View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17241_low_3 (Length: 608)

Name: NF17241_low_3
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17241_low_3
NF17241_low_3
[»] chr5 (3 HSPs)
chr5 (245-446)||(1917592-1917793)
chr5 (20-180)||(1917858-1918029)
chr5 (512-592)||(1917446-1917526)
[»] chr1 (2 HSPs)
chr1 (287-443)||(29120805-29120963)
chr1 (517-592)||(29121038-29121113)
[»] chr6 (1 HSPs)
chr6 (98-180)||(32252551-32252633)
[»] chr8 (2 HSPs)
chr8 (97-180)||(44516194-44516285)
chr8 (266-343)||(44515990-44516069)


Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 245 - 446
Target Start/End: Complemental strand, 1917793 - 1917592
Alignment:
Q  245 ggctctacccaagagatatctaaaataaaccaccaccactgatatgacagagaaacaaaagtatatcacagcagcttcataagcgatgctccaacctgtc 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1917793 ggctctacccaagagatatctaaaataaaccaccaccactgatatgacagagaaacaaaagtatatcacagcagcttcataagcgatgctccaacctgtc 1917694  T
Q  345 ttcttcgataaaacgcaccgaaagctactcaaacccaatctgtctaaataacgatcaactgaactgccaaaaaatctcaggaaccacagtttagatcacg 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1917693 ttcttcgataaaacgcaccgaaagctactcaaacccaatctgtctaaataacgatcagctgaactgccaaaaaatctcaggaaccacagtttagatcacg 1917594  T
Q  445 ac 446  Q
    ||    
T  1917593 ac 1917592  T

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Target: chr5; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 1918029 - 1917858
Alignment:
Q  20 aatctgcattgtgtcgtgcatatcttcttcttgatgtcttcctttgcacccttaatgttggacttagnnnnnnnnn-----------ggaagagcaaaga 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     |||||||||||||    
T  1918029 aatctgcattgtgtcgtgcatatcttcttcttgatgtcttcctttgcacccttaatgttggacttatgagtttttttttttttttttggaagagcaaaga 1917930  T
Q  109 caaatattattgcattgaaacacaacacaagtacaagatatactctgtgtgtgaaaatagatacaggaagtg 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1917929 caaatattattgcattgaaacacaacacaagtacaagatatactctgtgtgtgaaaatagatacaggaagtg 1917858  T

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Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 512 - 592
Target Start/End: Complemental strand, 1917526 - 1917446
Alignment:
Q  512 gagacggacacctatacttctactcatgcagacaaggatcagaaacaccaaaacaacaatgctgaaagttcaagtcttcat 592  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1917526 gagacggacacctgtacttctactcatacagacaaggatcagaaacaccaagacaacaatgctgaaagttcaagtcttcat 1917446  T

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Target: chr1 (Bit Score: 83; Significance: 5e-39; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 287 - 443
Target Start/End: Original strand, 29120805 - 29120963
Alignment:
Q  287 tatgacagagaaacaaaag-tatatcacagcagcttcataagcgatgctccaacctgtcttcttcgataaaacgcaccgaaagctactcaaacccaatct 385  Q
    ||||||||||||||||||  ||||||||| ||||| ||||||||||||||  ||||||||||||||||||||| |||| |||||||||||||||||||||    
T  29120805 tatgacagagaaacaaaaaatatatcacaacagctccataagcgatgctctgacctgtcttcttcgataaaacacaccaaaagctactcaaacccaatct 29120904  T
Q  386 gtctaaataacgatcaactgaactgccaa-aaaatctcaggaaccacagtttagatcac 443  Q
    | ||||| ||||| || ||||||||| || |||||||||  |||||||||||| |||||    
T  29120905 gactaaaaaacgaacagctgaactgcaaataaaatctcaaaaaccacagtttaaatcac 29120963  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 517 - 592
Target Start/End: Original strand, 29121038 - 29121113
Alignment:
Q  517 ggacacctatacttctactcatgcagacaaggatcagaaacaccaaaacaacaatgctgaaagttcaagtcttcat 592  Q
    |||||||| ||||||| ||||  ||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  29121038 ggacacctgtacttctgctcaaacagacaaggatcagaaacaccaagacaacaatgctgaaaattcaagtcttcat 29121113  T

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Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 32252633 - 32252551
Alignment:
Q  98 aagagcaaagacaaatattattgcattgaaacacaacacaagtacaagatatactctgtgtgtgaaaatagatacaggaagtg 180  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||  |||||| ||||||||||||||||||||| |||||    
T  32252633 aagagcaaagacaaatattattgcattaaaacacaacacaaatacaatgtatactttgtgtgtgaaaatagatacagaaagtg 32252551  T

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Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 97 - 180
Target Start/End: Complemental strand, 44516285 - 44516194
Alignment:
Q  97 gaagagcaaagacaaatattattgcattgaaacacaacacaagta--------caagatatactctgtgtgtgaaaatagatacaggaagtg 180  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||        |||| |||||| |||||||||||||||||||||||||||    
T  44516285 gaagagcaaagacaaattttattgaattgaaacacaacacaagtacaagtgtacaaggtatactttgtgtgtgaaaatagatacaggaagtg 44516194  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 44516069 - 44515990
Alignment:
Q  266 aaaataaaccaccaccactgatatgacagagaaac--aaaagtatatcacagcagcttcataagcgatgctccaacctgt 343  Q
    ||||||||||||||||||  |||||||||| ||||  |||| |||||||||   ||| ||||||||||||||| ||||||    
T  44516069 aaaataaaccaccaccacaaatatgacagacaaacaaaaaaatatatcacaatggctccataagcgatgctccgacctgt 44515990  T

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