View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17241_low_24 (Length: 354)
Name: NF17241_low_24
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17241_low_24 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 3 - 346
Target Start/End: Complemental strand, 3862891 - 3862548
Alignment:
| Q |
3 |
ttgagttaggcgagaccaccttggctaattcttacggttttttgtaatcagaactatactttgggacgttgctaaccgttgttcagtaagctggaagaaa |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3862891 |
ttgagttaggcgagaccaccttggctaattcttacggttttttgtaatcagaactatactttgggacgttgctaactgttgttcagtaagctggaagaaa |
3862792 |
T |
|
| Q |
103 |
gcaaataagtatttaggatcagccacatgcttctatacggtagtttcatatgggacaaagttatctatttacttctatccagctagaacctgcttctttc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3862791 |
gcaaataagtatttaggatcagccacatgcttctatacggtaatttcatatgggacaaagttatctatttacttctatccagctagaacctgcttctttc |
3862692 |
T |
|
| Q |
203 |
ctaacccttttcttactcatgagactcctaattacattaacatcttcccatcttccaaaagatgcatacatattagacaacatcacatagacataatctt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3862691 |
ctaacccttttcttactcatgagactcctaattacattaacatcttcccatcttccaaaagatgcatacatattagacaacatcacatagacataatctt |
3862592 |
T |
|
| Q |
303 |
catccctctccagtccaatcaccttagcagctgcaatctctgct |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3862591 |
catccctctccagtccaatcaccttagcagctgcaatctctgct |
3862548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University