View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17241_low_37 (Length: 310)
Name: NF17241_low_37
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17241_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 32309142 - 32308893
Alignment:
| Q |
1 |
gaatacaatgaatgcaactatgatccataggtcgaagatgaagaatctcctcattttcttgatgatgaagatgaagagaaagagaagacttgtttaggaa |
100 |
Q |
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| T |
32309142 |
gaatacaatgaatgcaactatgatccatgggttgaagatgaagaatctcctcattttcttgatgatgaagatgaagagaaagagaagacttgtttaggaa |
32309043 |
T |
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| Q |
101 |
gttattgagttggttggaattgtaactgaatatgaatggttagttagcatattgattgatactctttttatataggaaaggaactagctaggaatggact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32309042 |
gttattgagttggttggaattgtaactgaatatgaatggttagttagcatattgattgatactctttttatataggaaaggaactagctaggaatggact |
32308943 |
T |
|
| Q |
201 |
cactagggtatccttgtatttgagattaatcttcttaaggggtaagtaat |
250 |
Q |
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| T |
32308942 |
cactagggcatccttgtatttgagattaatcttcttaacgggcaagtaat |
32308893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 32799924 - 32800142
Alignment:
| Q |
1 |
gaatacaatgaatgcaactatgatccataggtcgaagatgaagaatctcctcattttcttgatgatgaagatgaagagaaagagaagacttgtttaggaa |
100 |
Q |
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||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32799924 |
gaatacaatgaatgcaactatgaaccatgggttgaagatgaagaatctcctcattttcttgatgatgaagatgaagagaaagagaagacttgtttaggaa |
32800023 |
T |
|
| Q |
101 |
gttattgagttggttggaattgtaactgaatatgaatggttagttagcatattgattgatactctttttatataggaaaggaactagctaggaatggact |
200 |
Q |
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| T |
32800024 |
gttattgagttggttggaattgtaactgaatatgaatggttagttagcatattgattgatactctttttatataggaaaggaactagctaggaatggact |
32800123 |
T |
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| Q |
201 |
cactagggtatccttgtat |
219 |
Q |
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| T |
32800124 |
cattagggtatccttgtat |
32800142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 32565693 - 32565887
Alignment:
| Q |
1 |
gaatacaatgaatgcaactatgatccataggtcgaagatgaagaatctcctcattttcttgatgatgaagatgaa--------gagaaagagaagacttg |
92 |
Q |
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|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||| |
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| T |
32565693 |
gaatacaatgaatgcaactatgatccatgggttgaagatgaagaatctcctcattttcttgatgatgaagaagaacaagagaagaaaaagagaagacttg |
32565792 |
T |
|
| Q |
93 |
tttaggaagttattgagttggttggaattgtaactgaatatgaatggttagttagcatattgattgatactctttttatataggaaaggaactag |
187 |
Q |
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| T |
32565793 |
tttaggaagttattgagttggttggaattgtaactgaatctgaatggtttgttagcatattgattgatactttttttatataggaaaggaactag |
32565887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 32815315 - 32815593
Alignment:
| Q |
1 |
gaatacaatgaatgcaactatgatccataggtcgaagatgaagaatctcctcattttcttgatgatgaagatgaa--------gagaaagagaagacttg |
92 |
Q |
| |
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|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||| |
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| T |
32815315 |
gaatacaatgaatgcaactatgatccatgggttgaagatgaagaatctcctcattttcttgatgatgaagaagaacaagagaagaaaaagagaagacttg |
32815414 |
T |
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| Q |
93 |
tttaggaagttattgagttggttggaattgtaactgaatatgaatggtt----agttagcatattgattgatactctttttatataggaaaggaactagc |
188 |
Q |
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| T |
32815415 |
tttaggaagttattgggttggttggaattgtaactgaatctgaatggttggttagttagcatattaat----actctctttatataggaaaggaactagg |
32815510 |
T |
|
| Q |
189 |
---taggaatggactcactagggtatccttgtat---------ttgagattaatcttcttaaggggtaagtaattcctcttct |
259 |
Q |
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| T |
32815511 |
aaataggaatggactcactagggtatccttgtatctagtaatcatgagattaatcttcttaaggggtaagtaattcttcttct |
32815593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 32806878 - 32807097
Alignment:
| Q |
1 |
gaatacaatgaatgcaactatgatccataggtcgaagatgaagaatctcctcattttcttgatgatgaaga--------tgaagagaaagagaagacttg |
92 |
Q |
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|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
32806878 |
gaatacaatgaatgcaactatgatccatgggttgaagatgaagaatctcctcattttcttgatgatgaagaagaacaagagaagaaaaagagaagacttg |
32806977 |
T |
|
| Q |
93 |
tttaggaagttattgagttggttggaat----tgtaactgaatatgaatggttagttagcatattgattgatactctttttatataggaaaggaactagc |
188 |
Q |
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|||||||||||||||||||||||||||| || |||||||| | |||||||||||||| ||||||||||||||||||||||||| ||| | |
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| T |
32806978 |
tttaggaagttattgagttggttggaattgcatgcaactgaat-ggtttggttagttagcat----attgatactctttttatataggaaatgaa----c |
32807068 |
T |
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| Q |
189 |
taggaatggactcactagggtatccttgt |
217 |
Q |
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||||||| ||||||||||||||||||||| |
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| T |
32807069 |
taggaattgactcactagggtatccttgt |
32807097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 73 - 178
Target Start/End: Complemental strand, 32305351 - 32305256
Alignment:
| Q |
73 |
gaagagaaagagaagacttgtttaggaagttattgagttggttggaattgtaactgaatatgaatggttagttagcatattgattgatactctttttata |
172 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||| |||| ||||||||||||| |
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| T |
32305351 |
gaagagaaagagaagacttgtttaggaagttattgggtttgttggaattgtaact------gaatggttagttagcat----attgctactctttttata |
32305262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 28215882 - 28215949
Alignment:
| Q |
6 |
caatgaatgcaactatgatccataggtcgaagatgaagaatctcctcattttcttgatgatgaagatg |
73 |
Q |
| |
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||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||| |||| |
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| T |
28215882 |
caatgaatgcaactaagatccatgtgttgaagatgaagaatctcctcattttcttgatgatgatgatg |
28215949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 28220226 - 28220194
Alignment:
| Q |
34 |
gaagatgaagaatctcctcattttcttgatgat |
66 |
Q |
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||||||||||| ||||||||||||||||||||| |
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| T |
28220226 |
gaagatgaagattctcctcattttcttgatgat |
28220194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 301293 - 301166
Alignment:
| Q |
4 |
tacaatgaatgcaactatgatccataggtcgaagatgaagaatctcctcattttcttgatgatgaagatgaagagaaagagaagacttgtttaggaagtt |
103 |
Q |
| |
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|||||||||||||||||||| |||| ||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
301293 |
tacaatgaatgcaactatgaaccatgggttgaagatgaagaatcttctcattttcttgatgatgaagaagaagagaaagagaagacttgtttaggaagtt |
301194 |
T |
|
| Q |
104 |
attgagttggttggaattgtaactgaat |
131 |
Q |
| |
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|||| ||| ||||||||||||||||||| |
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| T |
301193 |
attgggtttgttggaattgtaactgaat |
301166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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