View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17241_low_31 (Length: 326)
Name: NF17241_low_31
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17241_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 9 - 307
Target Start/End: Complemental strand, 38629311 - 38629013
Alignment:
| Q |
9 |
gattattcttcaacctcttatagtacatgttgtccaaatcattaggcgtgctaccatcaagcaccacagttgggtttatgctctgtgactgtggtggtgg |
108 |
Q |
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| T |
38629311 |
gattattcttcaacctcttatagtacatgttgtccaaatcattaggcgtgctaccatcaagcaccacagttgggtttatgctctgtgactgtggtggtgg |
38629212 |
T |
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| Q |
109 |
acacttagattttaacaacctagcaaagttagggtccatagaacgatcttgaggaaaagttgaattgaaagagtataatcggtttgagaaagaaggacaa |
208 |
Q |
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| T |
38629211 |
acacttagattttaacaacctagcaaagttagggtccatagaaggatcttgaggaaaagttaaattgaaagagtataatcgttttgagaatgaagaacaa |
38629112 |
T |
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| Q |
209 |
cgtgagacaccaatagaatgagctccagaaagtgtaaccatttcatcagctgacaaaccttttctgtcaaaattatcgataagttgctctgcattgaaa |
307 |
Q |
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| T |
38629111 |
tgtgagacaccaatagaatgagcaccagaaagtgtaaccatttcatctactgacaaaccttttctatcaaaattatcgataagttgctccgcactgaaa |
38629013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 92 - 307
Target Start/End: Original strand, 38697053 - 38697268
Alignment:
| Q |
92 |
tgtgactgtggtggtggacacttagattttaacaacctagcaaagttagggtccatagaacgatcttgaggaaaagttgaattgaaagagtataatcggt |
191 |
Q |
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| T |
38697053 |
tgtgactgtggtggcggacacttggatctcaacaacctagcaaagtcagggtccatagaaggatcttgaggaaaagttgcattgaaagagtataatcgtt |
38697152 |
T |
|
| Q |
192 |
ttgagaaagaaggacaacgtgagacaccaatagaatgagctccagaaagtgtaaccatttcatcagctgacaaaccttttctgtcaaaattatcgataag |
291 |
Q |
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| T |
38697153 |
ttgagaatgaagaacaatgtgagacaccaatagaatgagcaccagaaagtgtaaccatttcatctactgacaaaccttttctatcaaaattatcgataag |
38697252 |
T |
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| Q |
292 |
ttgctctgcattgaaa |
307 |
Q |
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|||||| ||| ||||| |
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| T |
38697253 |
ttgctccgcactgaaa |
38697268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 38696951 - 38697008
Alignment:
| Q |
11 |
ttattcttcaacctcttatagtacatgttgtccaaatcattaggcgtgctaccatcaa |
68 |
Q |
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| T |
38696951 |
ttattcttcaacctcttatagtacatgttgtccaaatcattaggcgtggaaccatcaa |
38697008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 14257616 - 14257539
Alignment:
| Q |
194 |
gagaaagaaggacaacgtgagacaccaatagaatgagctccagaaagtgtaaccatttcatcagctgacaaacctttt |
271 |
Q |
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| T |
14257616 |
gagaaagaagaacaatgtgatacaccaattgaatgtgctcctgagagtgtaaccatttcatcaattgacaaacctttt |
14257539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 20516639 - 20516595
Alignment:
| Q |
14 |
ttcttcaacctcttatagtacatgttgtccaaatcattaggcgtg |
58 |
Q |
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| T |
20516639 |
ttcttcaacctcttatagtacatgttgtccaaatcaataggcgtg |
20516595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 253
Target Start/End: Original strand, 30651991 - 30652088
Alignment:
| Q |
153 |
gatcttgaggaaaagttgaattgaaagagtataatcggtttgagaaagaaggacaacgtgagacaccaatagaatgagctccagaaagtgtaaccatttc |
252 |
Q |
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| T |
30651991 |
gatcttgagaaaaggtttcaatgaaagagtataaccaatttgagaaagaa---caatgcgagactccaatagaacgagctccggaaagtgtaaccatttc |
30652087 |
T |
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