View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17241_low_28 (Length: 338)

Name: NF17241_low_28
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17241_low_28
NF17241_low_28
[»] chr7 (2 HSPs)
chr7 (1-216)||(42990319-42990534)
chr7 (300-338)||(42990618-42990656)
[»] chr8 (3 HSPs)
chr8 (303-338)||(30576637-30576672)
chr8 (303-338)||(39701005-39701040)
chr8 (306-338)||(23553478-23553510)
[»] chr5 (1 HSPs)
chr5 (303-338)||(13538585-13538620)
[»] chr3 (2 HSPs)
chr3 (303-338)||(21376687-21376722)
chr3 (300-338)||(21410274-21410312)
[»] scaffold0374 (1 HSPs)
scaffold0374 (306-338)||(16237-16269)
[»] chr6 (1 HSPs)
chr6 (306-338)||(11527651-11527683)
[»] chr2 (1 HSPs)
chr2 (306-338)||(36196472-36196504)
[»] chr1 (2 HSPs)
chr1 (306-338)||(10686682-10686714)
chr1 (306-338)||(27351175-27351207)


Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 42990319 - 42990534
Alignment:
Q  1 agaaaagtatacgtatatatatacaaattaagtaatgattttaatagtaatattaatagaagcggaggtatgaatgggaaaatgttccatttggagtaga 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42990319 agaaaagtattcgtatatatatacaaattaagtaatgattttaatagtaatattaatagaagcggaggtatgaatgggaaaatgttccatttggagtaga 42990418  T
Q  101 taagaagagaggtgagaagctaacaagaaagaacaagtgacaaaacgcgtgtaatagtctcacattagattttaggccatgtttagtgcttttagtttga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  42990419 taagaagagaggtgagaagctaacaagaaagaacaagtgacaaaacgcgtgtaatagtctcacattagattttaggccatgtttagtgcttttagttgga 42990518  T
Q  201 aagaattctcaaatta 216  Q
    ||||||| | ||||||    
T  42990519 aagaatttttaaatta 42990534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 338
Target Start/End: Original strand, 42990618 - 42990656
Alignment:
Q  300 aattatgtcattttagttgatacactatttcaccgttac 338  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  42990618 aattatgtcattttagttgatacactattttaccgttac 42990656  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 303 - 338
Target Start/End: Complemental strand, 30576672 - 30576637
Alignment:
Q  303 tatgtcattttagttgatacactatttcaccgttac 338  Q
    ||||||||||||||||||| ||||||||||||||||    
T  30576672 tatgtcattttagttgataaactatttcaccgttac 30576637  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 303 - 338
Target Start/End: Original strand, 39701005 - 39701040
Alignment:
Q  303 tatgtcattttagttgatacactatttcaccgttac 338  Q
    ||||||||||||||||||| ||||||||||||||||    
T  39701005 tatgtcattttagttgataaactatttcaccgttac 39701040  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 23553478 - 23553510
Alignment:
Q  306 gtcattttagttgatacactatttcaccgttac 338  Q
    |||||||||||||||| ||||||||||||||||    
T  23553478 gtcattttagttgataaactatttcaccgttac 23553510  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 303 - 338
Target Start/End: Original strand, 13538585 - 13538620
Alignment:
Q  303 tatgtcattttagttgatacactatttcaccgttac 338  Q
    ||||||||||||||||||| ||||||||||||||||    
T  13538585 tatgtcattttagttgataaactatttcaccgttac 13538620  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 303 - 338
Target Start/End: Original strand, 21376687 - 21376722
Alignment:
Q  303 tatgtcattttagttgatacactatttcaccgttac 338  Q
    ||||||||||||||||||| ||||||||||||||||    
T  21376687 tatgtcattttagttgataaactatttcaccgttac 21376722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 338
Target Start/End: Complemental strand, 21410312 - 21410274
Alignment:
Q  300 aattatgtcattttagttgatacactatttcaccgttac 338  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  21410312 aattatgtcattttagttgataaactatttcactgttac 21410274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0374 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0374
Description:

Target: scaffold0374; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 16237 - 16269
Alignment:
Q  306 gtcattttagttgatacactatttcaccgttac 338  Q
    |||||||||||||||| ||||||||||||||||    
T  16237 gtcattttagttgataaactatttcaccgttac 16269  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 11527651 - 11527683
Alignment:
Q  306 gtcattttagttgatacactatttcaccgttac 338  Q
    |||||||||||||||| ||||||||||||||||    
T  11527651 gtcattttagttgataaactatttcaccgttac 11527683  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 36196504 - 36196472
Alignment:
Q  306 gtcattttagttgatacactatttcaccgttac 338  Q
    |||||||||||||||| ||||||||||||||||    
T  36196504 gtcattttagttgataaactatttcaccgttac 36196472  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 10686714 - 10686682
Alignment:
Q  306 gtcattttagttgatacactatttcaccgttac 338  Q
    |||||||||||||||| ||||||||||||||||    
T  10686714 gtcattttagttgataaactatttcaccgttac 10686682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 27351175 - 27351207
Alignment:
Q  306 gtcattttagttgatacactatttcaccgttac 338  Q
    |||||||||||||||| ||||||||||||||||    
T  27351175 gtcattttagttgataaactatttcaccgttac 27351207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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