View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17241_low_25 (Length: 352)

Name: NF17241_low_25
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17241_low_25
NF17241_low_25
[»] chr8 (22 HSPs)
chr8 (18-308)||(43035909-43036180)
chr8 (22-197)||(4731237-4731411)
chr8 (45-197)||(4733404-4733555)
chr8 (18-134)||(42435620-42435736)
chr8 (18-134)||(30142983-30143099)
chr8 (18-156)||(15212405-15212543)
chr8 (18-157)||(4743604-4743744)
chr8 (18-103)||(27810970-27811055)
chr8 (19-134)||(40221188-40221302)
chr8 (19-108)||(22975983-22976072)
chr8 (18-156)||(12703050-12703187)
chr8 (18-111)||(11383452-11383545)
chr8 (18-156)||(1746629-1746767)
chr8 (18-98)||(19945750-19945831)
chr8 (18-98)||(31217933-31218014)
chr8 (58-158)||(33351788-33351888)
chr8 (18-98)||(34254739-34254820)
chr8 (18-132)||(1345782-1345895)
chr8 (18-64)||(4283039-4283085)
chr8 (18-111)||(10014823-10014916)
chr8 (18-98)||(19175305-19175386)
chr8 (19-98)||(42497891-42497971)
[»] chr3 (40 HSPs)
chr3 (18-190)||(44331154-44331326)
chr3 (18-166)||(34490624-34490771)
chr3 (18-156)||(49200080-49200218)
chr3 (18-166)||(31340671-31340819)
chr3 (23-197)||(44331863-44332026)
chr3 (18-166)||(46173126-46173272)
chr3 (22-156)||(5236872-5237005)
chr3 (18-158)||(29812680-29812820)
chr3 (18-111)||(6096229-6096322)
chr3 (18-156)||(7764071-7764209)
chr3 (18-97)||(4569411-4569490)
chr3 (61-156)||(23410784-23410879)
chr3 (18-104)||(51398497-51398583)
chr3 (18-111)||(55302594-55302686)
chr3 (18-156)||(7761884-7762021)
chr3 (18-110)||(43402419-43402510)
chr3 (18-111)||(27038485-27038579)
chr3 (21-75)||(40912819-40912873)
chr3 (20-110)||(43404364-43404453)
chr3 (121-162)||(30235614-30235655)
chr3 (18-98)||(45094840-45094921)
chr3 (18-157)||(36018262-36018401)
chr3 (18-92)||(5258555-5258630)
chr3 (85-134)||(24694713-24694762)
chr3 (18-158)||(29810485-29810625)
chr3 (122-167)||(47303756-47303801)
chr3 (93-157)||(23392301-23392365)
chr3 (18-156)||(35925934-35926072)
chr3 (18-156)||(37726118-37726256)
chr3 (18-111)||(8370038-8370132)
chr3 (18-111)||(16264792-16264886)
chr3 (50-156)||(40735048-40735152)
chr3 (50-111)||(40734160-40734221)
chr3 (18-75)||(54593186-54593243)
chr3 (18-89)||(40592353-40592424)
chr3 (18-98)||(9636539-9636620)
chr3 (50-111)||(27027183-27027244)
chr3 (58-111)||(30709344-30709397)
chr3 (50-111)||(47923451-47923512)
chr3 (18-156)||(33386180-33386318)
[»] scaffold0066 (1 HSPs)
scaffold0066 (18-155)||(20826-20963)
[»] chr7 (30 HSPs)
chr7 (18-200)||(48489007-48489187)
chr7 (72-197)||(48491178-48491302)
chr7 (18-158)||(47674354-47674494)
chr7 (18-158)||(47676547-47676687)
chr7 (18-158)||(43863878-43864018)
chr7 (18-156)||(27347543-27347680)
chr7 (18-111)||(4585825-4585918)
chr7 (18-157)||(6360541-6360679)
chr7 (72-166)||(34311285-34311378)
chr7 (72-156)||(1113296-1113380)
chr7 (18-156)||(23554659-23554797)
chr7 (18-104)||(18126316-18126401)
chr7 (18-111)||(2389738-2389831)
chr7 (44-157)||(48599933-48600045)
chr7 (18-157)||(29608153-29608292)
chr7 (18-157)||(14070244-14070383)
chr7 (18-157)||(14380272-14380411)
chr7 (18-98)||(4178451-4178532)
chr7 (18-111)||(32358465-32358558)
chr7 (18-156)||(19495590-19495728)
chr7 (18-105)||(4538962-4539049)
chr7 (18-80)||(2647288-2647350)
chr7 (18-156)||(26416933-26417070)
chr7 (24-105)||(4796235-4796316)
chr7 (18-156)||(21983686-21983824)
chr7 (18-67)||(31733361-31733410)
chr7 (50-134)||(25767398-25767481)
chr7 (18-152)||(2479779-2479913)
chr7 (18-111)||(49092134-49092229)
chr7 (72-157)||(2761746-2761830)
[»] chr4 (40 HSPs)
chr4 (18-172)||(54882425-54882579)
chr4 (18-156)||(6655357-6655495)
chr4 (18-166)||(26363657-26363804)
chr4 (22-157)||(5429298-5429433)
chr4 (18-157)||(26176035-26176173)
chr4 (18-156)||(52095771-52095909)
chr4 (18-157)||(2209121-2209259)
chr4 (18-157)||(37740245-37740383)
chr4 (18-153)||(50674475-50674609)
chr4 (18-159)||(12745827-12745967)
chr4 (18-107)||(9927872-9927961)
chr4 (18-153)||(46570155-46570289)
chr4 (18-159)||(12739949-12740089)
chr4 (18-159)||(12748155-12748295)
chr4 (18-158)||(34570825-34570955)
chr4 (18-98)||(56179035-56179116)
chr4 (18-94)||(35661902-35661978)
chr4 (58-156)||(3909716-3909814)
chr4 (18-156)||(6742931-6743068)
chr4 (18-106)||(5370486-5370575)
chr4 (18-94)||(41639028-41639104)
chr4 (18-75)||(50263326-50263383)
chr4 (18-94)||(27417580-27417656)
chr4 (18-104)||(5268766-5268853)
chr4 (18-89)||(36314812-36314883)
chr4 (18-89)||(36329021-36329092)
chr4 (18-117)||(40630425-40630523)
chr4 (18-64)||(29254205-29254251)
chr4 (121-162)||(8653109-8653150)
chr4 (121-162)||(8664916-8664957)
chr4 (50-111)||(16628431-16628492)
chr4 (50-110)||(3778025-3778085)
chr4 (18-88)||(8689079-8689150)
chr4 (50-156)||(13992731-13992836)
chr4 (18-134)||(5143704-5143821)
chr4 (50-156)||(5148154-5148259)
chr4 (18-64)||(54200317-54200363)
chr4 (18-98)||(25861605-25861686)
chr4 (52-156)||(31495756-31495859)
chr4 (18-89)||(5396272-5396344)
[»] scaffold0286 (1 HSPs)
scaffold0286 (18-156)||(10959-11097)
[»] chr1 (22 HSPs)
chr1 (19-157)||(4553060-4553198)
chr1 (18-157)||(11348120-11348258)
chr1 (22-172)||(192997-193147)
chr1 (18-156)||(37033698-37033836)
chr1 (18-156)||(31658858-31658995)
chr1 (18-156)||(44454779-44454916)
chr1 (18-157)||(49917968-49918106)
chr1 (18-157)||(37879520-37879658)
chr1 (18-98)||(20762348-20762429)
chr1 (45-105)||(28220665-28220725)
chr1 (45-105)||(28223860-28223920)
chr1 (18-157)||(3156486-3156624)
chr1 (121-167)||(42298592-42298638)
chr1 (18-156)||(3188970-3189108)
chr1 (18-156)||(3197787-3197925)
chr1 (18-156)||(3206605-3206743)
chr1 (29-156)||(10924843-10924969)
chr1 (44-134)||(1833163-1833252)
chr1 (18-89)||(37070211-37070283)
chr1 (18-102)||(13604191-13604276)
chr1 (18-63)||(29135762-29135807)
chr1 (104-152)||(46064562-46064610)
[»] chr2 (23 HSPs)
chr2 (18-157)||(36318420-36318560)
chr2 (18-156)||(39284516-39284654)
chr2 (18-134)||(2837255-2837370)
chr2 (18-156)||(36988486-36988624)
chr2 (51-166)||(45726416-45726530)
chr2 (18-156)||(29867499-29867637)
chr2 (18-156)||(34389294-34389432)
chr2 (121-165)||(1632369-1632413)
chr2 (19-98)||(6595406-6595486)
chr2 (18-97)||(45099432-45099512)
chr2 (18-112)||(20522666-20522761)
chr2 (18-104)||(39483320-39483407)
chr2 (18-80)||(14698600-14698662)
chr2 (18-111)||(17863856-17863950)
chr2 (18-111)||(33528183-33528277)
chr2 (18-111)||(35447512-35447605)
chr2 (18-80)||(23078062-23078125)
chr2 (18-75)||(21630389-21630446)
chr2 (18-134)||(28258715-28258831)
chr2 (78-110)||(17057725-17057757)
chr2 (78-110)||(17085708-17085740)
chr2 (18-89)||(17865621-17865693)
chr2 (50-134)||(30832986-30833069)
[»] chr6 (18 HSPs)
chr6 (18-168)||(21593056-21593205)
chr6 (18-89)||(603648-603719)
chr6 (18-97)||(9183421-9183500)
chr6 (18-105)||(22964142-22964229)
chr6 (18-105)||(23824164-23824251)
chr6 (18-134)||(3809338-3809450)
chr6 (16-157)||(17759356-17759496)
chr6 (18-134)||(21272526-21272642)
chr6 (18-134)||(10076729-10076844)
chr6 (19-133)||(33211597-33211709)
chr6 (18-75)||(24435568-24435625)
chr6 (72-156)||(33160799-33160882)
chr6 (50-156)||(22709497-22709602)
chr6 (50-156)||(5017011-5017115)
chr6 (18-104)||(31979961-31980047)
chr6 (18-83)||(26661423-26661488)
chr6 (18-83)||(26767394-26767459)
chr6 (50-111)||(31086031-31086092)
[»] chr5 (26 HSPs)
chr5 (18-159)||(32636441-32636581)
chr5 (18-104)||(42426646-42426732)
chr5 (18-104)||(42428829-42428915)
chr5 (18-112)||(5057494-5057588)
chr5 (19-111)||(37438809-37438902)
chr5 (18-156)||(30683319-30683456)
chr5 (58-159)||(28751033-28751135)
chr5 (18-159)||(16651033-16651174)
chr5 (51-111)||(213008-213068)
chr5 (18-94)||(38746451-38746527)
chr5 (18-112)||(13487868-13487960)
chr5 (26-107)||(40146717-40146798)
chr5 (18-156)||(12083693-12083831)
chr5 (18-156)||(13239372-13239509)
chr5 (18-102)||(11916540-11916625)
chr5 (72-157)||(19806046-19806130)
chr5 (142-181)||(42310463-42310502)
chr5 (18-64)||(533492-533538)
chr5 (18-64)||(535614-535660)
chr5 (72-110)||(11181412-11181450)
chr5 (18-75)||(14520673-14520731)
chr5 (18-64)||(27015025-27015071)
chr5 (18-134)||(9352872-9352988)
chr5 (52-156)||(9789663-9789766)
chr5 (72-157)||(27014954-27015038)
chr5 (72-156)||(39468976-39469059)
[»] scaffold0176 (1 HSPs)
scaffold0176 (18-110)||(17675-17767)
[»] scaffold0014 (1 HSPs)
scaffold0014 (18-111)||(80912-81005)
[»] scaffold0016 (1 HSPs)
scaffold0016 (18-98)||(114263-114343)
[»] scaffold0188 (1 HSPs)
scaffold0188 (50-156)||(17474-17579)
[»] scaffold0036 (1 HSPs)
scaffold0036 (51-110)||(86066-86124)
[»] scaffold0087 (2 HSPs)
scaffold0087 (18-102)||(36401-36486)
scaffold0087 (18-156)||(43477-43615)
[»] scaffold0006 (1 HSPs)
scaffold0006 (18-102)||(132848-132933)
[»] scaffold0002 (1 HSPs)
scaffold0002 (18-89)||(434217-434290)


Alignment Details
Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 43036180 - 43035909
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    |||||||||||||||||||| ||||||||| |||||||| ||||||||||| |||||| ||||||| ||||||||||||||||||||||||||| |||||    
T  43036180 caaccttatcctgaaaacttgcccaacaagtcgaaaatcgtgtcacgtttttccaaaatcgtgtcacgattggacaccctgcaaaacatgctcacggcat 43036081  T
Q  118 tgcgaaatcgtgacacggttgccaaatcgtgtcacgattcttcactttcaccaaactaaattttgaaggcatacacaacaaaaataaaataaaaacaagt 217  Q
    ||||||||                   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43036080 tgcgaaat-------------------cgtgtcacgattcttcactttcaccaaactaaattttgaaggcatacacaacaaaaataaaataaaaacaagt 43036000  T
Q  218 ggannnnnnnnnnnnngttggtttttagtataagcaaaatcacacgtatatgtataccaccaccagctgtttcaaagttttcataattcaa 308  Q
    |||              |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43035999 ggattttttttttttttttggtttttagtataaacaaaatcacacgtatatgtataccaccactagctgtttcaaagttttcataattcaa 43035909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 22 - 197
Target Start/End: Complemental strand, 4731411 - 4731237
Alignment:
Q  22 cttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcattgcg 121  Q
    ||||| |||||||| |  ||| ||||||||||||||||||| |||||||||||| ||||||| |||||||||||||| |||||| ||||| | |||||||    
T  4731411 cttattctgaaaacgtgtccagcaagccgaaaatcatgtcatgttttcccaaaatcgtgtcacgattggacaccctgtaaaaca-gctcacgacattgcg 4731313  T
Q  122 aaatcgtgacacggttgccaaatcgtgtcacgattcttcactttcaccaaactaaattttgaaggcatacacaaca 197  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||    
T  4731312 aaatcgtgacacggttgtcaaatcgtgtcacgattcttcactttctctaaactcaattttgaaggcatacacaaca 4731237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 45 - 197
Target Start/End: Complemental strand, 4733555 - 4733404
Alignment:
Q  45 aagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcattgcgaaatcgtgacacggttgccaaat 144  Q
    |||||||||||| |||||||||||||||||| ||||||| ||||| |||||||| |||||| ||||| | ||||||||||||||||||| ||||||||||    
T  4733555 aagccgaaaatcgtgtcacgttttcccaaaatcgtgtcacgattgaacaccctggaaaaca-gctcacgacattgcgaaatcgtgacacagttgccaaat 4733457  T
Q  145 cgtgtcacgattcttcactttcaccaaactaaattttgaaggcatacacaaca 197  Q
    ||||||| ||||||||||||||  |||||| ||||||||||||||||||||||    
T  4733456 cgtgtcatgattcttcactttcttcaaactcaattttgaaggcatacacaaca 4733404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 42435620 - 42435736
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    |||||||||||||||||||| || | |||| |||||||| |||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| |||||    
T  42435620 caaccttatcctgaaaacttgccaagcaagacgaaaatcgtgtcacgtttccccaaaatcgtgtcacgattggacaccctgcaaaacatgctcacggcat 42435719  T
Q  118 tgcgaaatcgtgacacg 134  Q
    ||| |||||||||||||    
T  42435720 tgcaaaatcgtgacacg 42435736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 30143099 - 30142983
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    |||||||||||| |||||||  ||| ||||||||||||| |||||| ||||||||||| ||||||| ||||||||||||||||||||||||||| |  ||    
T  30143099 caaccttatccttaaaacttgtccagcaagccgaaaatcgtgtcacattttcccaaaatcgtgtcacgattggacaccctgcaaaacatgctcacgaaat 30143000  T
Q  118 tgcgaaatcgtgacacg 134  Q
    |||||||||||||||||    
T  30142999 tgcgaaatcgtgacacg 30142983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 15212543 - 15212405
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaa-catgctcatggca 116  Q
    |||||||||||||||||||| | || ||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||  ||     
T  15212543 caaccttatcctgaaaacttgctcagcaagccgaaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacaccctgcaaaaccatgctcactgcc 15212444  T
Q  117 ttgcgaaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
    | |  ||||||||||||| ||||||  |||||||| ||||    
T  15212443 tag-aaaatcgtgacacgtttgccacttcgtgtcatgatt 15212405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 4743604 - 4743744
Alignment:
Q  18 caaccttatcctgaaaactttcccaa-caagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggca 116  Q
    |||||||||||||||||   | |||| |||| |||||||| |||||||||| | ||||| ||||||| ||||||||||||| ||||||||||||| ||||    
T  4743604 caaccttatcctgaaaaacgtgccaagcaagtcgaaaatcgtgtcacgtttcctcaaaatcgtgtcacgattggacacccttcaaaacatgctcacggca 4743703  T
Q  117 ttgcgaaatcgtgacacggttgccaaatcgtgtcacgattc 157  Q
    ||||||||| |||||| | ||  | ||||||||||||||||    
T  4743704 ttgcgaaattgtgacatgcttcactaatcgtgtcacgattc 4743744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 27811055 - 27810970
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaa 103  Q
    |||||||||||||||||||| |||| ||||||||||||| |||||| ||||| ||||| ||||||| |||||||||||||||||||    
T  27811055 caaccttatcctgaaaacttgcccagcaagccgaaaatcgtgtcacattttctcaaaatcgtgtcacgattggacaccctgcaaaa 27810970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 40221302 - 40221188
Alignment:
Q  19 aaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcatt 118  Q
    ||||||||||||||||| |  ||||||||| ||||||| |||||||||||||||||| |||| || |||||||||| |  ||||||||||||| |||||     
T  40221302 aaccttatcctgaaaacgtgtccaacaagctgaaaatcgtgtcacgttttcccaaaatcgtgacacgattggacactc-acaaaacatgctcacggcatg 40221204  T
Q  119 gcgaaatcgtgacacg 134  Q
     | |||||||||||||    
T  40221203 ccaaaatcgtgacacg 40221188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 22976072 - 22975983
Alignment:
Q  19 aaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgc 108  Q
    |||||||||||||||||||  | | ||||| ||||||| |||||||||||||||||| ||||||| |||||||||||||| ||| |||||    
T  22976072 aaccttatcctgaaaacttgtcaagcaagctgaaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacaccctgaaaaccatgc 22975983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 12703050 - 12703187
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    |||||||||||||||| ||| |  | ||||| ||||||| |||||||||||||||||| ||||||| |||||||||| ||| ||||||  |||  | |||    
T  12703050 caaccttatcctgaaagcttgcttagcaagctgaaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacactctg-aaaaca-actctcgacat 12703147  T
Q  118 t-gcgaaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
    | || ||||||||||||| |||||||||| ||||||||||    
T  12703148 tagcaaaatcgtgacacgcttgccaaatcatgtcacgatt 12703187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 11383545 - 11383452
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctca 111  Q
    |||||||||| |||||| || |||| ||||| ||||||| |||||||||||||||||| |||||||  ||||||||||||  ||| ||||||||    
T  11383545 caaccttatcttgaaaatttgcccagcaagctgaaaatcgtgtcacgttttcccaaaatcgtgtcacaattggacaccctaaaaaccatgctca 11383452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 1746629 - 1746767
Alignment:
Q  18 caaccttatcctgaaaa-ctttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggca 116  Q
    ||||||||||||||||| ||| |||| |||||| |||||| ||||||| |||||||||| ||||||| |||||||| ||||| |||||| ||||  | ||    
T  1746629 caaccttatcctgaaaatcttgcccagcaagccaaaaatcgtgtcacgatttcccaaaatcgtgtcacgattggacgccctg-aaaaca-gctctcgaca 1746726  T
Q  117 tt-gcgaaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
    ||  | |||||||| |||| ||||||||| |||||||||||    
T  1746727 ttaccaaaatcgtgtcacgattgccaaattgtgtcacgatt 1746767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 19945750 - 19945831
Alignment:
Q  18 caaccttatcctgaaaa-ctttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctg 98  Q
    ||||||||||||||||| ||| ||||||||||| |||||| ||||||| ||||| |||| ||||||| |||||||| |||||    
T  19945750 caaccttatcctgaaaatcttccccaacaagccaaaaatcgtgtcacgatttcctaaaatcgtgtcacgattggacgccctg 19945831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 31218014 - 31217933
Alignment:
Q  18 caaccttatcctgaaaa-ctttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctg 98  Q
    |||||||||||| |||| ||| ||||||||||| |||||| ||||||| |||||||||| |||||||  ||||||| |||||    
T  31218014 caaccttatcctaaaaatcttgcccaacaagccaaaaatcgtgtcacgatttcccaaaatcgtgtcacaattggacgccctg 31217933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 33351888 - 33351788
Alignment:
Q  58 tgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaa-catgctcatggcattgcgaaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
    ||||| |||||||||||| ||||||| ||||||||||||||||||| |||| |||  ||  |   ||||||||||||| |||| ||||||||||||||||    
T  33351888 tgtcatgttttcccaaaatcgtgtcacgattggacaccctgcaaaaccatgttcactgc-ctaaaaaatcgtgacacgcttgctaaatcgtgtcacgatt 33351790  T
Q  157 ct 158  Q
    ||    
T  33351789 ct 33351788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 34254739 - 34254820
Alignment:
Q  18 caaccttatcctgaaaa-ctttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctg 98  Q
    ||||||||||||||||| ||| |||| ||| || |||||| ||||||| |||||||||| |||||||||||| ||| |||||    
T  34254739 caaccttatcctgaaaatcttgcccagcaatccaaaaatcgtgtcacgatttcccaaaatcgtgtcatgattagacgccctg 34254820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 1345782 - 1345895
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    |||||||||||||||||| |  | | ||||| ||||||  |||||| ||||| | ||| ||||||| ||||| |||||||||| |||||||||  |||||    
T  1345782 caaccttatcctgaaaacgtgtcaagcaagctgaaaattgtgtcacattttctc-aaatcgtgtcacgattgaacaccctgcagaacatgctctcggcat 1345880  T
Q  118 tgcgaaatcgtgaca 132  Q
    ||| ||||| |||||    
T  1345881 tgcaaaatcatgaca 1345895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 4283085 - 4283039
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacg 64  Q
    |||||||||||||||||||| |||| ||||||||||||| |||||||    
T  4283085 caaccttatcctgaaaacttgcccagcaagccgaaaatcgtgtcacg 4283039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 10014916 - 10014823
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctca 111  Q
    ||||||||||||| |||| | || | || ||| |||||| ||||| | || ||||||| ||||||| ||||||| |||||| ||||||||||||    
T  10014916 caaccttatcctgtaaacgtgccaagcatgccaaaaatcgtgtcatgattgcccaaaatcgtgtcacgattggaaaccctgaaaaacatgctca 10014823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 19175386 - 19175305
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagcc-gaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctg 98  Q
    |||||||||||||||||| | |||| ||||   |||||||||||||||||||||||||| |||| || |||||  |||||||    
T  19175386 caaccttatcctgaaaacgtacccagcaagtttgaaaatcatgtcacgttttcccaaaatcgtgacacgattgagcaccctg 19175305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 42497971 - 42497891
Alignment:
Q  19 aaccttatcctgaaaa-ctttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctg 98  Q
    |||||||||||||||| ||| |||| |||||| | |||| ||||||  |||||||||| ||||||| |||||||| |||||    
T  42497971 aaccttatcctgaaaatcttgcccagcaagccaataatcgtgtcacaatttcccaaaatcgtgtcacgattggacgccctg 42497891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 44331326 - 44331154
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    |||||||||||||||||| | |||| |||||| |||||| |||||| ||||||||||| ||||||| ||||| |||||| ||||||||| ||||   |||    
T  44331326 caaccttatcctgaaaacgtacccagcaagccaaaaatcgtgtcactttttcccaaaatcgtgtcacgattgaacacccagcaaaacatactcacaacat 44331227  T
Q  118 tgcgaaatcgtgacacggttgccaaatcgtgtcacgattcttcactttcaccaaactaaattttgaaggcata 190  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||| |||||||||    
T  44331226 tgcgaaatcgtgacacggttgccaaagcgtgtcacgattcttcactttctccaaactcaatttagaaggcata 44331154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 34490771 - 34490624
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    |||||||||||||||||||| ||||| |||||||||||| ||||||||||| |||||| ||||||| ||||||| |||||||||||||| |||  | |||    
T  34490771 caaccttatcctgaaaacttgcccaataagccgaaaatcgtgtcacgtttttccaaaatcgtgtcacgattggataccctgcaaaacat-ctctcgacat 34490673  T
Q  118 tgcgaaatcgtgacacggttgccaaatcgtgtcacgattcttcactttc 166  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34490672 tgcgaaatcgtgacacggttgccaaatcgtgtcatgattcttcactttc 34490624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 49200080 - 49200218
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    |||||||||||||||||| | |||| ||||||||||||| |||||||||| ||||| | ||||||| ||||||||||||||||||||||||||| |||||    
T  49200080 caaccttatcctgaaaacatgcccagcaagccgaaaatcgtgtcacgtttccccaacatcgtgtcacgattggacaccctgcaaaacatgctcacggcat 49200179  T
Q  118 tgcgaaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
    ||| |||||||||||||  ||  ||||||||||||||||    
T  49200180 tgcaaaatcgtgacacgcctgtaaaatcgtgtcacgatt 49200218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 31340671 - 31340819
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacg-ttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggca 116  Q
    |||||||||||||||||||| |||||||||||||||||| ||||| | ||||||||||| | ||||| |||||||||||||| ||| ||||||||  ||     
T  31340671 caaccttatcctgaaaacttgcccaacaagccgaaaatcgtgtcatgtttttcccaaaatcatgtcacgattggacaccctgaaaaccatgctcactgcc 31340770  T
Q  117 ttgcgaaatcgtgacacggttgccaaatcgtgtcacgattcttcactttc 166  Q
    | |  |||||||||||||||||||||||||||||||||||||||||||||    
T  31340771 tag-aaaatcgtgacacggttgccaaatcgtgtcacgattcttcactttc 31340819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 23 - 197
Target Start/End: Original strand, 44331863 - 44332026
Alignment:
Q  23 ttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcattgcga 122  Q
    ||||| ||||||| | ||||  ||||| |||||| ||||||||||| |||||| ||||||| |||||||||||||||||||||| |||| ||||||||||    
T  44331863 ttatcttgaaaacgtacccaggaagccaaaaatcgtgtcacgtttttccaaaatcgtgtcacgattggacaccctgcaaaacatactcacggcattgcga 44331962  T
Q  123 aatcgtgacacggttgccaaatcgtgtcacgattcttcactttcaccaaactaaattttgaaggcatacacaaca 197  Q
    ||||||||||||           ||| ||||||||||||||||| ||||||| ||||||||||||||| ||||||    
T  44331963 aatcgtgacacg-----------gtgacacgattcttcactttctccaaactcaattttgaaggcataaacaaca 44332026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 46173272 - 46173126
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    |||||||||||||||||| | |||||||||||| || || ||||| |||||||||||| ||||||| |||||||||||||||||| ||||||||  || |    
T  46173272 caaccttatcctgaaaacgtgcccaacaagccggaa-tcgtgtcatgttttcccaaaatcgtgtcacgattggacaccctgcaaaccatgctcactgcct 46173174  T
Q  118 tgcgaaatcgtgacacggttgccaaatcgtgtcacgattcttcactttc 166  Q
    || |||||||||||| | ||||||| || ||||||||||||||||||||    
T  46173173 tg-gaaatcgtgacatgtttgccaattcatgtcacgattcttcactttc 46173126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 22 - 156
Target Start/End: Original strand, 5236872 - 5237005
Alignment:
Q  22 cttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcattgcg 121  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||  |||||| |||||||||| | | |||||||||||  ||||| ||     
T  5236872 cttatcctgaaaactttcccagcaagccgaaaatcgtgtcacgttttcccaaaattgtgtcacgattggacactcag-aaaacatgctctcggcatagcc 5236970  T
Q  122 aaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
    ||||||||||||| ||   ||||||||||||||||    
T  5236971 aaatcgtgacacgcttatgaaatcgtgtcacgatt 5237005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 29812820 - 29812680
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaa-catgctcatggca 116  Q
    |||||||||||||||||||| |||| |||| | |||||| |||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||  ||     
T  29812820 caaccttatcctgaaaacttgcccagcaagacaaaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacaccctgcaaaaccatgctcactgcc 29812721  T
Q  117 ttgcgaaatcgtgacacggttgccaaatcgtgtcacgattct 158  Q
    | |  ||||||||||||  |||| ||||||||||||||||||    
T  29812720 tag-aaaatcgtgacacacttgctaaatcgtgtcacgattct 29812680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 6096229 - 6096322
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctca 111  Q
    ||||||||||||||||| ||  |||| |||||||||||| |||||||||||||||||| |||||||  ||||||||||||||||| ||||||||    
T  6096229 caaccttatcctgaaaatttgtccaataagccgaaaatcgtgtcacgttttcccaaaatcgtgtcacaattggacaccctgcaaaccatgctca 6096322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 7764209 - 7764071
Alignment:
Q  18 caaccttatcctgaaaa-ctttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggca 116  Q
    |||||||||||| |||| ||| ||||||||||| |||||| |||||||||||||||||| ||||||| |||||||| ||||| |||||| ||||  | ||    
T  7764209 caaccttatcctaaaaatcttgcccaacaagccaaaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacgccctg-aaaaca-gctctcgcca 7764112  T
Q  117 ttgcgaaa-tcgtgacacggttgccaaatcgtgtcacgatt 156  Q
    || | ||| |||||||||| |||||||||||||||||||||    
T  7764111 ttaccaaactcgtgacacgcttgccaaatcgtgtcacgatt 7764071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 4569490 - 4569411
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccct 97  Q
    |||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||| | ||||| |||||||||||||    
T  4569490 caaccttatcctgaaaacttgcccagcaagccgaaaatcgtgtcacgttttcccaaaatcatgtcacgattggacaccct 4569411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 61 - 156
Target Start/End: Original strand, 23410784 - 23410879
Alignment:
Q  61 cacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcattgcgaaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
    |||||||| ||||||  |||||| ||||||||||||||||||||||||||  | |||||||||||||||||||| ||  ||||| |||||||||||    
T  23410784 cacgtttttccaaaattgtgtcacgattggacaccctgcaaaacatgctctcgacattgcgaaatcgtgacacgcttcacaaattgtgtcacgatt 23410879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 51398583 - 51398497
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaac 104  Q
    ||||| |||||| ||||||| |||||||| ||||||||  |||||||||||||||||| |||||||  |||||||||||||||||||    
T  51398583 caaccatatcctaaaaacttgcccaacaaaccgaaaattgtgtcacgttttcccaaaatcgtgtcacaattggacaccctgcaaaac 51398497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 55302594 - 55302686
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctca 111  Q
    |||||||||||||||||||| |||| ||||||||||||| | |||||||||||| ||| ||||||| ||||| |||||||| |||  |||||||    
T  55302594 caaccttatcctgaaaacttgcccagcaagccgaaaatcgtatcacgttttccc-aaatcgtgtcacgattgaacaccctgaaaacaatgctca 55302686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 7762021 - 7761884
Alignment:
Q  18 caaccttatcctgaaaa-ctttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggca 116  Q
    ||||||||||||||||| ||| |||| |||||| |||||| ||||||| |||||||||| ||||||| |||||||| ||||| |||||| |||| ||  |    
T  7762021 caaccttatcctgaaaatcttgcccagcaagccaaaaatcgtgtcacg-tttcccaaaatcgtgtcacgattggacgccctg-aaaaca-gctcttgata 7761925  T
Q  117 tt-gcgaaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
    ||  | |||| |||||||| |||||||||||||||||||||    
T  7761924 ttaccaaaatagtgacacgcttgccaaatcgtgtcacgatt 7761884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 43402419 - 43402510
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctc 110  Q
    |||||||||||||||||||| |||| ||||||||||||| ||||||||||  |||||| ||||||| ||||| ||| || | |||||||||||    
T  43402419 caaccttatcctgaaaacttgcccagcaagccgaaaatcgtgtcacgtttctccaaaatcgtgtcacgattgaacatccag-aaaacatgctc 43402510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 27038485 - 27038579
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagcc-gaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctca 111  Q
    |||||||||||||||||| | |||||||||   ||||||| |||||| ||||||||||| |||| ||||||||  ||||||||||| ||||||||    
T  27038485 caaccttatcctgaaaacatacccaacaagtttgaaaatcgtgtcacattttcccaaaatcgtgacatgattgagcaccctgcaaaccatgctca 27038579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 40912873 - 40912819
Alignment:
Q  21 ccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaa 75  Q
    |||||||| |||||||| |||||||||||||||||| ||||||||||||||||||    
T  40912873 ccttatccagaaaacttgcccaacaagccgaaaatcgtgtcacgttttcccaaaa 40912819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 43404364 - 43404453
Alignment:
Q  20 accttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctc 110  Q
    |||||||||||||||||| | || ||||||||||||| |||||||||| ||||||| ||||||| ||||| ||| || | |||||||||||    
T  43404364 accttatcctgaaaacttgctcagcaagccgaaaatcgtgtcacgtttccccaaaatcgtgtcacgattgaacatccag-aaaacatgctc 43404453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 121 - 162
Target Start/End: Complemental strand, 30235655 - 30235614
Alignment:
Q  121 gaaatcgtgacacggttgccaaatcgtgtcacgattcttcac 162  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  30235655 gaaatcgtgacacggttgccaaatcgtgtcacgattcttcac 30235614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 45094921 - 45094840
Alignment:
Q  18 caaccttatcctgaaaa-ctttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctg 98  Q
    ||||||||||||||||| ||| ||||||||||| |||||| ||||||| ||||||||||  |||||| |||||||| |||||    
T  45094921 caaccttatcctgaaaatcttgcccaacaagccaaaaatcgtgtcacgatttcccaaaattgtgtcacgattggacgccctg 45094840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 36018401 - 36018262
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctg-caaaacatgctcatggca 116  Q
    |||||||||||| ||||| | |||| ||||||||||||  |||||||||||||||||| ||||||| |||||  ||||| |  |||| |||||||  ||     
T  36018401 caaccttatcctaaaaacgtgcccagcaagccgaaaattgtgtcacgttttcccaaaatcgtgtcacgattgagcacccagaaaaaatatgctcactgcc 36018302  T
Q  117 ttgcgaaatcgtgacacggttgccaaatcgtgtcacgattc 157  Q
    | |  ||||||||||||| ||||  ||||||||||||||||    
T  36018301 tag-aaaatcgtgacacgcttgcgtaatcgtgtcacgattc 36018262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 5258555 - 5258630
Alignment:
Q  18 caaccttatcctgaaaa-ctttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggac 92  Q
    ||||||||||||||||| ||| |||| |||||| |||||| ||||||| |||||||||| ||||||| ||||||||    
T  5258555 caaccttatcctgaaaatcttgcccagcaagccaaaaatcgtgtcacgatttcccaaaatcgtgtcacgattggac 5258630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 24694762 - 24694713
Alignment:
Q  85 gattggacaccctgcaaaacatgctcatggcattgcgaaatcgtgacacg 134  Q
    ||||||||||||||||||||||||||| | |||||| |||||||||||||    
T  24694762 gattggacaccctgcaaaacatgctcacgacattgcaaaatcgtgacacg 24694713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 29810625 - 29810485
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaa-catgctcatggca 116  Q
    ||||||||||||||||| ||  ||| |||||| |||||  ||  ||||||| | |||| ||||||| ||||||||||||||||||| ||||||||  ||     
T  29810625 caaccttatcctgaaaatttgtccagcaagccaaaaattgtgctacgtttttctaaaatcgtgtcacgattggacaccctgcaaaaccatgctcaatgcc 29810526  T
Q  117 ttgcgaaatcgtgacacggttgccaaatcgtgtcacgattct 158  Q
    | |  |||| |||||||| |||| ||||| ||||||||||||    
T  29810525 tag-aaaattgtgacacgcttgctaaatcatgtcacgattct 29810485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 47303801 - 47303756
Alignment:
Q  122 aaatcgtgacacggttgccaaatcgtgtcacgattcttcactttca 167  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||    
T  47303801 aaatcgtgtcacggttgccaaatcgtgtcacgattcttcacattca 47303756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 93 - 157
Target Start/End: Original strand, 23392301 - 23392365
Alignment:
Q  93 accctgcaaaacatgctcatggcattgcgaaatcgtgacacggttgccaaatcgtgtcacgattc 157  Q
    ||||||||||||||||||  | ||||| |||||||||||||| ||  ||||||||||||||||||    
T  23392301 accctgcaaaacatgctctcgacattgtgaaatcgtgacacgcttcacaaatcgtgtcacgattc 23392365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 35925934 - 35926072
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagcc-gaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggca 116  Q
    |||||||||||||||||| | |||||||||   ||||||| |||||||||||| ||||  |||| || |||||  ||||||||||| ||||||||  ||     
T  35925934 caaccttatcctgaaaacgtacccaacaagtttgaaaatcgtgtcacgttttctcaaactcgtgacacgattgagcaccctgcaaaccatgctcactgc- 35926032  T
Q  117 ttgcgaaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
     || |||||||||||||| |    ||||||||||||||||    
T  35926033 ctgggaaatcgtgacacgttgatgaaatcgtgtcacgatt 35926072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 37726118 - 37726256
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagcc-gaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggca 116  Q
    ||||||||||||||||||||  ||||||||   ||||||| ||||||| || | ||||| ||||||| |||| ||||||||||||| || ||||| ||||    
T  37726118 caaccttatcctgaaaacttaaccaacaagtttgaaaatcgtgtcacgattccacaaaatcgtgtcacgatttgacaccctgcaaacca-gctcacggca 37726216  T
Q  117 ttgcgaaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
    |  | |||||||| |||| |  | || |||||||||||||    
T  37726217 tcacaaaatcgtgtcacgatatcaaattcgtgtcacgatt 37726256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 8370132 - 8370038
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagcc-gaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctca 111  Q
    |||||||||||| ||||| |||||| |||    ||||||| |||||||||||||||||| |||| || |||||  ||||||||||| ||||||||    
T  8370132 caaccttatcctaaaaacgttcccagcaattttgaaaatcgtgtcacgttttcccaaaatcgtgacacgattgagcaccctgcaaaccatgctca 8370038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 16264792 - 16264886
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagcc-gaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctca 111  Q
    |||||||||||||||||| | |||| | ||   ||||||| |||||||||||||||||| |||| || |||||  ||||||||||| ||||||||    
T  16264792 caaccttatcctgaaaacgtacccagctagtttgaaaatcgtgtcacgttttcccaaaatcgtgacacgattgagcaccctgcaaaccatgctca 16264886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 156
Target Start/End: Complemental strand, 40735152 - 40735048
Alignment:
Q  50 gaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcattgcgaaatcgtgacacggttgccaaatcgtgt 149  Q
    ||||||| |||||||||||||||||| |||| || |||||  ||||||||||| ||||||||  || ||| |||||||||||||| |    |||||||||    
T  40735152 gaaaatcgtgtcacgttttcccaaaatcgtgacacgattgagcaccctgcaaaccatgctcactgc-ttg-gaaatcgtgacacgttgatgaaatcgtgt 40735055  T
Q  150 cacgatt 156  Q
    |||||||    
T  40735054 cacgatt 40735048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 40734221 - 40734160
Alignment:
Q  50 gaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctca 111  Q
    ||||||| |||||||||||||||||| |||| || |||||  ||||||||||| ||||||||    
T  40734221 gaaaatcgtgtcacgttttcccaaaatcgtgacacgattgagcaccctgcaaaccatgctca 40734160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 54593243 - 54593186
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaa 75  Q
    |||||||||||||||||| | |||| ||||  ||||||| ||||||||||||||||||    
T  54593243 caaccttatcctgaaaacgtgcccagcaagttgaaaatcgtgtcacgttttcccaaaa 54593186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 40592424 - 40592353
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattg 89  Q
    |||||||||||||||||| |  ||| ||||  ||||||| |||||||||||||||||| |||| || |||||    
T  40592424 caaccttatcctgaaaacgtgtccagcaagttgaaaatcgtgtcacgttttcccaaaatcgtgacacgattg 40592353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 9636539 - 9636620
Alignment:
Q  18 caaccttatcctgaaaa-ctttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctg 98  Q
    ||||||||||||||||| |||  ||| |||||| |||||| ||||| | |||||||||| | ||||| |||||||| |||||    
T  9636539 caaccttatcctgaaaatcttgtccatcaagccaaaaatcgtgtcatgatttcccaaaatcatgtcacgattggacgccctg 9636620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 27027183 - 27027244
Alignment:
Q  50 gaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctca 111  Q
    ||||||| |||||||||||||||||| |||| || |||||  ||| ||||||| ||||||||    
T  27027183 gaaaatcgtgtcacgttttcccaaaatcgtgacacgattgagcactctgcaaaccatgctca 27027244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 30709397 - 30709344
Alignment:
Q  58 tgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctca 111  Q
    |||||||||||| ||||| |||| || ||||| |||||||||||| ||||||||    
T  30709397 tgtcacgttttctcaaaatcgtgacacgattgaacaccctgcaaaccatgctca 30709344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 47923512 - 47923451
Alignment:
Q  50 gaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctca 111  Q
    ||||||| ||||||||||||||||||  ||| || |||||  ||||||||||| ||||||||    
T  47923512 gaaaatcgtgtcacgttttcccaaaaatgtgacacgattgagcaccctgcaaaccatgctca 47923451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 33386318 - 33386180
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagcc-gaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggca 116  Q
    ||||||||||||||||||||  ||| ||||   ||||||| ||||||| || | ||||| ||||||| |||| | ||||||||||| || ||||| ||||    
T  33386318 caaccttatcctgaaaacttaaccagcaagtttgaaaatcgtgtcacgattccacaaaatcgtgtcacgatttggcaccctgcaaacca-gctcacggca 33386220  T
Q  117 ttgcgaaatcgtgacacggttgccaaa-tcgtgtcacgatt 156  Q
    |  | |||||||| ||| | ||||||| |||||||||||||    
T  33386219 tcacaaaatcgtgtcac-gatgccaaattcgtgtcacgatt 33386180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 20826 - 20963
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    ||||||||| || |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||    
T  20826 caaccttattctaaaaactttcccaacaagccgaaaatcgtgtcacgttttcccaaaatcgtgtcatgattggacaccctgcaaaacatgctcacgacat 20925  T
Q  118 tgcgaaatcgtgacacggttgccaaatcgtgtcacgat 155  Q
    ||| ||||||||||||| ||  ||||||||||||||||    
T  20926 tgcaaaatcgtgacacgcttcacaaatcgtgtcacgat 20963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 5e-44; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 48489187 - 48489007
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    ||||||||||||| || | | |||| |||||| |||| | |||||||||||||| ||| ||||||| | ||| ||||||||||||||| ||||| | |||    
T  48489187 caaccttatcctggaagcatgcccagcaagccaaaaaccgtgtcacgttttccctaaatcgtgtcacggttgaacaccctgcaaaaca-gctcacgacat 48489089  T
Q  118 tgcgaaatcgtgacacggttgccaaatcgtgtcacgattcttcactttcaccaaactaaattttgaaggcatacacaacaaaa 200  Q
    ||||||||| |||||||||||||||| ||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||    
T  48489088 tgcgaaatcatgacacggttgccaaaacgtgtcacg-ttcttcactttctccaaactcaattttgaaggcatacacaacaaaa 48489007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 72 - 197
Target Start/End: Complemental strand, 48491302 - 48491178
Alignment:
Q  72 aaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcattgcgaaatcgtgacacggttgccaaatcgtgtcacgattcttcactttcaccaa 171  Q
    |||| ||||||| ||||||||||||||||||||| ||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  48491302 aaaatcgtgtcacgattggacaccctgcaaaaca-gctcacgacattgcgaattcgtgacacggttgccaaatcgtgtcacgattcttcactttctccaa 48491204  T
Q  172 actaaattttgaaggcatacacaaca 197  Q
    ||| ||||||||||||||||||||||    
T  48491203 actcaattttgaaggcatacacaaca 48491178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 47674354 - 47674494
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaa-catgctcatggca 116  Q
    |||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||  ||     
T  47674354 caaccttatcctgaaaacttgcccagcaagccgaaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacaccctgcaaaaccatgctcactgc- 47674452  T
Q  117 ttgcgaaatcgtgacacggttgccaaatcgtgtcacgattct 158  Q
     ||  ||||||||||| | |||| ||||||||||||||||||    
T  47674453 ctggaaaatcgtgacatgcttgctaaatcgtgtcacgattct 47674494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 47676547 - 47676687
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaa-catgctcatggca 116  Q
    |||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||  ||     
T  47676547 caaccttatcctgaaaacttgcccagcaagccgaaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacaccctgcaaaaccatgctcactgcc 47676646  T
Q  117 ttgcgaaatcgtgacacggttgccaaatcgtgtcacgattct 158  Q
    | |  ||||||||||||| |||| ||||| ||||| ||||||    
T  47676647 tag-aaaatcgtgacacgcttgctaaatcatgtcatgattct 47676687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 43864018 - 43863878
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggca- 116  Q
    ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||| ||||||| |||||||||| | | |||||||||||  ||||     
T  43864018 caaccttatcctgaaaactttcctaacaaaccgaaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacactc-ggaaaacatgctctgggcac 43863920  T
Q  117 ttgcgaaatcgtgacacggttgccaaatcgtgtcacgattct 158  Q
    |  | |||| |||||||| || ||||||||||||||||||||    
T  43863919 taccaaaatggtgacacgctttccaaatcgtgtcacgattct 43863878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 27347680 - 27347543
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaaca-tgctcatggca 116  Q
    |||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||| ||||||| |||||| |||||||||||||| ||||||  ||     
T  27347680 caaccttatcctgaaaacttgcccagcaagccgaaaatcatgtca-gttttcccaaaatcgtgtcacgattgggcaccctgcaaaacagtgctcactgcc 27347582  T
Q  117 ttgcgaaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
    | |  ||||||||||||| ||  |||||||||||||||||    
T  27347581 tag-aaaatcgtgacacgcttagcaaatcgtgtcacgatt 27347543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 4585918 - 4585825
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctca 111  Q
    |||||||||  ||||||||| ||||||||||| |||||| ||||||||||||||||||  |||||| |||||||||||||||||||||||||||    
T  4585918 caaccttatattgaaaacttacccaacaagccaaaaatcttgtcacgttttcccaaaatagtgtcacgattggacaccctgcaaaacatgctca 4585825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 6360541 - 6360679
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    |||| ||||||||||||||| |||||||||||||||||| |||||||||| ||||||| |||||||  ||||| |||||||||||||| ||||  | |||    
T  6360541 caacattatcctgaaaacttgcccaacaagccgaaaatcgtgtcacgtttccccaaaatcgtgtcacaattgggcaccctgcaaaaca-gctctcgacat 6360639  T
Q  118 tgcgaaatcgtgacacggttgccaaatcgtgtcacgattc 157  Q
    ||| |||| | |||||| ||  ||||||||||||| ||||    
T  6360640 tgcaaaattgcgacacgcttcacaaatcgtgtcactattc 6360679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 34311285 - 34311378
Alignment:
Q  72 aaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcattgcgaaatcgtgacacggttgccaaatcgtgtcacgattcttcactttc 166  Q
    |||| |||||||||||||||||||||||||| ||||||||  || | |  ||||||||||||| |||||||||||||||||||||||||||||||    
T  34311285 aaaatcgtgtcatgattggacaccctgcaaaccatgctcactgcctaga-aaatcgtgacacgtttgccaaatcgtgtcacgattcttcactttc 34311378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 156
Target Start/End: Complemental strand, 1113380 - 1113296
Alignment:
Q  72 aaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcattgcgaaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
    |||| ||||||| ||||||||||| ||||||| |||||  ||||||||||||||||||||||| |||| ||||||||||||||||    
T  1113380 aaaatcgtgtcacgattggacaccatgcaaaatatgctattggcattgcgaaatcgtgacacgcttgctaaatcgtgtcacgatt 1113296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 23554797 - 23554659
Alignment:
Q  18 caaccttatcctgaaaa-ctttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggca 116  Q
    ||||||||||||||||| ||| |||| |||| |||||||| |||||||||||||||||| ||||||| |||||||||||||| |||||| ||||  | ||    
T  23554797 caaccttatcctgaaaaacttgcccagcaagtcgaaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacaccctg-aaaaca-gctctcgaca 23554700  T
Q  117 tt-gcgaaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
    ||  | ||||||||||||| ||||||||| || ||||||||    
T  23554699 ttaccaaaatcgtgacacgcttgccaaattgtatcacgatt 23554659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 18126401 - 18126316
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaac 104  Q
    |||| ||||||||||||||| |||||||||||||||||| | ||||||||| |||||| |||| || ||||||||||||||||||||    
T  18126401 caacattatcctgaaaacttgcccaacaagccgaaaatcgtatcacgtttttccaaaatcgtg-cacgattggacaccctgcaaaac 18126316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 2389831 - 2389738
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctca 111  Q
    |||||||||||||||||| |||||| ||||| ||||||| |||||| ||||| ||||| ||||||| |||||||||||||  ||| ||||||||    
T  2389831 caaccttatcctgaaaacgttcccagcaagctgaaaatcgtgtcacattttctcaaaatcgtgtcacgattggacaccctaaaaaccatgctca 2389738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 157
Target Start/End: Original strand, 48599933 - 48600045
Alignment:
Q  44 caagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcattgcgaaatcgtgacacggttgccaaa 143  Q
    ||||||||||||| |||||||||| |||| || ||||||| |||||  |||||||||||||| ||||  | |||||| ||||||||||||| ||  ||||    
T  48599933 caagccgaaaatcgtgtcacgtttccccataatcgtgtcacgattgtgcaccctgcaaaaca-gctctcgacattgcaaaatcgtgacacgcttcacaaa 48600031  T
Q  144 tcgtgtcacgattc 157  Q
    ||||||||||||||    
T  48600032 tcgtgtcacgattc 48600045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 29608292 - 29608153
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttccc-aaaaccgtgtcatgattggacaccctgcaaaacatgctcatggca 116  Q
    |||||||||||||||||||| ||||||||| |||||||  | |||| ||| ||| |||| ||||||| ||||||||||||||||||| | ||||  | ||    
T  29608292 caaccttatcctgaaaacttgcccaacaagtcgaaaattgtatcacttttccccaaaaatcgtgtcacgattggacaccctgcaaaata-gctctcgaca 29608194  T
Q  117 ttgcgaaatcgtgacacggttgccaaatcgtgtcacgattc 157  Q
    |||| ||||||||||||  ||  |||||||| |||||||||    
T  29608193 ttgcaaaatcgtgacacacttcacaaatcgtatcacgattc 29608153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 14070244 - 14070383
Alignment:
Q  18 caaccttatcctgaaaa-ctttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggca 116  Q
    |||||||||| |||||| ||| || | |||| |||||||| |||||||||||||||||| ||||||| ||||| |||||||| ||| ||||||||  ||     
T  14070244 caaccttatcttgaaaaacttgcctagcaagtcgaaaatcgtgtcacgttttcccaaaatcgtgtcacgattgaacaccctgaaaaccatgctcactgcc 14070343  T
Q  117 ttgcgaaatcgtgacacggttgccaaatcgtgtcacgattc 157  Q
    |||  |||||||| |||| |  | |||||||||||||||||    
T  14070344 ttg-aaaatcgtgccacgatgccaaaatcgtgtcacgattc 14070383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 14380272 - 14380411
Alignment:
Q  18 caaccttatcctgaaaa-ctttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggca 116  Q
    |||||||||| |||||| ||| || | |||| |||||||| |||||||||||||||||| ||||||| ||||| |||||||| ||| ||||||||  ||     
T  14380272 caaccttatcttgaaaaacttgcctagcaagtcgaaaatcgtgtcacgttttcccaaaatcgtgtcacgattgaacaccctgaaaaccatgctcactgcc 14380371  T
Q  117 ttgcgaaatcgtgacacggttgccaaatcgtgtcacgattc 157  Q
    |||  |||||||| |||| |  | |||||||||||||||||    
T  14380372 ttg-aaaatcgtgccacgatgccaaaatcgtgtcacgattc 14380411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 4178532 - 4178451
Alignment:
Q  18 caaccttatcctgaaaa-ctttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctg 98  Q
    ||||||||||||||||| ||| || |||||||| |||||| ||||||| |||||||||| ||||||| |||||||| |||||    
T  4178532 caaccttatcctgaaaatcttgcctaacaagccaaaaatcgtgtcacgatttcccaaaatcgtgtcacgattggacgccctg 4178451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 32358465 - 32358558
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctca 111  Q
    |||| ||||||||||||| | |||| ||||| ||||||  |||||||||||||||||| ||| ||| ||||||| |||||| ||| ||||||||    
T  32358465 caactttatcctgaaaacgtgcccagcaagctgaaaattgtgtcacgttttcccaaaatcgtatcacgattggataccctgaaaaccatgctca 32358558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 19495728 - 19495590
Alignment:
Q  18 caaccttatcctgaaaa-ctttcccaacaagccgaaaa-tcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggc 115  Q
    ||||||||||||||||| ||| |||| |||||| |||| || || |||||||||||||||  |||||| |||||||||||||| |||||| ||||  | |    
T  19495728 caaccttatcctgaaaatcttgcccagcaagccaaaaaatcgtggcacgttttcccaaaattgtgtcacgattggacaccctg-aaaaca-gctctcgac 19495631  T
Q  116 attgcgaaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
    ||| | |||  |||||| | |||||||||||||||||||||    
T  19495630 attaccaaaatgtgacatgcttgccaaatcgtgtcacgatt 19495590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 4538962 - 4539049
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaaca 105  Q
    ||||||| |||||||||||| |  | ||| ||||||||| |||||||||||||||||| ||||||| |||| | |||||| |||||||    
T  4538962 caaccttgtcctgaaaacttgcttagcaaaccgaaaatcgtgtcacgttttcccaaaatcgtgtcacgattaggcacccttcaaaaca 4539049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 2647350 - 2647288
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtg 80  Q
    |||||||||||||||||| | |||| ||||  |||||||||||||||||||||||||| ||||    
T  2647350 caaccttatcctgaaaacgtgcccagcaagttgaaaatcatgtcacgttttcccaaaatcgtg 2647288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 26417070 - 26416933
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    |||||||| |||||||||||  ||||||| |  |||||| |||||| ||| ||||||| |||||||  ||||||||| | | |||||||||||  |||||    
T  26417070 caaccttaccctgaaaacttgtccaacaaactaaaaatcgtgtcacatttccccaaaatcgtgtcacaattggacactcag-aaaacatgctctcggcat 26416972  T
Q  118 tgcgaaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
      | ||||||||||||| ||   ||||||||||||||||    
T  26416971 aaccaaatcgtgacacgcttatgaaatcgtgtcacgatt 26416933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 4796316 - 4796235
Alignment:
Q  24 tatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaaca 105  Q
    |||||||||||| | |||| ||||  ||||||| ||||||||||| |||||| ||||||| |||||  ||||||||||||||    
T  4796316 tatcctgaaaacgtgcccatcaagttgaaaatcgtgtcacgtttttccaaaatcgtgtcacgattgagcaccctgcaaaaca 4796235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 21983686 - 21983824
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaag-ccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggca 116  Q
    |||||||||||||||||| | |||||||||   ||||||| |||||||||||| ||||| | || |  |||||| ||||||||||| || ||||| | ||    
T  21983686 caaccttatcctgaaaacgtacccaacaagtttgaaaatcgtgtcacgttttcacaaaatcatgccgcgattggtcaccctgcaaacca-gctcacgaca 21983784  T
Q  117 ttgcgaaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
    |||| |||||||| |||| |    ||||||||||||||||    
T  21983785 ttgcaaaatcgtgtcacgatgatgaaatcgtgtcacgatt 21983824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 31733361 - 31733410
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttt 67  Q
    |||||||||||||||||||| |||| ||||||||||||  ||||||||||    
T  31733361 caaccttatcctgaaaacttgcccagcaagccgaaaattgtgtcacgttt 31733410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 134
Target Start/End: Original strand, 25767398 - 25767481
Alignment:
Q  50 gaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcattgcgaaatcgtgacacg 134  Q
    ||||||| ||||||| |||||||||| ||||||| |||| | ||||||||||| || ||||| |||||  |||||||||| ||||    
T  25767398 gaaaatcgtgtcacgatttcccaaaatcgtgtcacgatttggcaccctgcaaacca-gctcacggcatcacgaaatcgtgtcacg 25767481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 2479779 - 2479913
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaag-ccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggca 116  Q
    ||||||||||||||||||||  ||||||||   ||||||| ||| ||| |||| ||||| |||| || |||| ||||||||||||| || ||||| ||||    
T  2479779 caaccttatcctgaaaacttaaccaacaagtttgaaaatcgtgtaacgatttcacaaaatcgtgacacgatttgacaccctgcaaacca-gctcacggca 2479877  T
Q  117 ttgcgaaatcgtgacacggttgccaaatcgtgtcac 152  Q
    ||   |||||||| |||| |  | ||||||||||||    
T  2479878 ttagaaaatcgtgtcacgatgccaaaatcgtgtcac 2479913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 49092134 - 49092229
Alignment:
Q  18 caaccttatcctgaaaa-ctttcccaacaagc-cgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctca 111  Q
    ||||||||||||||||| | | |||| ||||  |||||||| |||||| ||||||||||| |||| || |||||  ||||||||||| ||||||||    
T  49092134 caaccttatcctgaaaaacgtacccagcaagttcgaaaatcgtgtcacattttcccaaaatcgtgacacgattgagcaccctgcaaaccatgctca 49092229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 157
Target Start/End: Original strand, 2761746 - 2761830
Alignment:
Q  72 aaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcattgcgaaatcgtgacacggttgccaaatcgtgtcacgattc 157  Q
    |||| ||||||| |||||| |||||||||||||| ||||  | |||||| ||||||||||| | ||  ||||||| ||||||||||    
T  2761746 aaaatcgtgtcacgattgggcaccctgcaaaaca-gctctcgacattgcaaaatcgtgacatgcttcacaaatcgggtcacgattc 2761830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 54882579 - 54882425
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    |||||||||||||||||| |  ||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| ||||||||  || |    
T  54882579 caaccttatcctgaaaacgtgtccaacaagccgaaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacaccctgcaaaccatgctcactgcct 54882480  T
Q  118 tgcgaaatcgtgacacggttgccaaatcgtgtcacgattcttcactttcaccaaa 172  Q
    |   ||||||||||| | |||||||||||||||||| |||||||||||| |||||    
T  54882479 tcaaaaatcgtgacatgattgccaaatcgtgtcacgtttcttcactttctccaaa 54882425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 6655495 - 6655357
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    |||||||||||||||||||| |||| ||| ||||||||| |||||| ||| ||||||| ||||||| ||||||||||||||||||||||||||| |||||    
T  6655495 caaccttatcctgaaaacttgcccagcaaaccgaaaatcgtgtcacatttccccaaaatcgtgtcacgattggacaccctgcaaaacatgctcacggcat 6655396  T
Q  118 tgcgaaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
    ||| |||||||||||||  |   ||||||||||||||||    
T  6655395 tgcaaaatcgtgacacgcctatgaaatcgtgtcacgatt 6655357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 26363804 - 26363657
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    |||||||||||||||||||| | || ||||||||||||| |||||||||||||||||| ||||||| |||||||||||||  |||  ||| |||  ||      
T  26363804 caaccttatcctgaaaacttgctcagcaagccgaaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacaccctaaaaacaatgttcactgc-c 26363706  T
Q  118 tgcgaaatcgtgacacggttgccaaatcgtgtcacgattcttcactttc 166  Q
    |   ||||||||||| |||||||||||||||||||||||||||||||||    
T  26363705 taaaaaatcgtgacatggttgccaaatcgtgtcacgattcttcactttc 26363657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 22 - 157
Target Start/End: Complemental strand, 5429433 - 5429298
Alignment:
Q  22 cttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcattgcg 121  Q
    |||| |||||||||||  ||||||||| ||||||| | |||||||||||||||| ||||||| |||| |||||||||||||||||||||    ||||||     
T  5429433 cttaacctgaaaacttgtccaacaagctgaaaatcgtatcacgttttcccaaaatcgtgtcacgattagacaccctgcaaaacatgctctcaacattgca 5429334  T
Q  122 aaatcgtgacacggttgccaaatcgtgtcacgattc 157  Q
    ||||||||||||| || ||||||||||||| |||||    
T  5429333 aaatcgtgacacgcttaccaaatcgtgtcatgattc 5429298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 26176035 - 26176173
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    |||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||  |||||| | |||| |||||||||||||| ||||  | |||    
T  26176035 caaccttatcctgaaaacttgcccatcaagccgaaaatcgtgtcacgttttcccaaaattgtgtcacggttgggcaccctgcaaaaca-gctctcgacat 26176133  T
Q  118 tgcgaaatcgtgacacggttgccaaatcgtgtcacgattc 157  Q
    ||| ||||||||||||| ||  ||||| ||||||||||||    
T  26176134 tgcaaaatcgtgacacgcttcacaaattgtgtcacgattc 26176173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 52095771 - 52095909
Alignment:
Q  18 caaccttatcctgaaaa-ctttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggca 116  Q
    ||||||||||||||||| ||| |||| |||||| |||||| |||||||||||||||||| ||||||| |||||||||||||| ||||||  ||| || ||    
T  52095771 caaccttatcctgaaaatcttgcccagcaagccaaaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacaccctg-aaaaca-actcttgaca 52095868  T
Q  117 ttg-cgaaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
    ||| | ||||| ||||||| |||||||||||||||||||||    
T  52095869 ttgccaaaatcatgacacgcttgccaaatcgtgtcacgatt 52095909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 2209259 - 2209121
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    |||||||||||||||||||| || | ||| ||||||||| |||||||||| ||||||| ||||||| |||||| ||| |||||||||| ||||  | |||    
T  2209259 caaccttatcctgaaaacttgcctagcaaaccgaaaatcgtgtcacgtttccccaaaatcgtgtcacgattgggcactctgcaaaaca-gctctcgacat 2209161  T
Q  118 tgcgaaatcgtgacacggttgccaaatcgtgtcacgattc 157  Q
    ||| ||||||||||||| ||   |||||||||||||||||    
T  2209160 tgcaaaatcgtgacacgcttcaaaaatcgtgtcacgattc 2209121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 37740383 - 37740245
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    |||||||||||||||||||| |||  |||||||||||||||||||||||||||||||| ||||| | |||||| |||||| ||||||| | ||  | | |    
T  37740383 caaccttatcctgaaaacttgccctgcaagccgaaaatcatgtcacgttttcccaaaatcgtgttacgattgggcaccctacaaaaca-gttctcgacgt 37740285  T
Q  118 tgcgaaatcgtgacacggttgccaaatcgtgtcacgattc 157  Q
    ||| ||||||||||||| ||   |||||||||||||||||    
T  37740284 tgcaaaatcgtgacacgcttcagaaatcgtgtcacgattc 37740245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 50674475 - 50674609
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    |||||||||||||||||| | |||| ||||| |||||||||||||||||||||||||| |||  || |||||||||| |  ||||||||||||| |||||    
T  50674475 caaccttatcctgaaaacgtgcccagcaagctgaaaatcatgtcacgttttcccaaaatcgtaacacgattggacactc-acaaaacatgctcacggcat 50674573  T
Q  118 tgcgaaatcgtgacacggttgccaaatcgtgtcacg 153  Q
      | ||||||||||||| |  |||||||||||||||    
T  50674574 gccaaaatcgtgacacgttacccaaatcgtgtcacg 50674609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 12745827 - 12745967
Alignment:
Q  18 caaccttatcctg-aaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggca 116  Q
    ||||||||||||| ||||||| |||| ||||||||||||| |||||||||||||||||| | ||||| ||||||||||||||| ||||| |||||  ||     
T  12745827 caaccttatcctggaaaacttgcccagcaagccgaaaatcgtgtcacgttttcccaaaatcatgtcacgattggacaccctgccaaaca-gctcactgcc 12745925  T
Q  117 ttgcgaaatcgtgacacggttgccaaatcgtgtcacgattctt 159  Q
    | |  |||||||| |||| |||| |||||||||||||||||||    
T  12745926 tag-aaaatcgtgtcacgcttgctaaatcgtgtcacgattctt 12745967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 9927872 - 9927961
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatg 107  Q
    ||||||||||||||||||||  ||| ||||||||||||| |||||| ||||||||||| ||||||| ||||| |||||||||||||||||    
T  9927872 caaccttatcctgaaaacttgtccagcaagccgaaaatcgtgtcacattttcccaaaatcgtgtcacgattgaacaccctgcaaaacatg 9927961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 46570155 - 46570289
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    ||||||||||||||||| || |||| ||||||||||||  |||||||||||||||||| | ||||| |||||| ||||||||| |||| ||||  | |||    
T  46570155 caaccttatcctgaaaatttgcccagcaagccgaaaattgtgtcacgttttcccaaaatcttgtcacgattgggcaccctgcagaaca-gctctcgacat 46570253  T
Q  118 tgcgaaatcgtgacacggttgccaaatcgtgtcacg 153  Q
    | | ||||||||||||| ||  ||||||||||||||    
T  46570254 ttcaaaatcgtgacacgcttcacaaatcgtgtcacg 46570289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 12739949 - 12740089
Alignment:
Q  18 caaccttatcctgaaaa-ctttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggca 116  Q
    ||||||||||||||||| ||| |||| |||||| |||||  ||| |||||||||||||| ||||||  | ||||||||||||||||||| |||||  ||     
T  12739949 caaccttatcctgaaaaacttgcccagcaagccaaaaattgtgttacgttttcccaaaatcgtgtcgcggttggacaccctgcaaaaca-gctcagtgcc 12740047  T
Q  117 ttgcgaaatcgtgacacggttgccaaatcgtgtcacgattctt 159  Q
    | |  ||||||||||||| |||| |||||||||||||||||||    
T  12740048 tag-aaaatcgtgacacgtttgctaaatcgtgtcacgattctt 12740089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 12748155 - 12748295
Alignment:
Q  18 caaccttatcctgaaaa-ctttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggca 116  Q
    ||||||||||||||||| ||| |||| |||||| |||||  ||| |||||||||||||| ||||||  | ||||||||||||||||||| |||||  ||     
T  12748155 caaccttatcctgaaaaacttgcccagcaagccaaaaattgtgttacgttttcccaaaatcgtgtcgcggttggacaccctgcaaaaca-gctcagtgcc 12748253  T
Q  117 ttgcgaaatcgtgacacggttgccaaatcgtgtcacgattctt 159  Q
    | |  ||||||||||||| |||| |||||||||||||||||||    
T  12748254 tag-aaaatcgtgacacgtttgctaaatcgtgtcacgattctt 12748295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 34570825 - 34570955
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    ||||||||||||||||||||  ||| ||||||||||||| |||||||||||||||||| ||||||| ||          |||||||||||||   ||| |    
T  34570825 caaccttatcctgaaaacttgtccagcaagccgaaaatcgtgtcacgttttcccaaaatcgtgtcacga----------tgcaaaacatgctttcggcgt 34570914  T
Q  118 tgcgaaatcgtgacacggttgccaaatcgtgtcacgattct 158  Q
    ||  ||||||||||||| |||| ||||||||||||||||||    
T  34570915 tggaaaatcgtgacacgcttgctaaatcgtgtcacgattct 34570955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 56179035 - 56179116
Alignment:
Q  18 caaccttatcctgaaaa-ctttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctg 98  Q
    ||||||||||||||||| ||| |||| |||||| ||||||||||||||||||||||||| ||||||| |||||||| |||||    
T  56179035 caaccttatcctgaaaatcttgcccagcaagccaaaaatcatgtcacgttttcccaaaatcgtgtcacgattggacgccctg 56179116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 35661978 - 35661902
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacac 94  Q
    |||||||||||||||||| | |||||||||||||||||| || ||| ||||||||||| ||||||| ||||||||||    
T  35661978 caaccttatcctgaaaacgtgcccaacaagccgaaaatcgtgacacattttcccaaaatcgtgtcacgattggacac 35661902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 156
Target Start/End: Complemental strand, 3909814 - 3909716
Alignment:
Q  58 tgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcattgcgaaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
    ||||| ||||||| |||| ||||||| |||| |||||| ||||||||||||||| | |||||| ||||||||||| | ||   ||||||||||||||||    
T  3909814 tgtcatgttttccaaaaatcgtgtcacgatttgacaccgtgcaaaacatgctcacgacattgcaaaatcgtgacatgcttcaaaaatcgtgtcacgatt 3909716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 6743068 - 6742931
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    |||||||||||||||||| | |||||||||   |||||| |||||||||||||||||| |||| || |||| | ||||||| |||||| ||||  | | |    
T  6743068 caaccttatcctgaaaacgtgcccaacaagtttaaaatcgtgtcacgttttcccaaaaacgtgccacgattaggcaccctgaaaaaca-gctctcgacgt 6742970  T
Q  118 tgcgaaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
    ||| ||||||||||||| |    ||||||||||||||||    
T  6742969 tgcaaaatcgtgacacgttgatgaaatcgtgtcacgatt 6742931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 5370486 - 5370575
Alignment:
Q  18 caaccttatcctgaaa-actttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacat 106  Q
    ||||||||||||||||  ||| |||| |||||| |||||| ||||||| |||||||||| ||||||| |||||||| ||||| |||||||    
T  5370486 caaccttatcctgaaagtcttgcccagcaagccaaaaatcgtgtcacgatttcccaaaatcgtgtcacgattggacgccctgaaaaacat 5370575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 41639104 - 41639028
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacac 94  Q
    |||||||||||||||||| | |||||||||  ||||||| ||||||||||| |||||| ||||||| ||||| ||||    
T  41639104 caaccttatcctgaaaacgtgcccaacaagttgaaaatcgtgtcacgtttttccaaaatcgtgtcacgattgaacac 41639028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 50263326 - 50263383
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaa 75  Q
    ||||||||| |||||||||| |||| ||||||||||||| ||| ||||||||||||||    
T  50263326 caaccttattctgaaaacttacccaccaagccgaaaatcgtgttacgttttcccaaaa 50263383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 27417580 - 27417656
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacac 94  Q
    |||||||||||||||| | | || ||||||  ||||||| |||||||||||||||||| ||||||| ||||| ||||    
T  27417580 caaccttatcctgaaaccgtgccgaacaagttgaaaatcgtgtcacgttttcccaaaatcgtgtcacgattgaacac 27417656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 5268853 - 5268766
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagcc-gaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaac 104  Q
    |||||||||||||||||| | |||||||||   ||||||| |||||||||||||||||| |||| || |||||  ||||||| |||||    
T  5268853 caaccttatcctgaaaacgtacccaacaagtttgaaaatcgtgtcacgttttcccaaaatcgtgacacgattgagcaccctgaaaaac 5268766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 36314883 - 36314812
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattg 89  Q
    |||||||||||||||||| | |||| ||||  ||||||| |||||||||||||||||| |||| || |||||    
T  36314883 caaccttatcctgaaaacgtgcccagcaagttgaaaatcgtgtcacgttttcccaaaatcgtgacacgattg 36314812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 36329092 - 36329021
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattg 89  Q
    |||||||||||||||||| | |||| ||||  ||||||| |||||||||||||||||| |||| || |||||    
T  36329092 caaccttatcctgaaaacgtgcccagcaagttgaaaatcgtgtcacgttttcccaaaatcgtgacacgattg 36329021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 40630523 - 40630425
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    ||||||||| |||||||  | || | ||||| ||||||| |||||||||||||||||| |||| || |||||||||| |  ||||||||||||| |||||    
T  40630523 caaccttattctgaaaatgtgcctagcaagctgaaaatcgtgtcacgttttcccaaaatcgtgacacgattggacactc-acaaaacatgctcacggcat 40630425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 29254251 - 29254205
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacg 64  Q
    ||||||||| ||||| |||| ||||||||||||||||||||||||||    
T  29254251 caaccttattctgaatacttgcccaacaagccgaaaatcatgtcacg 29254205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 162
Target Start/End: Complemental strand, 8653150 - 8653109
Alignment:
Q  121 gaaatcgtgacacggttgccaaatcgtgtcacgattcttcac 162  Q
    ||||| ||||||||||||||||||| ||||||||||||||||    
T  8653150 gaaattgtgacacggttgccaaatcatgtcacgattcttcac 8653109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 162
Target Start/End: Complemental strand, 8664957 - 8664916
Alignment:
Q  121 gaaatcgtgacacggttgccaaatcgtgtcacgattcttcac 162  Q
    ||||| ||||||||||||||||||| ||||||||||||||||    
T  8664957 gaaattgtgacacggttgccaaatcatgtcacgattcttcac 8664916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 16628492 - 16628431
Alignment:
Q  50 gaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctca 111  Q
    ||||||| |||||||||||||||||| |||| || |||||  ||||||||||| ||||||||    
T  16628492 gaaaatcgtgtcacgttttcccaaaatcgtgacacgattgagcaccctgcaaagcatgctca 16628431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 3778025 - 3778085
Alignment:
Q  50 gaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctc 110  Q
    ||||||| |||||||||||||||||| |||| || |||||  ||||||||||| |||||||    
T  3778025 gaaaatcgtgtcacgttttcccaaaatcgtgacacgattgagcaccctgcaaaccatgctc 3778085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 8689150 - 8689079
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagcc-gaaaatcatgtcacgttttcccaaaaccgtgtcatgatt 88  Q
    |||||||||||||||||| | |||| ||||   ||||||| |||||||||||||||||| ||||||| ||||    
T  8689150 caaccttatcctgaaaacgtacccagcaagtttgaaaatcgtgtcacgttttcccaaaatcgtgtcacgatt 8689079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 156
Target Start/End: Original strand, 13992731 - 13992836
Alignment:
Q  50 gaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcattgcgaaatcgtgacacggttgccaaa-tcgtg 148  Q
    ||||||| ||||||| |||||||||| ||||||| |||| | ||||||||||| || ||||| | |||  |||||||||| ||| | ||||||| |||||    
T  13992731 gaaaatcgtgtcacgatttcccaaaatcgtgtcacgatttggcaccctgcaaacca-gctcacgacatcacgaaatcgtgtcac-gatgccaaattcgtg 13992828  T
Q  149 tcacgatt 156  Q
    ||||||||    
T  13992829 tcacgatt 13992836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 5143704 - 5143821
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaag-ccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggaca-ccctgcaaaacatgctcatggc 115  Q
    |||||||||||||||||| | |||||||||   ||||||| |||||| ||||| ||||| |||| || |||||| || ||||||||| || ||||| | |    
T  5143704 caaccttatcctgaaaacgtacccaacaagtttgaaaatcgtgtcacattttcacaaaatcgtgccacgattggtcacccctgcaaacca-gctcacgac 5143802  T
Q  116 attgcgaaatcgtgacacg 134  Q
    ||||| |||||||| ||||    
T  5143803 attgcaaaatcgtgtcacg 5143821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 156
Target Start/End: Original strand, 5148154 - 5148259
Alignment:
Q  50 gaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcattgcgaaatcgtgacacggttgccaaatcgtgt 149  Q
    ||||||| ||||| |||||| ||||| |||| || |||||| |||||||| ||||  ||||| | |||||| |||||||| ||||||    |||||||||    
T  5148154 gaaaatcgtgtcaagttttcacaaaatcgtgccacgattggtcaccctgc-aaactagctcacgacattgcaaaatcgtgtcacggtgataaaatcgtgt 5148252  T
Q  150 cacgatt 156  Q
    |||||||    
T  5148253 cacgatt 5148259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 54200317 - 54200363
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacg 64  Q
    |||||||||| ||||||||| |||| ||||||||||||| |||||||    
T  54200317 caaccttatcttgaaaacttgcccagcaagccgaaaatcgtgtcacg 54200363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 25861686 - 25861605
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacg-ttttcccaaaaccgtgtcatgattggacaccctg 98  Q
    |||||||||||||||||| | |||| ||||  ||||||| ||||||| ||||||||||| |||| || |||||  |||||||    
T  25861686 caaccttatcctgaaaacatgcccagcaagttgaaaatcgtgtcacgtttttcccaaaatcgtgacacgattgagcaccctg 25861605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 156
Target Start/End: Original strand, 31495756 - 31495859
Alignment:
Q  52 aaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcattgcgaaatcgtgacacggttgccaaa-tcgtgtc 150  Q
    ||||| ||||||| ||||||| || ||||||| |||| | ||||||||||| || ||||| |||||  |||||||||| ||| | ||||||| |||||||    
T  31495756 aaatcgtgtcacgatttcccacaatcgtgtcacgatttggcaccctgcaaacca-gctcacggcatcacgaaatcgtgtcac-gatgccaaattcgtgtc 31495853  T
Q  151 acgatt 156  Q
    ||||||    
T  31495854 acgatt 31495859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 5396344 - 5396272
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaag-ccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattg 89  Q
    |||||||||||||||||| | |||||||||   ||||||| ||||||||||| |||||| |||| || |||||    
T  5396344 caaccttatcctgaaaacatacccaacaagtttgaaaatcgtgtcacgtttttccaaaatcgtgacacgattg 5396272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 11097 - 10959
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    |||||||||||||||||||| |||| ||| ||||||||| |||||| ||| ||||||| ||||||| ||||||||||||||||||||||||||| |||||    
T  11097 caaccttatcctgaaaacttgcccagcaaaccgaaaatcgtgtcacatttccccaaaatcgtgtcacgattggacaccctgcaaaacatgctcacggcat 10998  T
Q  118 tgcgaaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
    ||| |||||||||||||  |   ||||||||||||||||    
T  10997 tgcaaaatcgtgacacgcctatgaaatcgtgtcacgatt 10959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 4553060 - 4553198
Alignment:
Q  19 aaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcatt 118  Q
    ||||||||||||||||| |  | |||||| |||||||||| |||||||||| ||||| ||||||| ||||||| ||||||||||||||| ||| ||||||    
T  4553060 aaccttatcctgaaaacgtgtcaaacaagtcgaaaatcatatcacgttttctcaaaatcgtgtcacgattggataccctgcaaaacatgttcacggcatt 4553159  T
Q  119 gcgaaatcgtgacacggttgccaaatcgtgtcacgattc 157  Q
    |||||||||||||||| ||  ||||||||||||||||||    
T  4553160 gcgaaatcgtgacacgcttcacaaatcgtgtcacgattc 4553198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 11348258 - 11348120
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||  |||||| ||||||| |||| |||||||||||||||| ||||  | |||    
T  11348258 caaccttatcctgaaaacttgcccaacaagccgaaaatcgtgtcacgtttctccaaaatcgtgtcacgattagacaccctgcaaaaca-gctctcgacat 11348160  T
Q  118 tgcgaaatcgtgacacggttgccaaatcgtgtcacgattc 157  Q
    ||| ||||||||||||| ||  ||||||||||||||||||    
T  11348159 tgcaaaatcgtgacacgcttcacaaatcgtgtcacgattc 11348120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 22 - 172
Target Start/End: Complemental strand, 193147 - 192997
Alignment:
Q  22 cttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcattgcg 121  Q
    |||||||| ||||||| |||| ||||||||||||  | ||||||||| ||||||  ||||||||||||||||||||||||| ||||||||  || ||       
T  193147 cttatcctaaaaacttgcccagcaagccgaaaatggtatcacgtttttccaaaattgtgtcatgattggacaccctgcaaaccatgctcactgccttcaa 193048  T
Q  122 aaatcgtgacacggttgccaaatcgtgtcacgattcttcactttcaccaaa 172  Q
    ||||||||||||| |||||||||| ||||||| |||||||||||| |||||    
T  193047 aaatcgtgacacgattgccaaatcatgtcacgtttcttcactttctccaaa 192997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 37033698 - 37033836
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    |||||||||||||||||||| |||  |||| |||||||| ||||| |||| || |||| ||||||| ||||||||||||||||||||||||||| | |||    
T  37033698 caaccttatcctgaaaacttgccctgcaaggcgaaaatcgtgtcatgtttcccgaaaatcgtgtcacgattggacaccctgcaaaacatgctcacgacat 37033797  T
Q  118 tgcgaaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
    ||| |||||||||||||  |   ||||||||||||||||    
T  37033798 tgcaaaatcgtgacacgcctatgaaatcgtgtcacgatt 37033836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 31658995 - 31658858
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    ||||||||||||||||||||||||| |||||  |||||  |||||||||||||||||| ||||||| |||||| |||||||||||||| ||||  | |||    
T  31658995 caaccttatcctgaaaactttcccagcaagcaaaaaattgtgtcacgttttcccaaaatcgtgtcacgattgggcaccctgcaaaaca-gctctcgacat 31658897  T
Q  118 tgcgaaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
    ||| |||||||||||||  |   ||||||||||||||||    
T  31658896 tgcaaaatcgtgacacgcctatgaaatcgtgtcacgatt 31658858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 44454916 - 44454779
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    |||||||||| ||||||||| |||| ||||||||||||| |||||||||| ||||||| ||||||| |||||||||| | | |||||||||||  |||||    
T  44454916 caaccttatcttgaaaacttgcccagcaagccgaaaatcgtgtcacgtttccccaaaatcgtgtcacgattggacactcag-aaaacatgctctcggcat 44454818  T
Q  118 tgcgaaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
     || ||||||||||||| ||   ||||||||||||||||    
T  44454817 agccaaatcgtgacacgcttatgaaatcgtgtcacgatt 44454779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 49918106 - 49917968
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    |||||||||||||||||| | |||| ||||   |||||| ||||||||||| | |||| ||||||| |||||| |||||||||||||| ||||  | |||    
T  49918106 caaccttatcctgaaaacgtgcccagcaagttaaaaatcgtgtcacgtttttcgaaaatcgtgtcacgattgggcaccctgcaaaaca-gctctcgacat 49918008  T
Q  118 tgcgaaatcgtgacacggttgccaaatcgtgtcacgattc 157  Q
    ||| |||| |||||||| ||  ||||||||||||||||||    
T  49918007 tgcaaaattgtgacacgcttcacaaatcgtgtcacgattc 49917968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 37879520 - 37879658
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    |||||||||||| |||||||  |||  |||| ||||||| |||||| |||| |||||| ||||||| |||||  ||||||||||||||  |||  | |||    
T  37879520 caaccttatcctaaaaacttgtccagtaagctgaaaatcgtgtcacatttttccaaaatcgtgtcacgattgagcaccctgcaaaaca-actctcgacat 37879618  T
Q  118 tgcgaaatcgtgacacggttgccaaatcgtgtcacgattc 157  Q
    ||| ||||||||||||| ||  ||||||||||||||||||    
T  37879619 tgcaaaatcgtgacacgcttcacaaatcgtgtcacgattc 37879658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 20762429 - 20762348
Alignment:
Q  18 caaccttatcctgaaaa-ctttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctg 98  Q
    ||||||||||||||||| ||| ||||||||||| |||||| ||||||| |||||||||| ||||||| |||||||| |||||    
T  20762429 caaccttatcctgaaaatcttgcccaacaagccaaaaatcgtgtcacgatttcccaaaatcgtgtcacgattggacgccctg 20762348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 28220665 - 28220725
Alignment:
Q  45 aagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaaca 105  Q
    |||||||||||| |||||||||||||||||| ||||||| |||||| ||||||||||||||    
T  28220665 aagccgaaaatcgtgtcacgttttcccaaaatcgtgtcacgattgggcaccctgcaaaaca 28220725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 28223860 - 28223920
Alignment:
Q  45 aagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaaca 105  Q
    |||||||||||| |||||||||||||||||| ||||||| |||||| ||||||||||||||    
T  28223860 aagccgaaaatcgtgtcacgttttcccaaaatcgtgtcacgattgggcaccctgcaaaaca 28223920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 3156624 - 3156486
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    |||||||||||||||||| |  ||| ||| || |||||| ||| | |||||||||||| ||||||| |||| | |||||||||||| | ||||    |||    
T  3156624 caaccttatcctgaaaacgtgtccagcaaaccaaaaatcgtgttatgttttcccaaaatcgtgtcacgatttggcaccctgcaaaata-gctctcaacat 3156526  T
Q  118 tgcgaaatcgtgacacggttgccaaatcgtgtcacgattc 157  Q
    ||| ||||||||||||| ||  ||||||||||||||||||    
T  3156525 tgcaaaatcgtgacacgcttcacaaatcgtgtcacgattc 3156486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 167
Target Start/End: Original strand, 42298592 - 42298638
Alignment:
Q  121 gaaatcgtgacacggttgccaaatcgtgtcacgattcttcactttca 167  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  42298592 gaaatcgtgacacggttgccaaatcgtgtcatgattcttcactttca 42298638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 3189108 - 3188970
Alignment:
Q  18 caaccttatcctgaaaa-ctttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggca 116  Q
    |||||||||||| |||| ||| |||| |||| |||||||| ||||||||||||||||||  |||||| |||||||| ||||| ||||||  |||  | ||    
T  3189108 caaccttatcctaaaaaacttgcccagcaagtcgaaaatcgtgtcacgttttcccaaaattgtgtcacgattggacgccctg-aaaaca-actctcgaca 3189011  T
Q  117 tt-gcgaaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
    ||  | ||||||||||||| ||||||||| |||||||||||    
T  3189010 ttaccaaaatcgtgacacgcttgccaaattgtgtcacgatt 3188970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 3197925 - 3197787
Alignment:
Q  18 caaccttatcctgaaaa-ctttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggca 116  Q
    |||||||||||| |||| ||| |||| |||| |||||||| ||||||||||||||||||  |||||| |||||||| ||||| ||||||  |||  | ||    
T  3197925 caaccttatcctaaaaaacttgcccagcaagtcgaaaatcgtgtcacgttttcccaaaattgtgtcacgattggacgccctg-aaaaca-actctcgaca 3197828  T
Q  117 tt-gcgaaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
    ||  | ||||||||||||| ||||||||| |||||||||||    
T  3197827 ttaccaaaatcgtgacacgcttgccaaattgtgtcacgatt 3197787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 3206743 - 3206605
Alignment:
Q  18 caaccttatcctgaaaa-ctttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggca 116  Q
    |||||||||||| |||| ||| |||| |||| |||||||| ||||||||||||||||||  |||||| |||||||| ||||| ||||||  |||  | ||    
T  3206743 caaccttatcctaaaaaacttgcccagcaagtcgaaaatcgtgtcacgttttcccaaaattgtgtcacgattggacgccctg-aaaaca-actctcgaca 3206646  T
Q  117 tt-gcgaaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
    ||  | ||||||||||||| ||||||||| |||||||||||    
T  3206645 ttaccaaaatcgtgacacgcttgccaaattgtgtcacgatt 3206605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 156
Target Start/End: Complemental strand, 10924969 - 10924843
Alignment:
Q  29 tgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcattgcgaaatcgt 128  Q
    ||||||||| || | ||||||||||||| |||||| |||| |||||| ||||||| ||||||  ||||||||||||| | ||  | |||||| |||||||    
T  10924969 tgaaaacttgcctaccaagccgaaaatcgtgtcacatttttccaaaatcgtgtcacgattgggtaccctgcaaaaca-gttctcgacattgcaaaatcgt 10924871  T
Q  129 gacacggttgccaaatcgtgtcacgatt 156  Q
    ||||||  |   ||||||||||||||||    
T  10924870 gacacgcctatgaaatcgtgtcacgatt 10924843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 134
Target Start/End: Complemental strand, 1833252 - 1833163
Alignment:
Q  44 caagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcattgcgaaatcgtgacacg 134  Q
    |||||| |||||| ||| | |||||||||||| |||||||  ||||||||  ||||||||||  |||| ||||||||||||||||||||||    
T  1833252 caagccaaaaatcgtgttatgttttcccaaaatcgtgtcaccattggacaatctgcaaaaca-actcacggcattgcgaaatcgtgacacg 1833163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 37070211 - 37070283
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagcc-gaaaatcatgtcacgttttcccaaaaccgtgtcatgattg 89  Q
    |||||||||||||||||| | |||||||||   ||||||| |||||||||||||||||| |||| || |||||    
T  37070211 caaccttatcctgaaaacgtacccaacaagtttgaaaatcgtgtcacgttttcccaaaatcgtgacacgattg 37070283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 13604276 - 13604191
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagcc-gaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaa 102  Q
    ||||||||||||||||||||  ||| ||||   ||||||||||||||| || | ||||| ||||||| |||| ||||| |||||||    
T  13604276 caaccttatcctgaaaacttaaccagcaagtttgaaaatcatgtcacgattccacaaaatcgtgtcacgatttgacacactgcaaa 13604191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 29135807 - 29135762
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcac 63  Q
    |||||||||||||||||| | |||| ||||| ||||||||||||||    
T  29135807 caaccttatcctgaaaacgtgcccagcaagctgaaaatcatgtcac 29135762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 46064610 - 46064562
Alignment:
Q  104 catgctcatggcattgcgaaatcgtgacacggttgccaaatcgtgtcac 152  Q
    |||||||| ||| ||||||||||||||||||||   |||||||||||||    
T  46064610 catgctcacggccttgcgaaatcgtgacacggtacacaaatcgtgtcac 46064562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 36318420 - 36318560
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaac-cgtgtcatgattggacaccctgcaaaacatgctcatggca 116  Q
    |||||||||||||||||| |  ||| ||||||||||||| |||||||||| |||||||  ||||||| ||||||||||||||||||||||||||  | ||    
T  36318420 caaccttatcctgaaaacgtggccagcaagccgaaaatcgtgtcacgtttccccaaaaatcgtgtcacgattggacaccctgcaaaacatgctctcgaca 36318519  T
Q  117 ttgcgaaatcgtgacacggttgccaaatcgtgtcacgattc 157  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  36318520 ttgcgaaatcgtgacacgtttcacaaatcgtgtcacgattc 36318560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 39284654 - 39284516
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgc-aaaacatgctcatggca 116  Q
    ||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||| ||||||| ||| ||||||||||| ||| ||||||||  ||     
T  39284654 caaccttatcctgaaaactttcccagcaagccgaaaattgtgtcacgttttcccaaaatcgtgtcacgataggacaccctgcgaaaccatgctcactgcc 39284555  T
Q  117 ttgcgaaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
    | |  ||||||||||||| ||||||| |||||||||||||    
T  39284554 tag-aaaatcgtgacacgtttgccaattcgtgtcacgatt 39284516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 2837255 - 2837370
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    |||||||||||||||||||| |||| ||||  ||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||  |||| || |||    
T  2837255 caaccttatcctgaaaacttacccagcaaggtgaaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacaccctgcaaaac-cgctcttgacat 2837353  T
Q  118 tgcgaaatcgtgacacg 134  Q
    ||| |||||||||||||    
T  2837354 tgcaaaatcgtgacacg 2837370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 36988486 - 36988624
Alignment:
Q  18 caaccttatcctgaaaa-ctttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggca 116  Q
    ||||||||||||||||| ||| |||| |||| |||||||| |||||||||||||||||| | ||||| |||||||||||||| |||||| ||||  | ||    
T  36988486 caaccttatcctgaaaaacttgcccagcaagtcgaaaatcgtgtcacgttttcccaaaatcatgtcacgattggacaccctg-aaaaca-gctctcgaca 36988583  T
Q  117 tt-gcgaaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
    ||  | ||||||||||||| |||||||||||| ||||||||    
T  36988584 ttaccaaaatcgtgacacgcttgccaaatcgtctcacgatt 36988624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 51 - 166
Target Start/End: Complemental strand, 45726530 - 45726416
Alignment:
Q  51 aaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcattgcgaaatcgtgacacggttgccaaatcgtgtc 150  Q
    |||||| |||||| ||| ||||||| |||||||  ||||||||||||| ||| ||||||||  || | |  |||||||||||||||||||||||||||||    
T  45726530 aaaatcgtgtcacatttgcccaaaatcgtgtcacaattggacaccctgaaaatcatgctcactgcctaga-aaatcgtgacacggttgccaaatcgtgtc 45726432  T
Q  151 acgattcttcactttc 166  Q
    ||| ||||||||||||    
T  45726431 acgtttcttcactttc 45726416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 29867637 - 29867499
Alignment:
Q  18 caaccttatcctgaaaa-ctttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggca 116  Q
    |||||||||| |||||| ||| |||| |||| |||||||| |||||||||||||||||| ||||||| |||||||||||||| ||||||  |||  | ||    
T  29867637 caaccttatcttgaaaaacttgcccagcaagtcgaaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacaccctg-aaaaca-actctcgaca 29867540  T
Q  117 tt-gcgaaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
    ||  | |||||||| |||| |||||||||||||||||||||    
T  29867539 ttaccaaaatcgtgtcacgcttgccaaatcgtgtcacgatt 29867499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 34389294 - 34389432
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagcc-gaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggca 116  Q
    |||||||||||||||||| | |||| ||||   ||||||| |||||||||||||||||| ||||||| |||||||||||||| ||||||  |||  | ||    
T  34389294 caaccttatcctgaaaacgtacccagcaagtttgaaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacaccctg-aaaaca-actctcgaca 34389391  T
Q  117 tt-gcgaaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
    ||  | ||||||||||||| |||||||||||||||| ||||    
T  34389392 ttaccaaaatcgtgacacgcttgccaaatcgtgtcatgatt 34389432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 1632369 - 1632413
Alignment:
Q  121 gaaatcgtgacacggttgccaaatcgtgtcacgattcttcacttt 165  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  1632369 gaaatcgtgacacggttgccaaaacgtgtcacgattcttcacttt 1632413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 6595406 - 6595486
Alignment:
Q  19 aaccttatcctgaaaa-ctttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctg 98  Q
    |||||||||||||||| ||  |||| |||||| |||||| ||||||||||||||||||  |||||| ||||||||||||||    
T  6595406 aaccttatcctgaaaatctagcccagcaagccaaaaatcgtgtcacgttttcccaaaattgtgtcacgattggacaccctg 6595486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 45099512 - 45099432
Alignment:
Q  18 caaccttatcctgaaaa-ctttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccct 97  Q
    ||||||||||||||||| ||| |||| |||||| |||||| ||||||  ||||||||||  |||||| |||||||||||||    
T  45099512 caaccttatcctgaaaatcttgcccagcaagccaaaaatcgtgtcacaatttcccaaaattgtgtcacgattggacaccct 45099432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 20522666 - 20522761
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaa-catgctcat 112  Q
    |||||||||||||||||| | |||| ||||  ||||||| |||||||||||| ||||| |||| || |||||  ||||||| |||| |||||||||    
T  20522666 caaccttatcctgaaaacgtgcccagcaagttgaaaatcgtgtcacgttttctcaaaatcgtgacacgattgagcaccctgaaaaaccatgctcat 20522761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 39483320 - 39483407
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagcc-gaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaac 104  Q
    |||||||||||||||||| | |||||||||   ||||||| |||||||||||||||||| |||| || |||||  ||||||| |||||    
T  39483320 caaccttatcctgaaaacgtacccaacaagtttgaaaatcgtgtcacgttttcccaaaatcgtgacacgattgagcaccctgaaaaac 39483407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 14698662 - 14698600
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtg 80  Q
    |||||||||||||||||  | |||||||||  ||||||| |||||||||||||||||| ||||    
T  14698662 caaccttatcctgaaaatgtgcccaacaagttgaaaatcgtgtcacgttttcccaaaatcgtg 14698600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 17863950 - 17863856
Alignment:
Q  18 caaccttatcctgaaaa-ctttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctca 111  Q
    |||||||||||| |||| ||| |||| ||||   |||||| ||||||||||||||||||   ||||| |||||||||||||| ||| ||||||||    
T  17863950 caaccttatcctcaaaaacttgcccagcaagtaaaaaatcgtgtcacgttttcccaaaattatgtcacgattggacaccctgaaaaccatgctca 17863856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 33528277 - 33528183
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagcc-gaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctca 111  Q
    ||||||||| |||||||| | |||| ||||   ||||||| |||||||||||||||||| |||| || |||||  ||||||||||| ||||||||    
T  33528277 caaccttattctgaaaacgtacccagcaagtttgaaaatcgtgtcacgttttcccaaaatcgtgacacgattgagcaccctgcaaaccatgctca 33528183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 35447512 - 35447605
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctca 111  Q
    |||||||||| ||||||||| ||| |||| |||| |||| |||||| ||||||||||| ||||| |  |||| |||||||| |||  |||||||    
T  35447512 caaccttatcttgaaaacttgcccgacaaaccgataatcgtgtcacattttcccaaaatcgtgttacaattgaacaccctgaaaacaatgctca 35447605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 23078125 - 23078062
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagcc-gaaaatcatgtcacgttttcccaaaaccgtg 80  Q
    |||||||||||||||||| | |||||||||   ||||||| |||||||||||||||||| ||||    
T  23078125 caaccttatcctgaaaacgtacccaacaagtttgaaaatcgtgtcacgttttcccaaaatcgtg 23078062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 21630389 - 21630446
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaa 75  Q
    |||||||||||||||||| | |||| ||||  ||||||| ||||| ||||||||||||    
T  21630389 caaccttatcctgaaaacgtgcccagcaagttgaaaatcgtgtcatgttttcccaaaa 21630446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 28258831 - 28258715
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagcc-gaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggca 116  Q
    ||||||||||||||||||||  ||| ||||   ||||||| ||||||| |||| |||||  ||| || |||| ||||||||||||| || ||||| ||||    
T  28258831 caaccttatcctgaaaacttaaccagcaagtttgaaaatcgtgtcacgatttcacaaaattgtgccacgatttgacaccctgcaaacca-gctcacggca 28258733  T
Q  117 ttgcgaaatcgtgacacg 134  Q
    || | |||||||| ||||    
T  28258732 ttacaaaatcgtgtcacg 28258715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 110
Target Start/End: Original strand, 17057725 - 17057757
Alignment:
Q  78 gtgtcatgattggacaccctgcaaaacatgctc 110  Q
    |||||| ||||||||||||||||||||||||||    
T  17057725 gtgtcacgattggacaccctgcaaaacatgctc 17057757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 110
Target Start/End: Original strand, 17085708 - 17085740
Alignment:
Q  78 gtgtcatgattggacaccctgcaaaacatgctc 110  Q
    |||||| ||||||||||||||||||||||||||    
T  17085708 gtgtcacgattggacaccctgcaaaacatgctc 17085740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 17865621 - 17865693
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagcc-gaaaatcatgtcacgttttcccaaaaccgtgtcatgattg 89  Q
    |||||||||||||||||| | |||| ||||   ||||||| |||||| ||||||||||| |||| ||||||||    
T  17865621 caaccttatcctgaaaacgtacccagcaagtttgaaaatcgtgtcacattttcccaaaatcgtgacatgattg 17865693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 134
Target Start/End: Complemental strand, 30833069 - 30832986
Alignment:
Q  50 gaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcattgcgaaatcgtgacacg 134  Q
    ||||||| ||||||| |||||||| | ||||||| |||| | ||||||||||| || ||||| |||||  |||||||||| ||||    
T  30833069 gaaaatcgtgtcacgatttcccaagatcgtgtcacgatttggcaccctgcaaacca-gctcacggcatcacgaaatcgtgtcacg 30832986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 21593205 - 21593056
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    |||||||||||| ||||| | |||| ||||||||||||| ||||||||||||||||||  |||||| |||||||||||||| ||| ||||||||   | |    
T  21593205 caaccttatcctaaaaacatgcccagcaagccgaaaatcgtgtcacgttttcccaaaattgtgtcacgattggacaccctgaaaaccatgctcactacct 21593106  T
Q  118 tgcgaaatcgtgacacggttgccaaatcgtgtcacgattcttcactttcac 168  Q
     |  |||||||||||||||||||||||| ||||||||||||||||||||||    
T  21593105 ag-aaaatcgtgacacggttgccaaatcatgtcacgattcttcactttcac 21593056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 603648 - 603719
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattg 89  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||| |||||    
T  603648 caaccttatcctgaaaacttgcccagcaagccgaaaatcatgtcacgttttcccaaaatcgtgtcacgattg 603719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 9183421 - 9183500
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccct 97  Q
    |||||||||||||||||||| |||| |||| | |||||| |||||||||||||||||| ||||||| |||||||||||||    
T  9183421 caaccttatcctgaaaacttgcccagcaagtcaaaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacaccct 9183500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 22964142 - 22964229
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaaca 105  Q
    ||||||||||||||||||||  ||| |||||| |||||| |||||||||||||||||| ||| ||| ||||| |||||||||||||||    
T  22964142 caaccttatcctgaaaacttgtccagcaagccaaaaatcgtgtcacgttttcccaaaatcgtatcacgattgaacaccctgcaaaaca 22964229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 23824251 - 23824164
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaaca 105  Q
    ||||||||||||||||||||  ||| |||||| |||||| |||||||||||||||||| ||| ||| ||||| |||||||||||||||    
T  23824251 caaccttatcctgaaaacttgtccagcaagccaaaaatcgtgtcacgttttcccaaaatcgtatcacgattgaacaccctgcaaaaca 23824164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 3809338 - 3809450
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    ||||||||||||||||||||||||||   |||||||||| |||||||||| ||||||| ||||||| |||||| |||||| | ||||| ||||  | |||    
T  3809338 caaccttatcctgaaaactttcccaa---gccgaaaatcgtgtcacgtttccccaaaatcgtgtcacgattgggcacccttcgaaaca-gctctcgacat 3809433  T
Q  118 tgcgaaatcgtgacacg 134  Q
    ||| |||||||| ||||    
T  3809434 tgcaaaatcgtgtcacg 3809450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 17759496 - 17759356
Alignment:
Q  16 cacaaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggc 115  Q
    ||||||||||||||||||||||  ||| ||||||||||||  |||||||||| ||||||| ||||||| | |||| ||||||  || |||  |||  | |    
T  17759496 cacaaccttatcctgaaaacttgtccagcaagccgaaaattgtgtcacgtttccccaaaatcgtgtcacggttgggcaccctaaaataca-actctcgac 17759398  T
Q  116 attgcgaaatcgtgacacggttgccaaatcgtgtcacgattc 157  Q
    ||||| |||| |||||||| ||  ||||||||||||||||||    
T  17759397 attgcaaaattgtgacacgcttcacaaatcgtgtcacgattc 17759356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 21272642 - 21272526
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    |||||||||||||||||| | || |||| | | |||||| || |||| || ||||||| ||||||| ||||||||||||| ||||||| |||  ||| ||    
T  21272642 caaccttatcctgaaaacgtgccaaacatgtcaaaaatcgtgacacgattacccaaaatcgtgtcacgattggacacccttcaaaacaagctattggtat 21272543  T
Q  118 tgcgaaatcgtgacacg 134  Q
    ||| |||||||||||||    
T  21272542 tgccaaatcgtgacacg 21272526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 10076844 - 10076729
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    |||||||||||||||||| |   || ||||   |||||| | |||||||||||||||| ||| |||||||||| |||||||||||||| ||||  | |||    
T  10076844 caaccttatcctgaaaacgtaatcagcaagttaaaaatcgtatcacgttttcccaaaatcgtatcatgattgggcaccctgcaaaaca-gctctcgacat 10076746  T
Q  118 tgcgaaatcgtgacacg 134  Q
    ||| |||||||||||||    
T  10076745 tgcaaaatcgtgacacg 10076729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 33211597 - 33211709
Alignment:
Q  19 aaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcatt 118  Q
    |||| |||||| ||||| | ||||||||||| ||||||||| |||||||| |||||| ||||| | |||||||||| | | |||||||||||  |||||     
T  33211597 aaccatatcctaaaaacgtgcccaacaagcc-aaaatcatgacacgtttttccaaaatcgtgttacgattggacactcag-aaaacatgctctcggcata 33211694  T
Q  119 gcgaaatcgtgacac 133  Q
    || ||||||||||||    
T  33211695 gccaaatcgtgacac 33211709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 24435625 - 24435568
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaa 75  Q
    |||||||||||||||||| | || ||||||  ||||||| ||||||||||||||||||    
T  24435625 caaccttatcctgaaaacgtgccaaacaagttgaaaatcgtgtcacgttttcccaaaa 24435568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 156
Target Start/End: Original strand, 33160799 - 33160882
Alignment:
Q  72 aaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcatt-gcgaaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
    |||| ||||||| |||||||||||||| |||||| |||| || ||||  | ||||||||||||| |||||||||||||||||||||    
T  33160799 aaaatcgtgtcacgattggacaccctg-aaaaca-gctcttgacattaccaaaatcgtgacacgcttgccaaatcgtgtcacgatt 33160882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 156
Target Start/End: Original strand, 22709497 - 22709602
Alignment:
Q  50 gaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcattgcgaaatcgtgacacggttgccaaa-tcgtg 148  Q
    ||||||| ||||||| |||||||| | ||||||| |||| | ||||||||||| || |||||||||||  | |||||||| ||| ||||||||| |||||    
T  22709497 gaaaatcgtgtcacgatttcccaagatcgtgtcacgatttggcaccctgcaaacca-gctcatggcatcacaaaatcgtgtcac-gttgccaaattcgtg 22709594  T
Q  149 tcacgatt 156  Q
    ||| ||||    
T  22709595 tcatgatt 22709602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 156
Target Start/End: Complemental strand, 5017115 - 5017011
Alignment:
Q  50 gaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcattgcgaaatcgtgacacggttgccaaatcgtgt 149  Q
    ||||||| |||||||||||| ||||| |||| || |||||  ||||||||||| ||||||||  || ||| |||||||||||||| |    |||||||||    
T  5017115 gaaaatcgtgtcacgttttctcaaaatcgtgacacgattgagcaccctgcaaaccatgctcactgc-ttg-gaaatcgtgacacgttgatgaaatcgtgt 5017018  T
Q  150 cacgatt 156  Q
    |||||||    
T  5017017 cacgatt 5017011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 31979961 - 31980047
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaac 104  Q
    |||||||||||||||||| | |||| ||||  ||||||  ||||||||||| |||||| |||| || |||||  ||||||| |||||    
T  31979961 caaccttatcctgaaaacgtgcccagcaagttgaaaattgtgtcacgtttttccaaaatcgtgacacgattgatcaccctgaaaaac 31980047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 26661488 - 26661423
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtca 83  Q
    ||||||||||||||||||    ||| |||| |||||||| |||||| ||||||||||| |||||||    
T  26661488 caaccttatcctgaaaacgagtccagcaagtcgaaaatcttgtcacattttcccaaaatcgtgtca 26661423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 26767459 - 26767394
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtca 83  Q
    ||||||||||||||||||    ||| |||| |||||||| |||||| ||||||||||| |||||||    
T  26767459 caaccttatcctgaaaacgagtccagcaagtcgaaaatcttgtcacattttcccaaaatcgtgtca 26767394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 31086092 - 31086031
Alignment:
Q  50 gaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctca 111  Q
    ||||||| ||||||||||| |||||| |||| || |||||  ||||||||||| ||||||||    
T  31086092 gaaaatcgtgtcacgtttttccaaaatcgtgacacgattgagcaccctgcaaaccatgctca 31086031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 32636581 - 32636441
Alignment:
Q  18 caaccttatcctgaaaa-ctttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggca 116  Q
    ||||||||||||||||| ||| |||| |||| |||||||| || ||||||||||||||| ||||||| ||||||||||| ||||||||||| |||  ||     
T  32636581 caaccttatcctgaaaaacttgcccagcaagtcgaaaatcgtgccacgttttcccaaaatcgtgtcacgattggacaccttgcaaaacatgttcactgcc 32636482  T
Q  117 ttgcgaaatcgtgacacggttgccaaatcgtgtcacgattctt 159  Q
    |   ||||| |||||||| ||||||||||||||||||||||||    
T  32636481 t--agaaatggtgacacgcttgccaaatcgtgtcacgattctt 32636441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 42426646 - 42426732
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaac 104  Q
    |||||||||||||||||||| |||| ||| ||||||||  |||||||||||||||||| ||||||| ||||||||||||||||||||    
T  42426646 caaccttatcctgaaaacttgcccagcaaaccgaaaattgtgtcacgttttcccaaaatcgtgtcacgattggacaccctgcaaaac 42426732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 42428829 - 42428915
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaac 104  Q
    |||||||||||| ||||||| |||| |||||| |||||| |||||||||||||||||| ||||||| ||||||||||||||||||||    
T  42428829 caaccttatcctaaaaacttgcccagcaagccaaaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacaccctgcaaaac 42428915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 5057588 - 5057494
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcat 112  Q
    |||||||||||||||||||| | ||||||| |||||||  ||||||||||| |||||| ||||||| |||||||||||||| |||  ||||||||    
T  5057588 caaccttatcctgaaaacttgctcaacaagtcgaaaattgtgtcacgttttaccaaaatcgtgtcacgattggacaccctgaaaactatgctcat 5057494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 37438902 - 37438809
Alignment:
Q  19 aaccttatcctgaaaa-ctttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctca 111  Q
    |||||||||||||||| ||| ||||||||||| |||||| |||||||||||||||||| | ||||| |||||||||| ||| ||| ||||||||    
T  37438902 aaccttatcctgaaaatcttgcccaacaagccaaaaatcgtgtcacgttttcccaaaatcatgtcacgattggacactctgaaaaccatgctca 37438809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 30683319 - 30683456
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    |||||||||||||||||||| || | |||| |||||||| ||||||||||||||||||  |||||| |||||||||| ||| ||||||| |||  | |||    
T  30683319 caaccttatcctgaaaacttgcctagcaagtcgaaaatcgtgtcacgttttcccaaaattgtgtcacgattggacactctg-aaaacat-ctctcgacat 30683416  T
Q  118 t-gcgaaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
    |  | ||||||||||||| ||| ||||| |||||||||||    
T  30683417 taccaaaatcgtgacacgcttgtcaaattgtgtcacgatt 30683456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 159
Target Start/End: Original strand, 28751033 - 28751135
Alignment:
Q  58 tgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcattgcgaaatcgtgacacggttgccaa--atcgtgtcacgat 155  Q
    |||||||||||||||||| ||||||| ||||| |||||||||||||||  |||  | |||| ||||||||||| ||| |||||||  |||||||||||||    
T  28751033 tgtcacgttttcccaaaatcgtgtcacgattgaacaccctgcaaaaca-actctcgacattacgaaatcgtgaaacgattgccaaatatcgtgtcacgat 28751131  T
Q  156 tctt 159  Q
    ||||    
T  28751132 tctt 28751135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 16651033 - 16651174
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaaca-tgctcatggca 116  Q
    |||||||||||||||||| | |||||||||    ||||| |||||||||||||||||| |||||||||||||   |||||| |||||| ||||||  ||     
T  16651033 caaccttatcctgaaaacgtacccaacaagttataaatcgtgtcacgttttcccaaaatcgtgtcatgattgagtaccctgaaaaacattgctcactgc- 16651131  T
Q  117 ttgcgaaatcgtgacacggttgccaaatcgtgtcacgattctt 159  Q
     |  ||||||||| |||| |||| |||||||| ||||||||||    
T  16651132 ctcagaaatcgtgtcacgtttgctaaatcgtgacacgattctt 16651174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 213068 - 213008
Alignment:
Q  51 aaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctca 111  Q
    |||||| |||||||||||||||||| ||||||| |||||||| ||||||||| ||||||||    
T  213068 aaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacgccctgcaaaccatgctca 213008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 38746527 - 38746451
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacac 94  Q
    ||||||||||||||||||||  ||| ||||||||||||| ||||||||||| ||||||  |||||| ||||| ||||    
T  38746527 caaccttatcctgaaaacttgtccagcaagccgaaaatcgtgtcacgtttttccaaaaatgtgtcacgattgaacac 38746451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 13487960 - 13487868
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcat 112  Q
    |||||||||||||||||||| |||| |||||||||||||  ||   |||||||||||| ||||||| |||||  ||||||| |||| ||||||||    
T  13487960 caaccttatcctgaaaacttgcccagcaagccgaaaatc--gtgctgttttcccaaaatcgtgtcacgattgagcaccctgaaaaatatgctcat 13487868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 40146798 - 40146717
Alignment:
Q  26 tcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatg 107  Q
    |||||||||| |  ||||||||| |||||||  ||||| ||||||||||| ||||||| |||||||||||||| ||| ||||    
T  40146798 tcctgaaaacgtgaccaacaagctgaaaatcgagtcacattttcccaaaatcgtgtcacgattggacaccctgaaaaccatg 40146717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 12083831 - 12083693
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagcc-gaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggca 116  Q
    |||||||||||||||||| | |||||||||   ||||||| ||||||||||||||||||| ||| ||  ||||  ||||||| ||| ||||||||  ||     
T  12083831 caaccttatcctgaaaacgtacccaacaagtttgaaaatcgtgtcacgttttcccaaaactgtgacacaattgagcaccctgtaaaccatgctcactgc- 12083733  T
Q  117 ttgcgaaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
     || |||||||||||||| |    ||||||||||||||||    
T  12083732 ctgggaaatcgtgacacgttgatgaaatcgtgtcacgatt 12083693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 13239509 - 13239372
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcat 117  Q
    ||||||||||||||||||||  ||| |||| | || ||| |||||||||| ||||||| | ||||| ||||| |||||||  |||||| ||||  | |||    
T  13239509 caaccttatcctgaaaacttgtccagcaagtcaaagatcgtgtcacgtttacccaaaatcttgtcacgattgaacaccct-aaaaaca-gctctcgacat 13239412  T
Q  118 t-gcgaaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
    |  | ||||||||||||| || ||||||||||||||||||    
T  13239411 taccaaaatcgtgacacgcttaccaaatcgtgtcacgatt 13239372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 11916625 - 11916540
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagcc-gaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaa 102  Q
    |||||| ||||||||||| | |||||||||   ||||||| |||||||||||||||||| |||| || |||||  |||||||||||    
T  11916625 caacctgatcctgaaaacatacccaacaagtttgaaaatcgtgtcacgttttcccaaaatcgtgacacgattgagcaccctgcaaa 11916540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 157
Target Start/End: Complemental strand, 19806130 - 19806046
Alignment:
Q  72 aaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcattgcgaaatcgtgacacggttgccaaatcgtgtcacgattc 157  Q
    |||| ||||||| |||||| |||||||||||||| ||||  | |||||| |||||||||||||  |  ||||||||||||||||||    
T  19806130 aaaatcgtgtcacgattgggcaccctgcaaaaca-gctctcgacattgcaaaatcgtgacacgcgtcacaaatcgtgtcacgattc 19806046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 42310463 - 42310502
Alignment:
Q  142 aatcgtgtcacgattcttcactttcaccaaactaaatttt 181  Q
    ||||||||||||||||||||||||| ||||||| ||||||    
T  42310463 aatcgtgtcacgattcttcactttctccaaactcaatttt 42310502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 533538 - 533492
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacg 64  Q
    |||||||||||||||||||| |||| ||||||||||| | |||||||    
T  533538 caaccttatcctgaaaacttgcccagcaagccgaaaaccgtgtcacg 533492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 535660 - 535614
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacg 64  Q
    ||||||||||||||||||||  ||| ||||||||||||| |||||||    
T  535660 caaccttatcctgaaaacttgtccagcaagccgaaaatcgtgtcacg 535614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 11181450 - 11181412
Alignment:
Q  72 aaaaccgtgtcatgattggacaccctgcaaaacatgctc 110  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  11181450 aaaatcgtgtcacgattggacaccctgcaaaacatgctc 11181412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 14520673 - 14520731
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaag-ccgaaaatcatgtcacgttttcccaaaa 75  Q
    |||||||||||||||||| | |||||||||   ||||||| ||||||||||||||||||    
T  14520673 caaccttatcctgaaaacgtacccaacaagtttgaaaatcgtgtcacgttttcccaaaa 14520731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 27015071 - 27015025
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacg 64  Q
    |||||||||||||||||| | |||||||||| ||||||| |||||||    
T  27015071 caaccttatcctgaaaacatgcccaacaagctgaaaatcgtgtcacg 27015025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 9352988 - 9352872
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagcc-gaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggca 116  Q
    ||||||||||||||||||||  ||| ||||   ||||||| ||||||| |||| || || |||| || |||| ||||||||||||| || ||||| ||||    
T  9352988 caaccttatcctgaaaacttaaccagcaagtttgaaaatcgtgtcacgatttcacagaatcgtgccacgatttgacaccctgcaaacca-gctcacggca 9352890  T
Q  117 ttgcgaaatcgtgacacg 134  Q
    || | |||||||| ||||    
T  9352889 ttacaaaatcgtgtcacg 9352872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 156
Target Start/End: Original strand, 9789663 - 9789766
Alignment:
Q  52 aaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcattgcgaaatcgtgacacggttgccaaa-tcgtgtc 150  Q
    ||||| ||||||| ||||||| || ||||||| |||| | ||||||||||| || ||||| |||||  |||||||||| ||| | ||||||| |||||||    
T  9789663 aaatcgtgtcacgatttcccacaatcgtgtcacgatttggcaccctgcaaacca-gctcacggcatcacgaaatcgtgtcac-gatgccaaattcgtgtc 9789760  T
Q  151 acgatt 156  Q
    ||||||    
T  9789761 acgatt 9789766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 157
Target Start/End: Complemental strand, 27015038 - 27014954
Alignment:
Q  72 aaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcattgcgaaatcgtgacacggttgccaaatcgtgtcacgattc 157  Q
    |||| ||||||| |||||| |||||||||||||| ||||  | |||||| ||||| ||||||| ||  ||||| ||||||||||||    
T  27015038 aaaatcgtgtcacgattgggcaccctgcaaaaca-gctctcgacattgcaaaatcatgacacgcttcacaaatagtgtcacgattc 27014954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 156
Target Start/End: Original strand, 39468976 - 39469059
Alignment:
Q  72 aaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcattgcgaaatcgtgacacggttgccaaatcgtgtcacgatt 156  Q
    |||| ||||||| |||||| || ||||||||||| ||||  | |||||| ||||| ||||||| ||  |||||||||||||||||    
T  39468976 aaaatcgtgtcacgattgggcatcctgcaaaaca-gctctcgacattgcaaaatcatgacacgcttcacaaatcgtgtcacgatt 39469059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 17675 - 17767
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctc 110  Q
    |||||||||| ||||| ||| |||| |||||| |||||| |||||||||||||||||| ||||||| | ||||||||||||||||||||||||    
T  17675 caaccttatcatgaaagcttgcccagcaagccaaaaatcgtgtcacgttttcccaaaatcgtgtcacggttggacaccctgcaaaacatgctc 17767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 80912 - 81005
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctca 111  Q
    |||||||||||||||||||| |||| ||||||||||||| || ||||||||||||||| ||||||| ||||||| |||||| |||  |||||||    
T  80912 caaccttatcctgaaaacttgcccagcaagccgaaaatcgtgccacgttttcccaaaatcgtgtcacgattggataccctgaaaacaatgctca 81005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 114343 - 114263
Alignment:
Q  18 caaccttatcctgaaaacttt-cccaacaagccgaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctg 98  Q
    ||||||||||||||||| ||| |||| |||||| |||||| |||||||||||||||| | |||||||||||||||| |||||    
T  114343 caaccttatcctgaaaattttgcccagcaagcc-aaaatcgtgtcacgttttcccaatatcgtgtcatgattggacgccctg 114263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 156
Target Start/End: Complemental strand, 17579 - 17474
Alignment:
Q  50 gaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggcattgcgaaatcgtgacacggttgccaaa-tcgtg 148  Q
    ||||||||||||||| |||||||| | ||||||| |||| | ||||||||||| || ||||| |||||  |||||||||| ||| | ||||||| |||||    
T  17579 gaaaatcatgtcacgatttcccaagatcgtgtcacgatttggcaccctgcaaacca-gctcacggcatcacgaaatcgtgtcac-gatgccaaattcgtg 17482  T
Q  149 tcacgatt 156  Q
    ||||||||    
T  17481 tcacgatt 17474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 86066 - 86124
Alignment:
Q  51 aaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctc 110  Q
    |||||| |||||||||||||||||| |||| ||||||||  ||||||||||| |||||||    
T  86066 aaaatcgtgtcacgttttcccaaaatcgtg-catgattgagcaccctgcaaaccatgctc 86124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 36486 - 36401
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagcc-gaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaa 102  Q
    |||||||||||||||||| | |||| ||||   ||||||  |||||||||||| ||||| |||| || |||| |||||||||||||    
T  36486 caaccttatcctgaaaacgtacccagcaagtttgaaaattgtgtcacgttttcacaaaatcgtgccacgatttgacaccctgcaaa 36401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 43615 - 43477
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagcc-gaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaaacatgctcatggca 116  Q
    ||||||||||||||||||||  ||| ||||   ||||||||||||||| |||| ||||| |||  || |||| ||||||||| ||| || ||||| | ||    
T  43615 caaccttatcctgaaaacttaaccagcaagtttgaaaatcatgtcacgatttcacaaaatcgtaccacgatttgacaccctgtaaacca-gctcacgaca 43517  T
Q  117 ttgcgaaatcgtgacacggttgcca-aatcgtgtcacgatt 156  Q
    || | |||||||| ||| | ||||| |||||||||||||||    
T  43516 ttacaaaatcgtgtcac-gatgccacaatcgtgtcacgatt 43477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 132933 - 132848
Alignment:
Q  18 caaccttatcctgaaaactttcccaacaagcc-gaaaatcatgtcacgttttcccaaaaccgtgtcatgattggacaccctgcaaa 102  Q
    ||||||||||||||||||||  ||| ||||   ||||||||||||||| || | ||||| ||||||| |||| ||||| |||||||    
T  132933 caaccttatcctgaaaacttaaccagcaagtttgaaaatcatgtcacgattccacaaaatcgtgtcacgatttgacacactgcaaa 132848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 434290 - 434217
Alignment:
Q  18 caaccttatcctgaaaa-ctttcccaacaagcc-gaaaatcatgtcacgttttcccaaaaccgtgtcatgattg 89  Q
    ||||||||||||||||| ||| |||| ||||||  |||||| ||||||| |||||||||| ||||||| |||||    
T  434290 caaccttatcctgaaaatcttgcccagcaagccaaaaaatcgtgtcacgatttcccaaaatcgtgtcacgattg 434217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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