 5878222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 29638457 - 29638412
Alignment:
Q  75 accatttcacataaattaagaaaagtgtaaagatgaaagaaagaga 120  Q
    ||||||||||| | ||||||||||||||| | ||||||||||||||    
T  29638457 accatttcacacagattaagaaaagtgtataaatgaaagaaagaga 29638412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 41 - 327
Target Start/End: Complemental strand, 4041247 - 4040961
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  4041247 tactccctccgtcccttaataagtgacatatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagggagtgatacttttactgagttg 4041148  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  4041147 tccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaacaagtatttataag 4041048  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcag 327  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4041047 gggtaaatccgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcag 4040961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 41 - 335
Target Start/End: Original strand, 40232115 - 40232409
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || |||||||||  ||||||||||||||||| | |||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  40232115 tactccctccgtcccttaataagtgatctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttactgagttg 40232214  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  40232215 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 40232314  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||    
T  40232315 gggtaaatctgtcaaattttgcttagaaatttgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcaaggacggag 40232409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 58 - 335
Target Start/End: Complemental strand, 29737688 - 29737411
Alignment:
Q  58 aataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttg 157  Q
    |||||||||| ||||||||||||||||| | ||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||    
T  29737688 aataagtgacttatttgaccatttcacacagattaagaaaagtgtaaaaataaaagaaagagagtgatacttttactgagttgcccttgtcattattttg 29737589  T
Q  158 aaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaat 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29737588 aaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaat 29737489  T
Q  258 tttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    |||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  29737488 tttgcttagaaatctaagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcagggacggag 29737411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 41 - 324
Target Start/End: Complemental strand, 6392571 - 6392288
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    |||||||||||||  |||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  6392571 tactccctccgtccttgaataagtgacatattttaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactaagttg 6392472  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6392471 cccttgtcattattttgaaactttttcacttttaagtaatgattaatttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 6392372  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttatt 324  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||    
T  6392371 gggtaaatctgtcaaattttgcttagaaatctgagaaggtaaagtattgtgggacaaatattttttacaaatagatcacttatt 6392288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 41 - 335
Target Start/End: Original strand, 27596086 - 27596379
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || |||||||||| ||||||||||||| ||| | ||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  27596086 tactccctccgtccctaaataagtgacttatttgaccattttacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgggttg 27596185  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||| ||||||||||||||||||     
T  27596186 cccttgtcattattttgaaactttttcacttttaagtaatgattattttctttgtttcactacaaactttaacat-gggaccacaaaaagtatttataaa 27596284  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  27596285 gggtaaatctgtcaaattttgcctagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcagggacggag 27596379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 41 - 335
Target Start/End: Original strand, 25943649 - 25943939
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| ||||||||||||| ||||||| ||||||||| |  ||||||||| |||||||||||||||||||||| |||||||||||||| |||    
T  25943649 tactccctccgtccctgaataagtgacctatttgatcatttcacaga--ttaagaaaattgtaaagatgaaagaaagagagtgatacttttactgaattg 25943746  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   || ||||||||||||||    
T  25943747 ccattgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggga--ccataaagtatttataag 25943844  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  25943845 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcagggacggag 25943939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 49 - 330
Target Start/End: Original strand, 31689361 - 31689642
Alignment:
Q  49 ccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtc 148  Q
    ||||| || |||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31689361 ccgtccctaaataagtgacatatttcaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttgtc 31689460  T
Q  149 attattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaat 248  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||| ||||| ||||||||||||| ||| |||||||||||| ||||||||||||||    
T  31689461 attattttgaaactttttcacttttaaaaaatgattactttctttgtttcactataaactttaacatgaggaccacaaaaagtatatataaggggtaaat 31689560  T
Q  249 ctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcaggga 330  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  31689561 ctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacagatattttttacaaataggtcacttattcaggga 31689642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 41 - 350
Target Start/End: Original strand, 41427648 - 41427955
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    |||||||||||||||| ||||| ||   ||||||| ||||||||| | ||||| |||||||||||||||||||||||||||  ||||||||| ||| |||    
T  41427648 tactccctccgtctctaaataaatggtctatttgatcatttcacacagattaaaaaaagtgtaaagatgaaagaaagagagtaatacttttattgaattg 41427747  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  41427748 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgtttcactacaaactttaacatggggaccacaaaaagtatttataag 41427847  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggagaggga 340  Q
    ||||||||||||||||||||| |||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||| | ||| |  ||||||    
T  41427848 gggtaaatctgtcaaattttgcttagaaatctgagaagatcaaatattgtgggacaaatattttttacaaataggtcacttatttaaggacg--gaggga 41427945  T
Q  341 gtattattat 350  Q
    ||||||||||    
T  41427946 gtattattat 41427955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 58 - 326
Target Start/End: Original strand, 24300171 - 24300429
Alignment:
Q  58 aataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttg 157  Q
    |||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||              
T  24300171 aataagtgacatatttgaccatttcacacagattaagaaaagtgtgaagatgaaagaaagagagtgatacttttactgagttgcccttgt---------- 24300260  T
Q  158 aaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaat 257  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24300261 aaactttttcacttttaagtaatgattactttctttgtttcactacaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaat 24300360  T
Q  258 tttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattca 326  Q
    |||| |||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24300361 tttgcttagaaatttgataaggtcaagtattgtgggacaaatattttttacaaataggtcacttattca 24300429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 89 - 335
Target Start/End: Original strand, 38276593 - 38276839
Alignment:
Q  89 attaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttcacttttaagtaatgattactt 188  Q
    ||||||||||| ||||||||||||||||||||  |||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38276593 attaagaaaagagtaaagatgaaagaaagagaatgatgtttttactgaattgcccttgtcattattttgaaactttttcacttttaagtaatgattactt 38276692  T
Q  189 tctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    |||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||| || |||||||| ||| |||||||||||||    
T  38276693 tctttgttccactacaaactttaatatgaggaccacaaaaagtatttataaggggtaaatctgtcaaattctgcttagaaatatgaaaaggtcaagtatt 38276792  T
Q  289 atgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
     ||||||||||||||||| |||||||||||  |||| ||||| ||||    
T  38276793 gtgggacaaatatttttttcaaataggtcaagtattgagggacggag 38276839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 75 - 335
Target Start/End: Original strand, 21442834 - 21443092
Alignment:
Q  75 accatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttcactttta 174  Q
    ||||||||| | | |||||||||||||||||||||||| ||| |||  |||| ||||||| | |||||||||| ||||||||||||||||  ||||||||    
T  21442834 accatttcatacagattaagaaaagtgtaaagatgaaaaaaatagaatgatatttttactaaattgcccttgttattattttgaaacttt--cactttta 21442931  T
Q  175 agtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatctga 274  Q
    ||||||| ||||||||||| ||||||| |||||||| |||||| || ||||||||||||||||||||| ||||| ||||||||| |  ||| ||||||||    
T  21442932 agtaatggttactttctttattccactgcaaacttttacatggagaccacaaaaagtatttataagggataaatttgtcaaattctacttaaaaatctga 21443031  T
Q  275 gaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    |||||||||||||| ||||||||||||||||| |||||||||||  |||| ||||| ||||    
T  21443032 gaaggtcaagtattgtgggacaaatatttttttcaaataggtcaagtattgagggacggag 21443092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 103 - 318
Target Start/End: Complemental strand, 48838296 - 48838082
Alignment:
Q  103 aaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccacta 202  Q
    |||||| ||||||||| |  |||| ||||||| | ||| |||||| |||||||| |||||||  ||||||||||||||||||||||||||||||||||||    
T  48838296 aaagataaaagaaagaaaatgatatttttactaaattgtccttgttattattttaaaacttt--cacttttaagtaatgattactttctttgttccacta 48838199  T
Q  203 caaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatatt 302  Q
    || ||||| |||||| || ||||||||||||||||||||||||||| ||||||||| || ||| ||||||||||| |||||||||| |||||||||||||    
T  48838198 cacacttttacatggagaccacaaaaagtatttataaggggtaaatttgtcaaattctgcttaaaaatctgagaaagtcaagtattgtgggacaaatatt 48838099  T
Q  303 -ttttacaaataggtca 318  Q
     |||| |||||||||||    
T  48838098 ttttttcaaataggtca 48838082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 41 - 210
Target Start/End: Complemental strand, 22338268 - 22338101
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || |||||||||| || || ||||||||||| | ||||||||||||||||||||||||||||||||| |||| ||||||||| |||    
T  22338268 tactccctccgtccctaaataagtgacctacttaaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatatttttactgaattg 22338169  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 210  Q
    ||||| | |||||||| ||||   ||||||||||| |||| ||||||||   | ||||||||||||||||    
T  22338168 cccttattattatttttaaac--cttcacttttaaataataattactttaaatattccactacaaacttt 22338101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 50 - 210
Target Start/End: Complemental strand, 22620041 - 22619883
Alignment:
Q  50 cgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtca 149  Q
    |||| ||||||||||||| || |||| ||||||||| | ||||||||||||||||||||||||||||||||| |||| ||||| ||| ||||| || | |    
T  22620041 cgtccctgaataagtgacctacttgatcatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatatttttattgaattgcctttatta 22619942  T
Q  150 ttattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 210  Q
    ||||||| ||||   ||||||||||| |||| ||||||||  |||||||||||||||||||    
T  22619941 ttatttttaaac--cttcacttttaaataataattactttaattgttccactacaaacttt 22619883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 22337818 - 22337716
Alignment:
Q  234 ttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaa-atattttttacaaataggtcacttattcagggatg 332  Q
    ||||||||||||||  |||||| ||||| ||  |||| ||||||||||||||||| ||||||||  | |||||||||||||||||||||||||||||| |    
T  22337818 ttataaggggtaaaattgtcaatttttgctttaaaatttgagaaggtcaagtattttgggacaattttttttttacaaataggtcacttattcagggacg 22337719  T
Q  333 gag 335  Q
    |||    
T  22337718 gag 22337716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 328
Target Start/End: Complemental strand, 22619615 - 22619537
Alignment:
Q  250 tgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagg 328  Q
    |||||||||||| ||  |||| ||||||| ||||||||| ||  |||| | | ||||||||||||||||||||||||||    
T  22619615 tgtcaaattttgctttaaaatttgagaagatcaagtattttgaaacaattttattttacaaataggtcacttattcagg 22619537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 7380533 - 7380596
Alignment:
Q  39 actactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgt 102  Q
    |||||| ||||||||| |||||||||||  || |||||||||||||| | ||||| ||||||||    
T  7380533 actacttcctccgtctttgaataagtgatctacttgaccatttcacacagattaaaaaaagtgt 7380596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 4040947 - 4040980
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttg 74  Q
    ||||||||||||||||||||||||||| ||||||    
T  4040947 tactccctccgtctctgaataagtgacctatttg 4040980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 42834558 - 42834518
Alignment:
Q  36 attactactccctccgtctctgaataagtgacatatttgac 76  Q
    ||||||||||||||||||||| ||||| |||| ||||||||    
T  42834558 attactactccctccgtctctaaataaatgacctatttgac 42834518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 41 - 335
Target Start/End: Complemental strand, 36982486 - 36982192
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  36982486 tactccctccgtccctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaaaagagtgatacttttactgagttg 36982387  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36982386 cccttgtcattattttgaaactttttcacttttaagtaatgattattttatttgttccactacaaactttaacatggggaccacaaaaagtatttataag 36982287  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    |||||||||||||||||||||  ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  36982286 gggtaaatctgtcaaattttgcctagaaatatgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcagggacggag 36982192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 41 - 308
Target Start/End: Original strand, 42897374 - 42897641
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42897374 tactccctccgtccctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 42897473  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42897474 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 42897573  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttac 308  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  42897574 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttac 42897641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 41 - 335
Target Start/End: Complemental strand, 14044355 - 14044062
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| ||||||||||||| ||||||| |||||||||   ||||||||||||||||||||||||||||||||| |||||||| ||| |||||    
T  14044355 tactccctccgtccctgaataagtgacctatttgatcatttcacacgtattaagaaaagtgtaaagatgaaagaaagagagtgatacttt-actaagttg 14044257  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14044256 cccttgtcattattttgaaactttttcacttttaaataatgattactttatttgttccactacaaactttaacatggggaccacaaaaagtatttataag 14044157  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
     |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14044156 aggtaaatctgtcaaattttgcttagaaatctgagaaggtcaaatattatgggacaaatattttttacaaataggtcacttattcagggacggag 14044062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 41 - 335
Target Start/End: Original strand, 2970666 - 2970958
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||| ||| || ||||  |||| || |||||||||||||| | |||||||||| ||||||||||||||||||| |  |||| ||| ||||| |||    
T  2970666 tactccctctgtccctcaatatttgacctacttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagataatgatattttcactgaattg 2970765  T
Q  141 cccttgtca-ttattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataa 239  Q
    ||||||| | |||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||| ||| | || |||||||||||||||||     
T  2970766 cccttgttaattattttgaaacctt--cacttttaagtaatgattactttctttgttccactacaaacttta-cattgagaccacaaaaagtatttatac 2970862  T
Q  240 ggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    ||||||||| ||||||||| || |||||||| |||||| |||||||||| ||||||||||||||||| |||||||||||  |||| ||||| ||||    
T  2970863 ggggtaaatttgtcaaattctgcttagaaatttgagaatgtcaagtattgtgggacaaatatttttttcaaataggtcaagtattgagggacggag 2970958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 41 - 206
Target Start/End: Original strand, 36767876 - 36768039
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    |||||| ||| || ||||||||||||| |||||||||| |||||| | ||||| || |||||||||||||||||||||||| |||| ||||||||| |||    
T  36767876 tactccgtccctccctgaataagtgacctatttgaccacttcacacagattaaaaagagtgtaaagatgaaagaaagagagtgatatttttactgaattg 36767975  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaa 206  Q
    ||||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||    
T  36767976 cccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaa 36768039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 55 - 207
Target Start/End: Complemental strand, 33404515 - 33404365
Alignment:
Q  55 ctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattatt 154  Q
    ||||||||||||| || |||| ||||| ||| | |||||||||| |||||||||||||||||||||| |||| ||||||||| |||||||| | ||||||    
T  33404515 ctgaataagtgacctacttgatcattttacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgcccttattattatt 33404416  T
Q  155 ttgaaactttttcacttttaagtaatgattactttctttgttccactacaaac 207  Q
    || |||| |||  |||||||| |||| ||||||||  ||||||||||||||||    
T  33404415 tttaaaccttt--acttttaaataataattactttaattgttccactacaaac 33404365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 41 - 157
Target Start/End: Complemental strand, 5712716 - 5712600
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| |||||||| |||| || ||||||||| |||| | |||||||||| ||||||||||||||||||| || |||| |||| |||| |||    
T  5712716 tactccctccgtccctgaataaatgacctacttgaccattccacacagattaagaaaaatgtaaagatgaaagaaagaaagtgatattttttctgaattg 5712617  T
Q  141 cccttgtcattattttg 157  Q
    ||||| | |||||||||    
T  5712616 cccttattattattttg 5712600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 33403301 - 33403200
Alignment:
Q  234 ttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatgg 333  Q
    ||||||||||||||  |||||||||||| ||  |||| ||||||||||||||||| | |||||| | |||||||||||||| ||||||||||||||| ||    
T  33403301 ttataaggggtaaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttaggacaatttttttttacaaatagatcacttattcagggacgg 33403202  T
Q  334 ag 335  Q
    ||    
T  33403201 ag 33403200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 234 - 335
Target Start/End: Original strand, 36768782 - 36768883
Alignment:
Q  234 ttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatgg 333  Q
    ||||||||||||||  |||||||||||| ||  |||| ||| |||||| |||||| |||||||| | ||||  | |||||||||||||||||||||| ||    
T  36768782 ttataaggggtaaaattgtcaaattttgctttaaaatttgataaggtcgagtattttgggacaatttttttaaaaaaataggtcacttattcagggacgg 36768881  T
Q  334 ag 335  Q
    ||    
T  36768882 ag 36768883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 41 - 335
Target Start/End: Complemental strand, 46862856 - 46862562
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || |||||||||| ||||||||||||||||| | |||||||||||||||||||| |||||||||||| ||||||||| ||||||||    
T  46862856 tactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttcctgagttg 46862757  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  46862756 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 46862657  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    ||||||||||||||||||||| ||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  46862656 gggtaaatctgtcaaattttgcttaaaaatctaagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcagggacggag 46862562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 39 - 324
Target Start/End: Complemental strand, 50777299 - 50777014
Alignment:
Q  39 actactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagt 138  Q
    ||||||||||||||| || |||||||||| ||||||||||||||||| | |||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  50777299 actactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttactgagt 50777200  T
Q  139 tgcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttata 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  50777199 tgcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccccaaaaagtatttata 50777100  T
Q  239 aggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttatt 324  Q
    ||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  50777099 aggggtaaatctgtcaaattttgcttagaaatttaagaaggtcaagtattatgggacaaatattttttacaaataagtcacttatt 50777014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 41 - 350
Target Start/End: Original strand, 1929217 - 1929523
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  1929217 tactccctccgtccctgaataagtgacatatttgatcatttcacacagattaagaaaagtgtaaagatgaaagaaaaagagtgatacttttactgagttg 1929316  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  1929317 cccttgtcattattttgaaactttttcacttttaagtaatgatt-ttttttttgttccactacaaactttaacatggggaccacaaaaaatatttataag 1929415  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggagaggga 340  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |  ||||||    
T  1929416 gggtaaatctgtcaaattttgcttagaaatatgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttatttagggacg--gaggga 1929513  T
Q  341 gtattattat 350  Q
    ||||||||||    
T  1929514 gtattattat 1929523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 44 - 337
Target Start/End: Original strand, 39150900 - 39151193
Alignment:
Q  44 tccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgccc 143  Q
    |||||||||| || |||||||||  ||||||||||||||||| | |||||||||| ||||||||| |||||||||||  |||||||||||||||||||||    
T  39150900 tccctccgtcccttaataagtgatctatttgaccatttcacacagattaagaaaaatgtaaagataaaagaaagagaatgatacttttactgagttgccc 39150999  T
Q  144 ttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataagggg 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  39151000 ttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgaggaccacaaaaagtatttataagggg 39151099  T
Q  244 taaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggagag 337  Q
    |||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39151100 taaatctgtcaaattttgcttagaaatctaagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcagggacggagag 39151193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 41 - 335
Target Start/End: Original strand, 28036700 - 28036995
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatactttt-actgagtt 139  Q
    |||||||| |||| || |||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||| |||| ||||||||    
T  28036700 tactcccttcgtcccttaataagtgacttatttgaccatttcacacaaattaagaaaagtgtaaagataaaagaaagagagtgatattttttactgagtt 28036799  T
Q  140 gcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataa 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28036800 gcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataa 28036899  T
Q  240 ggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    ||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||    
T  28036900 gggataaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcatttattaagggacggag 28036995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 41 - 335
Target Start/End: Complemental strand, 32046133 - 32045839
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    |||||||||| || ||||||||||||  ||||||||||||||||| | ||||||||||||||||| |||||||||||| || ||||||||||| ||||||    
T  32046133 tactccctccatcactgaataagtgatttatttgaccatttcacacagattaagaaaagtgtaaaaatgaaagaaagaaagtgatacttttaccgagttg 32046034  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32046033 cccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 32045934  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||| ||||    
T  32045933 gggtaaatctttcaaattttgcttagaaatctgagaaggtcaagtattgtggaacaaatattttttacaaatagatcacttattcagggacggag 32045839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 76 - 335
Target Start/End: Complemental strand, 38321910 - 38321651
Alignment:
Q  76 ccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttcacttttaa 175  Q
    |||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38321910 ccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttgtcattattttgaaactttttcacttttaa 38321811  T
Q  176 gtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatctgag 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| | |||||||| |||||||||||||    
T  38321810 gtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataagggttaaatcttttaaattttgcttagaaatctgag 38321711  T
Q  276 aaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||    
T  38321710 aaggtcaagtattgtgggacaaatattttttacaaataggtcagttattcagggacggag 38321651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 45 - 335
Target Start/End: Complemental strand, 46371217 - 46370933
Alignment:
Q  45 ccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgccct 144  Q
    ||||||||| || |||||||||  ||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  46371217 ccctccgtcccttaataagtgatctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgaattgccct 46371118  T
Q  145 tgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggt 244  Q
    ||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||    
T  46371117 tgtcattattttgaaactttttca-----aagtaatgattactttctttgttccactacaaactttaatatggg-accacaaaaagtatttataaggggt 46371024  T
Q  245 aaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    |||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  46371023 aaatttgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcagggacggag 46370933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 35 - 335
Target Start/End: Complemental strand, 8229370 - 8229069
Alignment:
Q  35 tattactactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaaga-gagggatacttttac 133  Q
    ||||||| ||||||| ||||||||||||||||  ||||||||||||||||| | |||||||||||||||||||||||| ||| | ||| |||| ||||||    
T  8229370 tattacttctccctcggtctctgaataagtgatttatttgaccatttcacacagattaagaaaagtgtaaagatgaaaaaaaaaagagtgatatttttac 8229271  T
Q  134 tgagttgcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtat 233  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||    
T  8229270 tgagttgcccttgtcattattttaaaactttttcacttttaagtaatgattactttctttatttcactacaaactttaacatggggaccacaaaaagtat 8229171  T
Q  234 ttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatgg 333  Q
    ||||||||||||||| |||||||||||| ||| |||||| ||||||| |||||||  || |||||||||||||| |||||||||||||||||||||| ||    
T  8229170 ttataaggggtaaatttgtcaaattttgcttaaaaatctaagaaggttaagtattgaggaacaaatattttttataaataggtcacttattcagggacgg 8229071  T
Q  334 ag 335  Q
    ||    
T  8229070 ag 8229069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 41 - 318
Target Start/End: Original strand, 1207452 - 1207727
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || ||||  |||| || |||||||||||||| | ||||||||||||||| |||||||||||||| |  |||| ||||||||| |||    
T  1207452 tactccctccgtcccttaatacttgacctacttgaccatttcacacagattaagaaaagtgtagagatgaaagaaagataatgatatttttactgaattg 1207551  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||  | | ||||||||||||||     
T  1207552 cccttgtcattattttgaaactttttcacttttaagtaatgattactttccttgttcctctacaaactttaacataggggac-ccaaaagtatttataa- 1207649  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtca 318  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||  |||||||||||||| |||||||||||    
T  1207650 gggtaaatctgtcaaattctgcttagaaatctgagaaggtcaagtattataagacaaatatttttttcaaataggtca 1207727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 41 - 318
Target Start/End: Original strand, 40562436 - 40562711
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || ||||  |||| || |||||||||||||| | ||||||||||||||||||||||||||||||||  |||| ||||||||| |||    
T  40562436 tactccctccgtccctcaatacttgacctacttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagaatgatatttttactgaattg 40562535  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||||| |||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||| |||||| || |||||| ||||||||||||    
T  40562536 cccttgttattattttgaaactttt--acttttaagtaatgattactttctttgttctactacaaacttttacatggagaccacaaagagtatttataag 40562633  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtca 318  Q
    |||||||| | ||||||| || ||| |||| |||||| |||||||||| ||||||||||||||||| |||||||||||    
T  40562634 gggtaaatttatcaaattctgcttaaaaatatgagaatgtcaagtattgtgggacaaatatttttttcaaataggtca 40562711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 41 - 314
Target Start/End: Original strand, 9129401 - 9129675
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagaggg---atacttttactgag 137  Q
    ||||||||| ||| || |||| |||| ||| ||||| |||||||| | ||||| |||||||||||||| |||||||||||  |   ||| ||||||| |     
T  9129401 tactccctcggtccctcaatacgtgatatacttgactatttcacaaagattaacaaaagtgtaaagataaaagaaagagaatgataatatttttactcaa 9129500  T
Q  138 ttgcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttat 237  Q
    ||| |||||| |||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||| ||| |||||| || |||||||| |||||||    
T  9129501 ttgtccttgttattatttttaaac--tttcacttttaagtaatgattactttctttgttccactacaaaattttacatggagaccacaaaaaatatttat 9129598  T
Q  238 aaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaatag 314  Q
    ||||||||||| | ||||||| || ||| |||||||||||||| || ||||||| || ||||||||||| |||||||    
T  9129599 aaggggtaaatttatcaaattctgcttaaaaatctgagaaggtaaaatattatgagataaatatttttttcaaatag 9129675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 128 - 314
Target Start/End: Complemental strand, 38817984 - 38817801
Alignment:
Q  128 ttttactgagttgcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaa 227  Q
    ||||| ||| ||| |||||| ||||||||||||| ||  || ||||||||||| ||||||||||||||| ||||||||||||| ||||||||| ||||||    
T  38817984 ttttattgaattgtccttgttattattttgaaacctt--ca-ttttaagtaattattactttctttgtttcactacaaacttttacatggggaccacaaa 38817888  T
Q  228 aagtatttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaatag 314  Q
    ||||||||||||||||||||| | |||||||||| |||||||| |||||| ||||| |||||||||||||||||||||| |||||||    
T  38817887 aagtatttataaggggtaaatttatcaaattttgcttagaaatttgagaaagtcaaatattatgggacaaatatttttttcaaatag 38817801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 297
Target Start/End: Original strand, 47603744 - 47603828
Alignment:
Q  212 acatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaa 297  Q
    |||||| |||||| ||||  ||||||||||||||||  ||||||||| || ||| |||| ||||||  | ||||||||||||||||    
T  47603744 acatggagatcaccaaaaacatttataaggggtaaacttgtcaaattctgcttaaaaatttgagaa-attaagtattatgggacaa 47603828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 9590673 - 9590625
Alignment:
Q  72 ttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagaga 120  Q
    |||||||||||||||| |||||||||| |||| | |||||||| |||||    
T  9590673 ttgaccatttcacatagattaagaaaattgtataaatgaaagagagaga 9590625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 41 - 335
Target Start/End: Complemental strand, 70053 - 69759
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || |||||||||| ||||||||||||| | | | ||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  70053 tactccctccgtccctaaataagtgacttatttgaccatttgatacagattaagaaaagtgtaaagatgaaagaaagagagtgataattttactgagttg 69954  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  69953 tccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaatacggggatcacaaaaagtatttataag 69854  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
     |||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||    
T  69853 cggtaaatctgtcaaattttgcttagaaatttgagaaggtcaagtattgtgggacaaatattttttacaaatatgtcacttattcagggacggag 69759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 69753 - 69786
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttg 74  Q
    ||||||||||||| ||||||||||||||||||||    
T  69753 tactccctccgtccctgaataagtgacatatttg 69786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 41 - 327
Target Start/End: Original strand, 28541587 - 28541873
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || |||||||||| ||||||||||||| ||| | ||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  28541587 tactccctccgtccctaaataagtgacctatttgaccattttacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgggttg 28541686  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28541687 cccttgtcattattttgaaactttttcacttttaagtaatgattattttttttgttccactacaaactttaacatggggaccacaaaaagtatttataag 28541786  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcag 327  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||    
T  28541787 gggtaaatctgtcaaattttgcctagaaatctgagaaggtcaagtattgtgggataaatattttttacaaataagtcacttattcag 28541873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 56 - 330
Target Start/End: Complemental strand, 29182876 - 29182602
Alignment:
Q  56 tgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattt 155  Q
    |||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  29182876 tgaataagtgacatatttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgagttgcccttgtcattattt 29182777  T
Q  156 tgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaa 255  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||| ||||||||||| ||||||||||||||    
T  29182776 tgaaactttttcacttttaagtaatgattattttctttgttccactacaaactttaacatagggaccacaaaatgtatttataagaggtaaatctgtcaa 29182677  T
Q  256 attttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcaggga 330  Q
    ||||||  ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  29182676 attttgcctagaaatctgagaaggtcaagtattgtaggacaaatattttttacaaataggtcacttattcaggga 29182602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 41 - 327
Target Start/End: Complemental strand, 12350572 - 12350286
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    |||||||||||||  | |||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  12350572 tactccctccgtccataaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatgcttttactgagttg 12350473  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||| |||||||||||| ||||||    
T  12350472 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttttactacaaactttaacatgaggaccacaaaaagtatatataag 12350373  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcag 327  Q
    ||||||||||||||||||||| |||||||| |||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||    
T  12350372 gggtaaatctgtcaaattttgcttagaaatttgagaaggtcaaatattgtgggacaaatactttttacaaataggtcacttattcag 12350286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 41 - 335
Target Start/End: Complemental strand, 1241408 - 1241115
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| |||||||||| |  ||||| | ||||||||| |||||||||||| |||||| |||||||||||| || ||||||||||||||||||    
T  1241408 tactccctccgtccctgaataagtaatctatttcatcatttcacacaaattaagaaaaatgtaaaaatgaaagaaagaaagtgatacttttactgagttg 1241309  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||    
T  1241308 cccttgtcattattttgaaactttttca-ttttaagtaatgattactttctttgttccactgcaaactttaatatggggaccacaaaaagtatttataag 1241210  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
     |||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||    
T  1241209 aggtaaatctgtcaaattttgcttagaaatctgagaagttcaagtattgtgggacaaatattttttacaaatagatcacttattcagggacggag 1241115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 41 - 335
Target Start/End: Complemental strand, 16436075 - 16435785
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| ||||||||||||| ||||||| ||||||||| | ||||||||||||||||||||||||||||| ||    ||||||||||||||||    
T  16436075 tactccctccgtccctgaataagtgacctatttgagcatttcacacagattaagaaaagtgtaaagatgaaagaaagtga----tacttttactgagttg 16435980  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||| |    
T  16435979 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgagaaccacaaaaagtatttatatg 16435880  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    ||||||||||||||||||||  |||||||| ||||||||||||||||| |||||||||||||||||||||||| |||| ||||| ||||| ||||    
T  16435879 gggtaaatctgtcaaattttccttagaaatttgagaaggtcaagtattgtgggacaaatattttttacaaataagtcatttatttagggacggag 16435785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 41 - 335
Target Start/End: Complemental strand, 30736719 - 30736425
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    |||||||||||||||| ||||  |||| ||||| || |||||||| | ||||||||||||||||||||||||||||||||  |||| ||||||||| |||    
T  30736719 tactccctccgtctctcaatacttgacctatttaactatttcacacagattaagaaaagtgtaaagatgaaagaaagagaatgatatttttactgaattg 30736620  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  30736619 tccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggattacaaaaagtatttataag 30736520  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    ||||||||||||||||||||| |||||||||||||||| |||| |||| ||||||||||||||||| |||||||||||  |||| ||||| ||||    
T  30736519 gggtaaatctgtcaaattttgcttagaaatctgagaagatcaaatattgtgggacaaatatttttttcaaataggtcaagtattgagggacggag 30736425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 43 - 335
Target Start/End: Complemental strand, 13042268 - 13041978
Alignment:
Q  43 ctccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcc 142  Q
    |||||||||||  |||||||||||  |||||||  |||||||| | ||||| ||||||||||||||||||||||||||| |||| |||||||||||||||    
T  13042268 ctccctccgtccttgaataagtgatctatttgattatttcacacagattaa-aaaagtgtaaagatgaaagaaagagagtgatatttttactgagttgcc 13042170  T
Q  143 cttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggg 242  Q
    |||||||||||||  ||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  13042169 cttgtcattatttaaaaaatttt-cacttttaagtaatgattattttctttgttccactacaaactttaacatagggaccacaaaaagtatttataaggg 13042071  T
Q  243 gtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||    
T  13042070 gtaaatctgtcaaattttgcttaaaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcaaggacggag 13041978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 72 - 335
Target Start/End: Original strand, 7271109 - 7271373
Alignment:
Q  72 ttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttcactt 171  Q
    ||||| |||||||| | |||||||||||||||||||||||||||| |||  |||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  7271109 ttgacaatttcacacagattaagaaaagtgtaaagatgaaagaaatagaatgatatttttactgaattgcccttgtcattattttgaaactttttcactt 7271208  T
Q  172 ttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatc 271  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| || |||||||||    
T  7271209 ttaagtaatgattactttctttattccactacaaactttaacatggggacaacaaaaagtatttataaggggtaaatctgtcaaattctgcttagaaatc 7271308  T
Q  272 tgagaaggtcaagtattatgggacaaata-ttttttacaaataggtcacttattcagggatggag 335  Q
    | ||||||||||||||||||||||||||| |||||| |||||||||||  |||| ||||||||||    
T  7271309 taagaaggtcaagtattatgggacaaatattttttttcaaataggtcaagtattgagggatggag 7271373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 41 - 318
Target Start/End: Original strand, 31013495 - 31013772
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    |||||| |||||| || ||||  |||| ||||||||||||||| | | ||||||||||||||||| | |||||||||| |  |||| ||||||||| |||    
T  31013495 tactccttccgtccctcaatacttgacctatttgaccatttcatacagattaagaaaagtgtaaaaacgaaagaaagataatgatatttttactgaattg 31013594  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||  |||||||| ||||||||||    
T  31013595 cccttatcattattttgaaactttttcacttttaagtaatgattattttctttgttctactacaaactttaatatgggggccacaaaaaatatttataag 31013694  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtca 318  Q
    || |||||| |||||||| || |||||||||||||||| ||||||||| ||| ||||||||||||| |||||||||||    
T  31013695 ggataaatccgtcaaattctgcttagaaatctgagaagatcaagtattgtggaacaaatatttttttcaaataggtca 31013772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 93 - 335
Target Start/End: Complemental strand, 1870780 - 1870539
Alignment:
Q  93 agaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttcacttttaagtaatgattactttctt 192  Q
    |||||||| |||||||||||||||| ||  |||| ||||||| | |||||||||| ||||||||||| | ||  ||||||||||||||||||||||||||    
T  1870780 agaaaagtataaagatgaaagaaagggaatgatatttttactaaattgcccttgttattattttgaagcctt--cacttttaagtaatgattactttctt 1870683  T
Q  193 tgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgg 292  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||| || ||| |||||||||||||||||||||| | |    
T  1870682 tgttccactacaaacttttacatggagatcacaaaaagtatttataaggggtaaatttgtcaaattctgcttaaaaatctgagaaggtcaagtattgttg 1870583  T
Q  293 gacaaatatt-ttttacaaataggtcacttattcagggatggag 335  Q
     ||||||||| |||| |||||||||||  |||| ||||| ||||    
T  1870582 aacaaatatttttttccaaataggtcaagtattaagggacggag 1870539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 64 - 288
Target Start/End: Complemental strand, 13210618 - 13210397
Alignment:
Q  64 tgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactt 163  Q
    ||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||  |||  ||||||||| | |||||||| || ||||||||||||    
T  13210618 tgacatacttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagaatgattattttactgaatcgcccttgttat-attttgaaactt 13210520  T
Q  164 tttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtt 263  Q
    |  |||||||||||||  ||||||||||||||||||||||||||||| |||||| || |||||||| ||||||||| |||||||| ||||||||| || |    
T  13210519 t--cacttttaagtaagaattactttctttgttccactacaaacttttacatggagaccacaaaaaatatttataatgggtaaatttgtcaaattctgct 13210422  T
Q  264 tagaaatctgagaaggtcaagtatt 288  Q
    || |||| |||||||||||||||||    
T  13210421 taaaaatttgagaaggtcaagtatt 13210397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 72 - 314
Target Start/End: Original strand, 31833622 - 31833838
Alignment:
Q  72 ttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttcactt 171  Q
    |||||||||| ||| |||||||||||||||||||||||||||||| | |  |||| ||||||| | ||||||||   |||||||||||||   |||| ||    
T  31833622 ttgaccattttacacaaattaagaaaagtgtaaagatgaaagaaaaataatgatatttttactaaattgccctt---attattttgaaac--cttcattt 31833716  T
Q  172 ttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatc 271  Q
    |||||||||||||| |||||||||||||||||                     ||||||||||| |||||| ||||| ||||||||| || ||| |||||    
T  31833717 ttaagtaatgattattttctttgttccactac---------------------aaaaagtatttttaagggataaatttgtcaaattatgcttaaaaatc 31833795  T
Q  272 tgagaaggtcaagtattatgggacaaatattttttacaaatag 314  Q
    ||||||||||||||||  ||||||||||||||||| |||||||    
T  31833796 tgagaaggtcaagtatcgtgggacaaatatttttttcaaatag 31833838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 28541887 - 28541854
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttg 74  Q
    ||||||||||||||||||||||||||| ||||||    
T  28541887 tactccctccgtctctgaataagtgacttatttg 28541854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 41 - 328
Target Start/End: Original strand, 10017 - 10304
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    |||||||||| || || |||||||||| ||||||||||||||||| | |||||||||||||||||||| |||||||||||| |||| |||||||||||||    
T  10017 tactccctccatcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatatttttactgagttg 10116  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  10117 cccttgttattattttgaaactttttcacttttaagtaatgattactttctttgttccactataaactttaacatggggaccacaaaaagtatttataag 10216  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagg 328  Q
    || |||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  10217 ggataaatctgtcaaattttgcttagaaatatgagaaggtcaagtattgtgggacaaatattttttacaaatagatcacttattcagg 10304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 41 - 321
Target Start/End: Complemental strand, 4114 - 3834
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| |||||||| | |  ||||||||||||||||| | ||||||||||| |||||||||||| ||| |||| | |||||||||||||||     
T  4114 tactccctccgtccctgaataaataatctatttgaccatttcacacagattaagaaaagggtaaagatgaaaaaaaaagagcgctacttttactgagtta 4015  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| | |||||||||||||||||    
T  4014 cccttgtcattattttaaaactttttcacttttaagtaatgattactttctttgttccattacaaactttaacatgaggaccgcaaaaagtatttataag 3915  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcactt 321  Q
     |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3914 aggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcactt 3834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 39 - 335
Target Start/End: Complemental strand, 16646 - 16363
Alignment:
Q  39 actactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagt 138  Q
    |||| |||||||||| || |||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||| |             ||    
T  16646 actattccctccgtccctaaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtg-------------gt 16560  T
Q  139 tgcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttata 238  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  16559 tgcctttgtcattattttgaaactttttcacttttaagtaatgattactttctttgtttcactacaaactttaacatggggaccacaaaaagtatttata 16460  T
Q  239 aggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcagggatggag 335  Q
    | ||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  16459 aagggtaaatctgtcaaattttgcttagaaatttgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcagggacggag 16363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 41 - 220
Target Start/End: Original strand, 92169 - 92348
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||  ||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  92169 tactccctccgttcctgaataagtgacctatgtgaccatttcacatagattaagaaaagtgtaaagatgaaagaaagagagtgacacttttactgagttg 92268  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  92269 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggga 92348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 327
Target Start/End: Original strand, 92374 - 92406
Alignment:
Q  295 caaatattttttacaaataggtcacttattcag 327  Q
    |||||||||||||||||||| ||||||||||||    
T  92374 caaatattttttacaaatagatcacttattcag 92406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1194 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold1194
Description:

Target: scaffold1194; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 41 - 316
Target Start/End: Complemental strand, 1267 - 1004
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || ||||  | || || |||||||||||||| ||||||| | ||||||||||||||||||||||||  |||| ||||||||| |||    
T  1267 tactccctccgtccctcaatacttcacctacttgaccatttcacacaaattaa-acaagtgtaaagatgaaagaaagagaatgatatttttactgaattg 1169  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    | ||||| ||||||||||||| ||  ||||||||||||||||||         ||||||||||||||||| |||||| || |||||||||||||||||||    
T  1168 ctcttgttattattttgaaacctt--cacttttaagtaatgatt---------gttccactacaaacttttacatggagaccacaaaaagtatttataag 1080  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggt 316  Q
    |||||||| ||||||||  || ||| |||||||||||| ||||||||| ||||||||||||||||| |||||||||    
T  1079 gggtaaatttgtcaaatcctgcttaaaaatctgagaagctcaagtattgtgggacaaatattttttccaaataggt 1004  T

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