View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17241_low_30 (Length: 326)

Name: NF17241_low_30
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17241_low_30
NF17241_low_30
[»] scaffold0103 (1 HSPs)
scaffold0103 (24-315)||(28822-29112)
[»] chr5 (5 HSPs)
chr5 (47-122)||(30293819-30293894)
chr5 (43-123)||(11815952-11816032)
chr5 (41-80)||(12187267-12187306)
chr5 (46-123)||(41645073-41645150)
chr5 (47-123)||(30840594-30840670)
[»] chr2 (6 HSPs)
chr2 (44-126)||(19049984-19050066)
chr2 (44-123)||(18717891-18717970)
chr2 (44-123)||(4978745-4978824)
chr2 (40-123)||(40574132-40574215)
chr2 (49-77)||(4557659-4557687)
chr2 (51-123)||(29526301-29526373)
[»] chr1 (8 HSPs)
chr1 (43-122)||(5069538-5069617)
chr1 (57-123)||(10226468-10226534)
chr1 (49-123)||(8001745-8001819)
chr1 (49-122)||(11449102-11449175)
chr1 (24-123)||(13969072-13969171)
chr1 (49-123)||(26829533-26829607)
chr1 (49-123)||(33148129-33148203)
chr1 (46-123)||(48579937-48580014)
[»] chr8 (8 HSPs)
chr8 (49-123)||(44648936-44649010)
chr8 (46-123)||(20542428-20542505)
chr8 (49-122)||(41726938-41727011)
chr8 (49-123)||(18200679-18200753)
chr8 (49-119)||(42361512-42361582)
chr8 (47-123)||(17720174-17720250)
chr8 (63-119)||(25250345-25250401)
chr8 (52-92)||(10652531-10652571)
[»] chr7 (8 HSPs)
chr7 (46-123)||(19677036-19677113)
chr7 (52-123)||(8896599-8896670)
chr7 (49-123)||(37928341-37928415)
chr7 (251-309)||(12683588-12683649)
chr7 (46-123)||(16685773-16685851)
chr7 (46-123)||(17660009-17660087)
chr7 (49-123)||(25530543-25530617)
chr7 (49-113)||(1554017-1554081)
[»] chr3 (12 HSPs)
chr3 (42-123)||(4020139-4020220)
chr3 (47-123)||(48338854-48338930)
chr3 (44-123)||(29032453-29032532)
chr3 (24-123)||(49261821-49261920)
chr3 (49-123)||(44698259-44698333)
chr3 (53-123)||(55446773-55446843)
chr3 (49-126)||(8326175-8326252)
chr3 (23-123)||(50958901-50959001)
chr3 (44-123)||(635698-635777)
chr3 (49-123)||(6785792-6785866)
chr3 (27-121)||(38359090-38359184)
chr3 (144-201)||(48338779-48338836)
[»] chr4 (3 HSPs)
chr4 (58-121)||(22611904-22611967)
chr4 (65-123)||(37183079-37183137)
chr4 (51-120)||(13967889-13967958)


Alignment Details
Target: scaffold0103 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 24 - 315
Target Start/End: Original strand, 28822 - 29112
Alignment:
Q  24 ttgctaactactgtctttgggacattggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattacac 123  Q
    ||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28822 ttgctaactactgtctttggggcattgattaaggaatctacaaatagaaattttgtcttatagatataatatgttctttttgataaagtaatgattacac 28921  T
Q  124 cacnnnnnnnnatnnnnnnnttacttgttttggatgcttaactaattcccctagagaactctttagcattctccttataattatatatgatatatgtatt 223  Q
    |||        ||       |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28922 cacttttttt-ataaaaaaattacttgttttggatgcttaactaattctcttagagaactctttagcattctccttataattatatattatatatgtatt 29020  T
Q  224 ttgatgtttttctcaacaacaaaaattgtattttgatgttcaaaataatgcaattaattatgttaaacttttttatttggtcatttcttcat 315  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29021 ttgatgtttctctcaacaacaaaaattgtattttgatgttcaaaataatgcaattgattatgttaaacttttttatttggtcatttcttcat 29112  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 47 - 122
Target Start/End: Original strand, 30293819 - 30293894
Alignment:
Q  47 attggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattaca 122  Q
    |||||||||||||||||||||||||||||||||| || | |||||| |||||  ||||||| ||||||||||||||    
T  30293819 attggttaaagaatctacaaatagaaattttgtcttaaaaatataagatgttacttttgatcaagtaatgattaca 30293894  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 11816032 - 11815952
Alignment:
Q  43 ggacattggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattacac 123  Q
    ||||| ||||||| ||||||| |||||||||||||||| |  | |||||| |||||  |||||||||||||||||||||||    
T  11816032 ggacaatggttaatgaatctaaaaatagaaattttgtcttgaaaatataagatgttacttttgataaagtaatgattacac 11815952  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 80
Target Start/End: Complemental strand, 12187306 - 12187267
Alignment:
Q  41 tgggacattggttaaagaatctacaaatagaaattttgtc 80  Q
    |||| ||||||||||||||||||||||||||| |||||||    
T  12187306 tggggcattggttaaagaatctacaaatagaatttttgtc 12187267  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 41645150 - 41645073
Alignment:
Q  46 cattggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattacac 123  Q
    |||||||||||||||||| ||||| ||||||||||    | |||||| || || ||||| || |||||||||||||||    
T  41645150 cattggttaaagaatctataaataaaaattttgtctagaaaatataagatattattttttatcaagtaatgattacac 41645073  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 123
Target Start/End: Original strand, 30840594 - 30840670
Alignment:
Q  47 attggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattacac 123  Q
    ||||||||| |||||||| || ||||| |||||| |  | |||||| |||||  ||||||| |||||||||||||||    
T  30840594 attggttaaggaatctactaacagaaaatttgtcttgaaaatataagatgttacttttgatcaagtaatgattacac 30840670  T

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Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 19049984 - 19050066
Alignment:
Q  44 gacattggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattacaccac 126  Q
    |||||||||||||||||| ||| ||||||||||||||||| | |||||| || || |||||||| ||||||| ||||||||||    
T  19049984 gacattggttaaagaatccacatatagaaattttgtcatagaaatataaaatattatttttgatcaagtaataattacaccac 19050066  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 18717970 - 18717891
Alignment:
Q  44 gacattggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattacac 123  Q
    |||||||||||| |||| |||||||||||||||| |  || | |||||| |||||  ||||||| |||||||||||||||    
T  18717970 gacattggttaaggaatttacaaatagaaattttattttaaaaatataagatgttacttttgatcaagtaatgattacac 18717891  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 123
Target Start/End: Original strand, 4978745 - 4978824
Alignment:
Q  44 gacattggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattacac 123  Q
    ||||||||||||| ||||||  ||||||| ||||||| |  | |||||| |||||  ||||||| |||||||||||||||    
T  4978745 gacattggttaaaaaatctattaatagaagttttgtcttgaaaatataagatgttacttttgatcaagtaatgattacac 4978824  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 123
Target Start/End: Original strand, 40574132 - 40574215
Alignment:
Q  40 ttgggacattggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattacac 123  Q
    ||||| || ||||||| |||||||||||||||||||||||| |  | |||||| ||||   |||||||| |||||| |||||||    
T  40574132 ttggggcactggttaaggaatctacaaatagaaattttgtcttggaaatataaaatgtaacttttgatagagtaataattacac 40574215  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 77
Target Start/End: Complemental strand, 4557687 - 4557659
Alignment:
Q  49 tggttaaagaatctacaaatagaaatttt 77  Q
    |||||||||||||||||||||||||||||    
T  4557687 tggttaaagaatctacaaatagaaatttt 4557659  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 123
Target Start/End: Original strand, 29526301 - 29526373
Alignment:
Q  51 gttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattacac 123  Q
    ||||||||||||| ||||| ||||||  || || | |||||| || || ||||| ||||||||||||||||||    
T  29526301 gttaaagaatctataaataaaaatttaatcttaaaaatataaaatattatttttaataaagtaatgattacac 29526373  T

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Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 5069617 - 5069538
Alignment:
Q  43 ggacattggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattaca 122  Q
    ||||| ||||||||||||||||| ||| |||||||||| | || |||||| || || |||||||||||||||||||||||    
T  5069617 ggacaatggttaaagaatctacatataaaaattttgtcttgtaaatataagatattatttttgataaagtaatgattaca 5069538  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 10226468 - 10226534
Alignment:
Q  57 gaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattacac 123  Q
    |||||||||||||||||||||||| |  | |||||| |||||  |||||||||||||||||||||||    
T  10226468 gaatctacaaatagaaattttgtcttgaaaatataagatgttaattttgataaagtaatgattacac 10226534  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 8001745 - 8001819
Alignment:
Q  49 tggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattacac 123  Q
    ||||||| ||||||| ||||||||||||| || |  | |||||| |||||  |||||||||||||||||||||||    
T  8001745 tggttaaggaatctagaaatagaaattttatcttgaaaatataagatgttacttttgataaagtaatgattacac 8001819  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 122
Target Start/End: Complemental strand, 11449175 - 11449102
Alignment:
Q  49 tggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattaca 122  Q
    ||||||||||||||||||||| ||| |||||| || | ||||||||||||  ||||||| | ||||| ||||||    
T  11449175 tggttaaagaatctacaaataaaaaatttgtcttaaaaatataatatgttaattttgatcatgtaataattaca 11449102  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 13969072 - 13969171
Alignment:
Q  24 ttgctaactactgtctttgggacattggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattacac 123  Q
    |||||||||| || | | |||||| | ||||| |||||||||||||||||||||||| |  | |||||| |||||  |||| || ||||||| |||||||    
T  13969072 ttgctaactagtgccctcgggacaatagttaaggaatctacaaatagaaattttgtcttgaaaatataaaatgttacttttaattaagtaattattacac 13969171  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 26829607 - 26829533
Alignment:
Q  49 tggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattacac 123  Q
    |||||||  ||| ||||| ||||||||||||| |  | |||||| |||||  |||||||||||||||||||||||    
T  26829607 tggttaagaaatttacaattagaaattttgtcttggaaatataagatgttacttttgataaagtaatgattacac 26829533  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 33148129 - 33148203
Alignment:
Q  49 tggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattacac 123  Q
    ||||||| |||| ||||||| ||||||||||| || | |||||| ||| |  ||||||| |||||||||||||||    
T  33148129 tggttaaggaatatacaaattgaaattttgtcttaaaaatataagatgctacttttgatcaagtaatgattacac 33148203  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 48580014 - 48579937
Alignment:
Q  46 cattggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattacac 123  Q
    |||||||| | |||||||| ||||||||||||||| || | |||||| ||||  ||||| || || ||||||||||||    
T  48580014 cattggttgaggaatctactaatagaaattttgtcttagaaatataagatgtaatttttaatcaaataatgattacac 48579937  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 44648936 - 44649010
Alignment:
Q  49 tggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattacac 123  Q
    ||||||| |||||||||||||||||||||||| |  | |||||| |||||  |||||||||||||||||||||||    
T  44648936 tggttaaggaatctacaaatagaaattttgtcttgaaaatataaaatgttacttttgataaagtaatgattacac 44649010  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 20542505 - 20542428
Alignment:
Q  46 cattggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattacac 123  Q
    |||||||||| |||||||||||||||||||| ||| |  | |||||| |||||  ||||||| |||||||||||||||    
T  20542505 cattggttaaggaatctacaaatagaaatttcgtcttggaaatataagatgttacttttgattaagtaatgattacac 20542428  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 122
Target Start/End: Complemental strand, 41727011 - 41726938
Alignment:
Q  49 tggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattaca 122  Q
    ||||||| ||||||||||||| |||||||||| |  | |||||| ||||| ||||| |||||||||||||||||    
T  41727011 tggttaaggaatctacaaataaaaattttgtcttggaaatataaaatgttattttttataaagtaatgattaca 41726938  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 18200679 - 18200753
Alignment:
Q  49 tggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattacac 123  Q
    |||||||  |||||||||||| |||||||||| || | |||||| |||||  ||||||| |||||||||||||||    
T  18200679 tggttaagaaatctacaaataaaaattttgtcttaaaaatataacatgttacttttgattaagtaatgattacac 18200753  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 42361512 - 42361582
Alignment:
Q  49 tggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgatt 119  Q
    |||||||||||||||  ||||||||||||||| |  | |||||| ||||||||||| ||||||||| ||||    
T  42361512 tggttaaagaatctattaatagaaattttgtctttgaaatataagatgttcttttttataaagtaaagatt 42361582  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 123
Target Start/End: Original strand, 17720174 - 17720250
Alignment:
Q  47 attggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattacac 123  Q
    ||||||||||||||||| |||||||||| || || |  | |||||| ||||| |||||||| | |||||||||||||    
T  17720174 attggttaaagaatctataaatagaaatattttcttgaaaatataagatgttatttttgatcatgtaatgattacac 17720250  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 25250401 - 25250345
Alignment:
Q  63 acaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgatt 119  Q
    |||||||||||||||||| |  | |||||||||||| |||||||| |||||||||||    
T  25250401 acaaatagaaattttgtcttgaaaatataatatgttatttttgatcaagtaatgatt 25250345  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 10652531 - 10652571
Alignment:
Q  52 ttaaagaatctacaaatagaaattttgtcatatagatataa 92  Q
    |||||||||||| |||||||||||||||| |||| ||||||    
T  10652531 ttaaagaatctataaatagaaattttgtcttataaatataa 10652571  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 19677113 - 19677036
Alignment:
Q  46 cattggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattacac 123  Q
    |||||||||| ||||| |||||||||||||||||| |  | |||||| |||||  ||||||| |||||||||||||||    
T  19677113 cattggttaaggaatcgacaaatagaaattttgtcttgaaaatataagatgttacttttgattaagtaatgattacac 19677036  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 8896599 - 8896670
Alignment:
Q  52 ttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattacac 123  Q
    |||||||||||||||||| |||||||||| || | |||||| |||||  ||||||| | |||||||||||||    
T  8896599 ttaaagaatctacaaatataaattttgtcttaaaaatataagatgttacttttgatcaggtaatgattacac 8896670  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 37928415 - 37928341
Alignment:
Q  49 tggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattacac 123  Q
    ||||||||||||||| ||||| ||||||| || |  | |||||| ||||| |||||||||||||||| |||||||    
T  37928415 tggttaaagaatctataaatataaattttatcttgaaaatataaaatgttatttttgataaagtaattattacac 37928341  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 309
Target Start/End: Complemental strand, 12683649 - 12683588
Alignment:
Q  251 gtattttgatgttcaaaataatgcaattaattatgttaa---acttttttatttggtcattt 309  Q
    |||||||||||||||||||||| ||||| ||| ||||||   ||||||||||| ||||||||    
T  12683649 gtattttgatgttcaaaataatacaattgattttgttaacttacttttttattcggtcattt 12683588  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 16685851 - 16685773
Alignment:
Q  46 cattggttaaagaatctacaaatagaaattttgtcatatagatataatatgtt-ctttttgataaagtaatgattacac 123  Q
    |||||||||| |||||||| ||||||| ||||||| |  | |||||| ||||| || |||||| |||||||||||||||    
T  16685851 cattggttaaggaatctactaatagaagttttgtctttgaaatataagatgttactctttgatcaagtaatgattacac 16685773  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 17660087 - 17660009
Alignment:
Q  46 cattggttaaagaatctacaaatagaaattttgtcatatagatataatatgtt-ctttttgataaagtaatgattacac 123  Q
    |||||||||| |||||||| ||||||| ||||||| |  | |||||| ||||| || |||||| |||||||||||||||    
T  17660087 cattggttaaggaatctactaatagaagttttgtctttgaaatataagatgttactctttgatcaagtaatgattacac 17660009  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 25530543 - 25530617
Alignment:
Q  49 tggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattacac 123  Q
    |||||||||||| |  ||||||||||||| || || | |||||| |||||   ||||||||||||||||||||||    
T  25530543 tggttaaagaatttttaaatagaaattttatcttagaaatataaaatgttacatttgataaagtaatgattacac 25530617  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 1554017 - 1554081
Alignment:
Q  49 tggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagta 113  Q
    ||||||||||||||||||||| |||| ||||| || | |||||| |||||  ||| |||||||||    
T  1554017 tggttaaagaatctacaaataaaaatgttgtcttagaaatataagatgttactttagataaagta 1554081  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 4020220 - 4020139
Alignment:
Q  42 gggacattggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattacac 123  Q
    |||||| ||||||| |||||||||||||||||||||||| |  | |||||| |||||  ||||||| ||||||| |||||||    
T  4020220 gggacaatggttaaggaatctacaaatagaaattttgtcttgaaaatataaaatgttaattttgattaagtaattattacac 4020139  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 48338930 - 48338854
Alignment:
Q  47 attggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattacac 123  Q
    |||||||||||||| || ||||||||||||| || |  | |||||| ||||| |||||||||||||||| |||||||    
T  48338930 attggttaaagaatttataaatagaaattttatcttggaaatataagatgttatttttgataaagtaattattacac 48338854  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 29032532 - 29032453
Alignment:
Q  44 gacattggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattacac 123  Q
    |||||| ||||| || |||||||| |||||||||||| || | |||||| |||||  ||||||| |||||||||||||||    
T  29032532 gacattagttaaggattctacaaacagaaattttgtcttaaaaatataagatgttacttttgatcaagtaatgattacac 29032453  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 49261920 - 49261821
Alignment:
Q  24 ttgctaactactgtctttgggacattggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattacac 123  Q
    |||||||| | |||| ||||| || |||||||  ||| ||||||||||||||||||| | || |||||| |||||  |||||||| |||||| |||||||    
T  49261920 ttgctaaccattgtccttggggcactggttaagaaatatacaaatagaaattttgtcttgtaaatataagatgttacttttgatagagtaataattacac 49261821  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 44698333 - 44698259
Alignment:
Q  49 tggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattacac 123  Q
    |||||||  ||||||||||||||||||||||| |  | |||||| |||||  |||||||||| ||||||||||||    
T  44698333 tggttaagaaatctacaaatagaaattttgtcttgaaaatataagatgttacttttgataaaataatgattacac 44698259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 55446843 - 55446773
Alignment:
Q  53 taaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattacac 123  Q
    ||||||||||||||||| |||||||||| |  | |||||| |||||  |||| ||||||||||||||||||    
T  55446843 taaagaatctacaaataaaaattttgtcttggaaatataagatgttacttttaataaagtaatgattacac 55446773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 8326252 - 8326175
Alignment:
Q  49 tggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattacaccac 126  Q
    |||||||  ||||| ||||||||||||||||  || | ||||||||||||  ||||||| ||| ||||||||||||||    
T  8326252 tggttaataaatcttcaaatagaaattttgttttaaaaatataatatgttacttttgatcaagcaatgattacaccac 8326175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 50959001 - 50958901
Alignment:
Q  23 attgctaactactgtctttgggacattggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattaca 122  Q
    ||||||||| | |||| || || || || ||||||||| | ||||||||||||||||| |  | |||||| ||||| |||||||| ||| ||||||||||    
T  50959001 attgctaaccagtgtccttagggcaatgattaaagaattttcaaatagaaattttgtcttggaaatataacatgttatttttgatcaagaaatgattaca 50958902  T
Q  123 c 123  Q
    |    
T  50958901 c 50958901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 123
Target Start/End: Original strand, 635698 - 635777
Alignment:
Q  44 gacattggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattacac 123  Q
    |||| ||||||| |||||||||||||||||||||||| |  | | |||| |||||  ||||||| || ||||||||||||    
T  635698 gacaatggttaaggaatctacaaatagaaattttgtcttgaataaataagatgttacttttgattaaataatgattacac 635777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 6785792 - 6785866
Alignment:
Q  49 tggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattacac 123  Q
    ||||||| || ||||||||||||| ||||||| |  | |||||| |||||  ||||||| |||||||||||||||    
T  6785792 tggttaaggattctacaaatagaatttttgtcttgaaaatataaaatgttacttttgatcaagtaatgattacac 6785866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 121
Target Start/End: Complemental strand, 38359184 - 38359090
Alignment:
Q  27 ctaactactgtctttgggacattggttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattac 121  Q
    ||||||| |||| || || || ||||||| ||||||| ||||| ||||||| || || | |||||| |||||  |||||||||||||| ||||||    
T  38359184 ctaactagtgtccttagggcaatggttaaggaatctataaataaaaattttatcttagaaatataagatgttaattttgataaagtaacgattac 38359090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 48338836 - 48338779
Alignment:
Q  144 ttacttgttttggatgcttaactaattcccctagagaactctttagcattctccttat 201  Q
    |||||||||||||||||||||| | | ||| ||||| |||  ||||||||||||||||    
T  48338836 ttacttgttttggatgcttaaccattgcccttagagcactagttagcattctccttat 48338779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 121
Target Start/End: Original strand, 22611904 - 22611967
Alignment:
Q  58 aatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattac 121  Q
    |||||||||||| |||||||||| || | |||||| |||||  ||| |||||||||||||||||    
T  22611904 aatctacaaatataaattttgtcttaaaaatataagatgttactttcgataaagtaatgattac 22611967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 37183137 - 37183079
Alignment:
Q  65 aaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgattacac 123  Q
    ||||| |||| || || |||| |||||||||||| |||||||| |||||||||||||||    
T  37183137 aaataaaaatcttatcttataaatataatatgttatttttgatcaagtaatgattacac 37183079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 13967958 - 13967889
Alignment:
Q  51 gttaaagaatctacaaatagaaattttgtcatatagatataatatgttctttttgataaagtaatgatta 120  Q
    ||||| |||||||||||||||||||||||| |    |||||| ||||| ||||| || ||||||||||||    
T  13967958 gttaaggaatctacaaatagaaattttgtcttggtaatataagatgttattttttatcaagtaatgatta 13967889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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