View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17241_low_38 (Length: 299)

Name: NF17241_low_38
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17241_low_38
NF17241_low_38
[»] chr5 (8 HSPs)
chr5 (41-288)||(42897374-42897621)
chr5 (41-288)||(36982239-36982486)
chr5 (41-290)||(14044107-14044355)
chr5 (41-288)||(2970666-2970911)
chr5 (41-206)||(36767876-36768039)
chr5 (55-207)||(33404365-33404515)
chr5 (41-157)||(5712600-5712716)
chr5 (234-288)||(33403247-33403301)
[»] chr3 (16 HSPs)
chr3 (41-288)||(40496826-40497073)
chr3 (41-288)||(41346100-41346347)
chr3 (41-288)||(51545715-51545962)
chr3 (41-290)||(48169775-48170024)
chr3 (41-288)||(54014290-54014537)
chr3 (36-288)||(50676528-50676778)
chr3 (69-288)||(24709063-24709282)
chr3 (43-290)||(48737577-48737824)
chr3 (41-206)||(13542792-13542957)
chr3 (202-288)||(12568169-12568255)
chr3 (202-288)||(13544633-13544719)
chr3 (57-210)||(30462801-30462952)
chr3 (39-74)||(48169722-48169757)
chr3 (234-288)||(30459859-30459913)
chr3 (41-74)||(12568275-12568308)
chr3 (41-74)||(13544739-13544772)
[»] chr2 (21 HSPs)
chr2 (38-288)||(29194041-29194291)
chr2 (41-288)||(2110273-2110520)
chr2 (41-288)||(43370727-43370974)
chr2 (41-288)||(28585683-28585930)
chr2 (41-288)||(45080420-45080665)
chr2 (41-287)||(8381316-8381562)
chr2 (58-288)||(4828106-4828336)
chr2 (42-278)||(1779073-1779309)
chr2 (72-229)||(9370486-9370643)
chr2 (72-290)||(42846942-42847156)
chr2 (75-258)||(43377242-43377423)
chr2 (37-210)||(31921617-31921788)
chr2 (149-288)||(39646437-39646573)
chr2 (41-145)||(30422588-30422692)
chr2 (76-202)||(16970295-16970419)
chr2 (36-156)||(25898766-25898885)
chr2 (64-161)||(39646327-39646426)
chr2 (212-288)||(16964869-16964945)
chr2 (69-120)||(27922606-27922657)
chr2 (234-288)||(31922032-31922086)
chr2 (34-74)||(43370667-43370707)
[»] scaffold0519 (1 HSPs)
scaffold0519 (41-288)||(10593-10840)
[»] chr8 (13 HSPs)
chr8 (41-288)||(11254553-11254800)
chr8 (41-288)||(17493579-17493826)
chr8 (41-288)||(18575081-18575328)
chr8 (41-288)||(27820826-27821073)
chr8 (41-288)||(39906963-39907208)
chr8 (44-288)||(38069898-38070142)
chr8 (41-290)||(12738366-12738615)
chr8 (64-290)||(17335994-17336219)
chr8 (41-290)||(9753821-9754069)
chr8 (36-288)||(13243543-13243793)
chr8 (41-210)||(11147782-11147949)
chr8 (75-121)||(5878176-5878222)
chr8 (75-120)||(29638412-29638457)
[»] chr4 (23 HSPs)
chr4 (41-288)||(39788046-39788293)
chr4 (41-288)||(40071449-40071696)
chr4 (41-288)||(37064753-37065000)
chr4 (41-288)||(54438157-54438404)
chr4 (41-288)||(925136-925383)
chr4 (41-288)||(17493806-17494053)
chr4 (41-290)||(20789724-20789972)
chr4 (41-288)||(47199539-47199786)
chr4 (44-290)||(33800786-33801031)
chr4 (41-290)||(34408657-34408906)
chr4 (41-290)||(21240377-21240626)
chr4 (72-290)||(32217968-32218186)
chr4 (72-281)||(52101108-52101317)
chr4 (89-288)||(53509690-53509889)
chr4 (78-280)||(28910195-28910395)
chr4 (72-288)||(3172051-3172266)
chr4 (72-288)||(46870660-46870874)
chr4 (36-181)||(51744514-51744659)
chr4 (76-288)||(41555515-41555720)
chr4 (214-288)||(51744657-51744731)
chr4 (41-157)||(10441517-10441631)
chr4 (42-210)||(28689666-28689829)
chr4 (72-112)||(35029154-35029194)
[»] chr7 (17 HSPs)
chr7 (41-288)||(4041000-4041247)
chr7 (41-288)||(6392324-6392571)
chr7 (41-288)||(40232115-40232362)
chr7 (58-288)||(29737458-29737688)
chr7 (41-288)||(27596086-27596332)
chr7 (49-288)||(31689361-31689600)
chr7 (41-288)||(25943649-25943892)
chr7 (41-288)||(41427648-41427895)
chr7 (58-288)||(24300171-24300391)
chr7 (89-288)||(38276593-38276792)
chr7 (75-288)||(21442834-21443045)
chr7 (103-288)||(48838113-48838296)
chr7 (41-210)||(22338101-22338268)
chr7 (50-210)||(22619883-22620041)
chr7 (39-102)||(7380533-7380596)
chr7 (41-74)||(4040947-4040980)
chr7 (36-76)||(42834518-42834558)
[»] chr1 (14 HSPs)
chr1 (39-290)||(50777048-50777299)
chr1 (41-288)||(46862609-46862856)
chr1 (41-288)||(28036700-28036948)
chr1 (41-288)||(1929217-1929463)
chr1 (41-288)||(32045886-32046133)
chr1 (44-288)||(39150900-39151144)
chr1 (76-288)||(38321698-38321910)
chr1 (35-288)||(8229116-8229370)
chr1 (45-288)||(46370980-46371217)
chr1 (41-290)||(1207452-1207699)
chr1 (41-288)||(40562436-40562681)
chr1 (41-290)||(9129401-9129651)
chr1 (128-290)||(38817825-38817984)
chr1 (72-120)||(9590625-9590673)
[»] chr6 (14 HSPs)
chr6 (41-288)||(28541587-28541834)
chr6 (56-288)||(29182644-29182876)
chr6 (41-288)||(12350325-12350572)
chr6 (41-288)||(16435832-16436075)
chr6 (41-288)||(30736472-30736719)
chr6 (41-288)||(1241162-1241408)
chr6 (72-290)||(7271109-7271327)
chr6 (43-288)||(13042025-13042268)
chr6 (41-288)||(31013495-31013742)
chr6 (93-288)||(1870587-1870780)
chr6 (64-288)||(13210397-13210618)
chr6 (72-206)||(31833622-31833751)
chr6 (223-287)||(31833747-31833811)
chr6 (41-74)||(28541854-28541887)
[»] scaffold0061 (1 HSPs)
scaffold0061 (41-288)||(10017-10264)
[»] scaffold0047 (2 HSPs)
scaffold0047 (41-288)||(69806-70053)
scaffold0047 (41-74)||(69753-69786)
[»] scaffold0532 (1 HSPs)
scaffold0532 (41-290)||(3865-4114)
[»] scaffold0318 (1 HSPs)
scaffold0318 (39-288)||(16410-16646)
[»] scaffold0016 (1 HSPs)
scaffold0016 (41-220)||(92169-92348)
[»] scaffold1194 (1 HSPs)
scaffold1194 (41-288)||(1032-1267)


Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 41 - 288
Target Start/End: Original strand, 42897374 - 42897621
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42897374 tactccctccgtccctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 42897473  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42897474 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 42897573  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42897574 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 42897621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 41 - 288
Target Start/End: Complemental strand, 36982486 - 36982239
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  36982486 tactccctccgtccctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaaaagagtgatacttttactgagttg 36982387  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36982386 cccttgtcattattttgaaactttttcacttttaagtaatgattattttatttgttccactacaaactttaacatggggaccacaaaaagtatttataag 36982287  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    |||||||||||||||||||||  ||||||| |||||||||||||||||    
T  36982286 gggtaaatctgtcaaattttgcctagaaatatgagaaggtcaagtatt 36982239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 41 - 290
Target Start/End: Complemental strand, 14044355 - 14044107
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| ||||||||||||| ||||||| |||||||||   ||||||||||||||||||||||||||||||||| |||||||| ||| |||||    
T  14044355 tactccctccgtccctgaataagtgacctatttgatcatttcacacgtattaagaaaagtgtaaagatgaaagaaagagagtgatacttt-actaagttg 14044257  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14044256 cccttgtcattattttgaaactttttcacttttaaataatgattactttatttgttccactacaaactttaacatggggaccacaaaaagtatttataag 14044157  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattat 290  Q
     |||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  14044156 aggtaaatctgtcaaattttgcttagaaatctgagaaggtcaaatattat 14044107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 41 - 288
Target Start/End: Original strand, 2970666 - 2970911
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||| ||| || ||||  |||| || |||||||||||||| | |||||||||| ||||||||||||||||||| |  |||| ||| ||||| |||    
T  2970666 tactccctctgtccctcaatatttgacctacttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagataatgatattttcactgaattg 2970765  T
Q  141 cccttgtca-ttattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataa 239  Q
    ||||||| | |||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||| |||| | || |||||||||||||||||     
T  2970766 cccttgttaattattttgaaacctt--cacttttaagtaatgattactttctttgttccactacaaacttt-acattgagaccacaaaaagtatttatac 2970862  T
Q  240 ggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||| ||||||||| || |||||||| |||||| ||||||||||    
T  2970863 ggggtaaatttgtcaaattctgcttagaaatttgagaatgtcaagtatt 2970911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 41 - 206
Target Start/End: Original strand, 36767876 - 36768039
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    |||||| ||| || ||||||||||||| |||||||||| |||||| | ||||| || |||||||||||||||||||||||| |||| ||||||||| |||    
T  36767876 tactccgtccctccctgaataagtgacctatttgaccacttcacacagattaaaaagagtgtaaagatgaaagaaagagagtgatatttttactgaattg 36767975  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaa 206  Q
    ||||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||    
T  36767976 cccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaa 36768039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 55 - 207
Target Start/End: Complemental strand, 33404515 - 33404365
Alignment:
Q  55 ctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattatt 154  Q
    ||||||||||||| || |||| ||||| ||| | |||||||||| |||||||||||||||||||||| |||| ||||||||| |||||||| | ||||||    
T  33404515 ctgaataagtgacctacttgatcattttacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgcccttattattatt 33404416  T
Q  155 ttgaaactttttcacttttaagtaatgattactttctttgttccactacaaac 207  Q
    || |||| |||  |||||||| |||| ||||||||  ||||||||||||||||    
T  33404415 tttaaaccttt--acttttaaataataattactttaattgttccactacaaac 33404365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 41 - 157
Target Start/End: Complemental strand, 5712716 - 5712600
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| |||||||| |||| || ||||||||| |||| | |||||||||| ||||||||||||||||||| || |||| |||| |||| |||    
T  5712716 tactccctccgtccctgaataaatgacctacttgaccattccacacagattaagaaaaatgtaaagatgaaagaaagaaagtgatattttttctgaattg 5712617  T
Q  141 cccttgtcattattttg 157  Q
    ||||| | |||||||||    
T  5712616 cccttattattattttg 5712600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 288
Target Start/End: Complemental strand, 33403301 - 33403247
Alignment:
Q  234 ttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||||  |||||||||||| ||  |||| |||||||||||||||||    
T  33403301 ttataaggggtaaaattgtcaaattttgctttaaaatttgagaaggtcaagtatt 33403247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 41 - 288
Target Start/End: Complemental strand, 40497073 - 40496826
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || |||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40497073 tactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 40496974  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  40496973 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 40496874  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40496873 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 40496826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 41 - 288
Target Start/End: Complemental strand, 41346347 - 41346100
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| |||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||  || ||||||||||||||||||    
T  41346347 tactccctccgtccctgaataagtgacatatttgactatttcacacagattaagaaaagtgtaaagatgaaagaaagtaagtgatacttttactgagttg 41346248  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41346247 cccttgtcattattttaaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 41346148  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  41346147 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 41346100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 41 - 288
Target Start/End: Complemental strand, 51545962 - 51545715
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||| ||||||| ||||||||||||| ||||||| ||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  51545962 tactctctccgtccctgaataagtgacctatttgatcatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 51545863  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  51545862 cccttgtcattattttgaaactttttcacttttaagtaatgattactttttttgttccactacaaactttaacatggggaccacaaaaagtatttataag 51545763  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  51545762 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 51545715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 41 - 290
Target Start/End: Complemental strand, 48170024 - 48169775
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || |||||||||| ||||||||||||||||| | |||||||||||||||||||| |||||||||||| |||||| |||||||| ||    
T  48170024 tactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatactattactgagctg 48169925  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  48169924 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 48169825  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattat 290  Q
    || |||||||||||||||||| ||||||||||||||||||||||||||||    
T  48169824 ggataaatctgtcaaattttgcttagaaatctgagaaggtcaagtattat 48169775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 41 - 288
Target Start/End: Complemental strand, 54014537 - 54014290
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||| ||| || ||||||| || ||||||||||||||||| | |||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  54014537 tactccctctgtcccttaataagtaacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttactgagttg 54014438  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  54014437 cccttatcattattttgaaactttttcacttttaagtaataattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 54014338  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  54014337 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 54014290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 36 - 288
Target Start/End: Complemental strand, 50676778 - 50676528
Alignment:
Q  36 attactactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactg 135  Q
    |||| ||||||||||||| || |||||||||| ||||||||||||||||| | |||||||||||||||||||| |||||||||||| |||| ||||||||    
T  50676778 attagtactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatatttttactg 50676679  T
Q  136 agttgcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtattt 235  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  50676678 agttgcc-ttgtcattattttaaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacat-gggaccacaaaaagtattt 50676581  T
Q  236 ataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  50676580 ataaggggtaaatctgtcaaattttgcttaaaaatctgagaaggtcaagtatt 50676528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 69 - 288
Target Start/End: Complemental strand, 24709282 - 24709063
Alignment:
Q  69 tatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttca 168  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  24709282 tatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttgtcattattttgaaattttttca 24709183  T
Q  169 cttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaa 268  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||| || |||||||||||||||||| ||| ||    
T  24709182 cttttaagtaatgattactttctttgtttcactacaaactttaacatgaggaccacaaaaagtatttataaaggataaatctgtcaaattttgcttataa 24709083  T
Q  269 atctgagaaggtcaagtatt 288  Q
    ||||||||||||||||||||    
T  24709082 atctgagaaggtcaagtatt 24709063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 43 - 290
Target Start/End: Complemental strand, 48737824 - 48737577
Alignment:
Q  43 ctccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcc 142  Q
    |||||||||||  | ||||  |||| || ||||| |||||||| | ||||||||||||||| |||||||||||||| |  |||| ||||||||| |||||    
T  48737824 ctccctccgtccttcaatacttgacctacttgacaatttcacacagattaagaaaagtgtagagatgaaagaaagaaaatgatatttttactgaattgcc 48737725  T
Q  143 cttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggg 242  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  48737724 cttgtcattattttgaaactttttcacttttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttataaagg 48737625  T
Q  243 gtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattat 290  Q
    |||||| ||||||||| || ||| |||||||| ||| |||||||||||    
T  48737624 gtaaatttgtcaaattctgcttaaaaatctgaaaagatcaagtattat 48737577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 41 - 206
Target Start/End: Original strand, 13542792 - 13542957
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    |||||| |||||| ||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  13542792 tactccatccgtccctgaataagtgacctatttgaccatttcatatagattaagaaaagtgtaaagatgaaagaaagagattgatacttttactgagttg 13542891  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaa 206  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||    
T  13542892 cccttgtcattattttaaaactttttcacttttaagtaatgattactttctttgtttcgctacaaa 13542957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 202 - 288
Target Start/End: Original strand, 12568169 - 12568255
Alignment:
Q  202 acaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  12568169 acaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaagtcaagtatt 12568255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 202 - 288
Target Start/End: Original strand, 13544633 - 13544719
Alignment:
Q  202 acaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  13544633 acaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaagtcaagtatt 13544719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 57 - 210
Target Start/End: Complemental strand, 30462952 - 30462801
Alignment:
Q  57 gaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattatttt 156  Q
    ||||||||||  || |||||||||||||| | |||||||||||| ||||||||||||||| |||| |||| ||||||||| |||||||| | ||||||||    
T  30462952 gaataagtgatctacttgaccatttcacacagattaagaaaagtataaagatgaaagaaatagagtgatatttttactgaattgcccttattattatttt 30462853  T
Q  157 gaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 210  Q
     ||||   ||||||||||| |||| ||||||||  |||||||||||||||||||    
T  30462852 taaac--cttcacttttaaataataattactttaattgttccactacaaacttt 30462801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 48169722 - 48169757
Alignment:
Q  39 actactccctccgtctctgaataagtgacatatttg 74  Q
    ||||||||||||||||||||||||||||| ||||||    
T  48169722 actactccctccgtctctgaataagtgacctatttg 48169757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 288
Target Start/End: Complemental strand, 30459913 - 30459859
Alignment:
Q  234 ttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||||  |||||||||||| ||  |||| |||||||||||||||||    
T  30459913 ttataaggggtaaaattgtcaaattttgctttaaaatttgagaaggtcaagtatt 30459859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 12568308 - 12568275
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttg 74  Q
    ||||||||||||| ||||||||||||||||||||    
T  12568308 tactccctccgtccctgaataagtgacatatttg 12568275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 13544772 - 13544739
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttg 74  Q
    ||||||||||||| ||||||||||||||||||||    
T  13544772 tactccctccgtccctgaataagtgacatatttg 13544739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 38 - 288
Target Start/End: Complemental strand, 29194291 - 29194041
Alignment:
Q  38 tactactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgag 137  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29194291 tactactccctccgtccctgaataagtgacctatttgaccatttcacacaaattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgag 29194192  T
Q  138 ttgcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttat 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  29194191 ttgcccttgtcattattttgaaactttttcacttttaagtaatgattattttctttgttccactacaaactttaacatcgggaccacaaaaagtatttat 29194092  T
Q  238 aaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29194091 aaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 29194041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 41 - 288
Target Start/End: Complemental strand, 2110520 - 2110273
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    |||||| |||||| ||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2110520 tactccttccgtccctgaataagtgacatatttgatcatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 2110421  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2110420 cccttgtcattattttgaaactttttcacttttaagtaatgattactttttttgttccactacaaactttaacatggggaccacaaaaagtatttataag 2110321  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||    
T  2110320 gggtaaatctgtcaaattttgcttagaaatctgataaggtcaagtatt 2110273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 41 - 288
Target Start/End: Complemental strand, 43370974 - 43370727
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || |||||||||| ||||||||||||||||| | ||||||||||||||||| || |||||||||||| ||||||||||||||||||    
T  43370974 tactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaaaataaaagaaagagagtgatacttttactgagttg 43370875  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  43370874 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 43370775  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||    
T  43370774 gggtaaatctgtcaaattttgcttagaaatctaagaaggtcaagtatt 43370727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 41 - 288
Target Start/End: Original strand, 28585683 - 28585930
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    |||||| |||||| || |||||||||| ||||||||||||||||| | |||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  28585683 tactccatccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttactgagttg 28585782  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  28585783 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataaa 28585882  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||    
T  28585883 gggtaaatctgtcaaattttgcttagaaatctgagaaggttaagtatt 28585930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 41 - 288
Target Start/End: Original strand, 45080420 - 45080665
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||| |  |||||||||||||||||    
T  45080420 tactccctccgtccctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagtg--atacttttactgagttg 45080517  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45080518 cccttatcattatgttgaaactttttcacttttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 45080617  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45080618 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 45080665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 41 - 287
Target Start/End: Original strand, 8381316 - 8381562
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| ||||||||||||  ||||||||||||||||| | |||||||||| ||||||||||||||||| |||| ||||||||||||||||||    
T  8381316 tactccctccgtccctgaataagtgatctatttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaatagagtgatacttttactgagttg 8381415  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||  || |||||||||||||||||||    
T  8381416 cccttgtcattattttgaaactttttcatttttaagtaatgattactttctttgttccactacaaattttaacatgaagaccacaaaaagtatttataag 8381515  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtat 287  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||    
T  8381516 gggtaaatctgtcaaattttatttagaaatttgagaaggtcaagtat 8381562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 58 - 288
Target Start/End: Original strand, 4828106 - 4828336
Alignment:
Q  58 aataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttg 157  Q
    |||||||||| ||||||||||||||||| | |||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||    
T  4828106 aataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaaaagagtgatacttttactgagttgcccttgtcattattttg 4828205  T
Q  158 aaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaat 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  4828206 aaactttttcacttttaagtaatgattactttctttgttccactataaactttaacatggggaccacaaaaagtatttataaggggtaaatttgtcaaat 4828305  T
Q  258 tttgtttagaaatctgagaaggtcaagtatt 288  Q
    |||| |||||||| |||||||||||| ||||    
T  4828306 tttgcttagaaatttgagaaggtcaaatatt 4828336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 42 - 278
Target Start/End: Original strand, 1779073 - 1779309
Alignment:
Q  42 actccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgc 141  Q
    ||||| |||||| || ||||  |||| || |||||||||||||||| |||||||||||||||||||||||||||||| |  |||| ||||||||| |||     
T  1779073 actccttccgtccctcaatacttgacttacttgaccatttcacatagattaagaaaagtgtaaagatgaaagaaagataatgatatttttactgaattgt 1779172  T
Q  142 ccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataagg 241  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |    
T  1779173 ctttgtcattattttgaaactttttcacttttaagtaatgattactttctttattccactacaaactttaacatggggaccacaaaaagtatttataaag 1779272  T
Q  242 ggtaaatctgtcaaattttgtttagaaatctgagaag 278  Q
    ||||||||||| ||||| || ||||||||||||||||    
T  1779273 ggtaaatctgttaaattctgcttagaaatctgagaag 1779309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 72 - 229
Target Start/End: Complemental strand, 9370643 - 9370486
Alignment:
Q  72 ttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttcactt 171  Q
    |||||||||||||| | |||||||||||||||||||||||| ||||| |  |||  ||||||||| ||| ||||||||||||||||||||||||||||||    
T  9370643 ttgaccatttcacacagattaagaaaagtgtaaagatgaaaaaaagaaaatgatttttttactgaattgtccttgtcattattttgaaactttttcactt 9370544  T
Q  172 ttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaa 229  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  9370543 ttaagtaatgattactttctttgtttcactacaaactttaatatggggatcacaaaaa 9370486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 72 - 290
Target Start/End: Original strand, 42846942 - 42847156
Alignment:
Q  72 ttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttcactt 171  Q
    |||||||||||||| | |||| |||| ||| ||| ||||||||  ||||  |||| ||||||| | ||| |||||| ||||||||||||  | |||||||    
T  42846942 ttgaccatttcacacagattatgaaaggtgcaaaaatgaaaga--gagaatgatatttttactaaattgtccttgttattattttgaaa--tcttcactt 42847037  T
Q  172 ttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatc 271  Q
    |||||||||||||| ||||||||||||| |||||||||| |||||| || ||||||||||||||||||||||||||| ||||||||| || ||| |||||    
T  42847038 ttaagtaatgattattttctttgttccattacaaacttttacatggagaacacaaaaagtatttataaggggtaaatttgtcaaattctgcttaaaaatc 42847137  T
Q  272 tgagaaggtcaagtattat 290  Q
    ||| |||||||||||||||    
T  42847138 tgaaaaggtcaagtattat 42847156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 75 - 258
Target Start/End: Original strand, 43377242 - 43377423
Alignment:
Q  75 accatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttcactttta 174  Q
    ||||||||| | |||||||||||||||||||||||||||||||| |  |||||||||||||| |||  ||||| ||||||||||||| ||  ||||||||    
T  43377242 accatttcaaacaaattaagaaaagtgtaaagatgaaagaaagaaaatgatacttttactgaattgtacttgttattattttgaaacctt--cactttta 43377339  T
Q  175 agtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaatt 258  Q
    |||||||||||||||||||||||||||||||||||| || ||| ||  |||||||||||||||||| | ||||| |||||||||    
T  43377340 agtaatgattactttctttgttccactacaaacttttacttggagactacaaaaagtatttataagagataaatttgtcaaatt 43377423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 37 - 210
Target Start/End: Original strand, 31921617 - 31921788
Alignment:
Q  37 ttactactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactga 136  Q
    ||||||||||||||||| ||||||||||||  ||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||| ||||||| |    
T  31921617 ttactactccctccgtccctgaataagtgatctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatatttttactaa 31921716  T
Q  137 gttgcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 210  Q
     |||||||| | |||||||| ||||   ||||||||||| |||| ||||||||  |||||||||||||| ||||    
T  31921717 attgcccttattattatttttaaac--cttcacttttaaataataattactttaattgttccactacaagcttt 31921788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 149 - 288
Target Start/End: Original strand, 39646437 - 39646573
Alignment:
Q  149 attattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaat 248  Q
    ||||||||||||| ||  ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||    
T  39646437 attattttgaaacctt--cacttttaagtaatgattacttt-tttgttccactacaaacttttacatgaggaccacaaaaagtatttataaggggtaaat 39646533  T
Q  249 ctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
     ||||||||| | |||||||||||||||| ||||| ||||    
T  39646534 ttgtcaaattctatttagaaatctgagaatgtcaaatatt 39646573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 41 - 145
Target Start/End: Complemental strand, 30422692 - 30422588
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||| | |||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  30422692 tactccctccgtcgctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaacgatgaaagaaagagagtgatacttttactgagttg 30422593  T
Q  141 ccctt 145  Q
    |||||    
T  30422592 ccctt 30422588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 76 - 202
Target Start/End: Complemental strand, 16970419 - 16970295
Alignment:
Q  76 ccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttcacttttaa 175  Q
    |||||||||| | |||||||||||||||||||| ||||||||| |  |||| ||||||||| |||||||| | |||||||| ||||   |||||||||||    
T  16970419 ccatttcacacatattaagaaaagtgtaaagataaaagaaagataatgatatttttactgaattgcccttattattatttttaaac--cttcacttttaa 16970322  T
Q  176 gtaatgattactttctttgttccacta 202  Q
    ||||||||||||||||||||| |||||    
T  16970321 gtaatgattactttctttgtttcacta 16970295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 25898885 - 25898766
Alignment:
Q  36 attactactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactg 135  Q
    |||| ||||||||||||  ||||||||||||| || |||||||||||||| | |||||||| ||||||||||||||||||| | || |||| ||||||||    
T  25898885 attattactccctccgttcctgaataagtgac-tacttgaccatttcacacagattaagaagagtgtaaagatgaaagaaaaaaagtgatatttttactg 25898787  T
Q  136 agttgcccttgtcattatttt 156  Q
    | |||||||| | ||||||||    
T  25898786 aattgcccttattattatttt 25898766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 64 - 161
Target Start/End: Original strand, 39646327 - 39646426
Alignment:
Q  64 tgacatatttgaccatttcacataaattaagaaaag--tgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaac 161  Q
    |||||||||||||||||||| | | ||||||||||   |||||| ||||||||||||||  |||| ||||||||| |||||||||| |||||||||||||    
T  39646327 tgacatatttgaccatttcatacagattaagaaaaaaatgtaaaaatgaaagaaagagaatgatatttttactgaattgcccttgttattattttgaaac 39646426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 288
Target Start/End: Complemental strand, 16964945 - 16964869
Alignment:
Q  212 acatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    |||||| || ||||||||||||||||||||||||||  |||||||||||  ||| |||| |||||||||||||||||    
T  16964945 acatggagaccacaaaaagtatttataaggggtaaacttgtcaaattttacttaaaaatttgagaaggtcaagtatt 16964869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 120
Target Start/End: Original strand, 27922606 - 27922657
Alignment:
Q  69 tatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagaga 120  Q
    ||||||| ||||||||| | ||||||||||||||||||||||||||||||||    
T  27922606 tatttgatcatttcacacatattaagaaaagtgtaaagatgaaagaaagaga 27922657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 31922032 - 31922086
Alignment:
Q  234 ttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||||  |||||||||||| ||  |||| |||||||||||||||||    
T  31922032 ttataaggggtaaaattgtcaaattttgctttaaaatttgagaaggtcaagtatt 31922086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 43370667 - 43370707
Alignment:
Q  34 ttattactactccctccgtctctgaataagtgacatatttg 74  Q
    |||||| ||||||||||||| ||||||||||||| ||||||    
T  43370667 ttattattactccctccgtccctgaataagtgacctatttg 43370707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 41 - 288
Target Start/End: Original strand, 10593 - 10840
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10593 tactccctccgtccctgaataagtgacctatttgaccattccacataaattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 10692  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  10693 cccttgtcattattttgaaactttttcacttttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttataaa 10792  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||    
T  10793 gggtaaatctgtcaaattttgcttagaaatctgataaggtcaagtatt 10840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 41 - 288
Target Start/End: Complemental strand, 11254800 - 11254553
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11254800 tactccctccgtccctgaataagtgacctatttgaccattccacataaattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 11254701  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  11254700 cccttgtcattattttgaaactttttcacttttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttataaa 11254601  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||    
T  11254600 gggtaaatctgtcaaattttgcttagaaatctgataaggtcaagtatt 11254553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 41 - 288
Target Start/End: Complemental strand, 17493826 - 17493579
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| ||||||||||||| ||||||| ||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  17493826 tactccctccgtccctgaataagtgacctatttgatcatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactaagttg 17493727  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17493726 cccttgtcattattttgaaactttttcatttttaagtaatgattactttatttgttccactacaaactttaacatggggaccacaaaaagtatttataag 17493627  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  17493626 gggtaaatctgtcaaattttgtttagaaatctgagaagatcaagtatt 17493579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 41 - 288
Target Start/End: Complemental strand, 18575328 - 18575081
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| ||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18575328 tactccctccgtccctgaataagtgacctatttgatcatttcacacaaattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 18575229  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  18575228 cccttgtcattattttgaaactttttcacttttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 18575129  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
     | ||||| |||||||||||| ||||||||||||||||||| ||||||    
T  18575128 agataaatttgtcaaattttgcttagaaatctgagaaggtcgagtatt 18575081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 41 - 288
Target Start/End: Complemental strand, 27821073 - 27820826
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    |||||||| ||||  | |||||||||| ||||||||||||||||| | |||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  27821073 tactcccttcgtcctttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttactgagttg 27820974  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  27820973 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaattttaacatggggaccacaaaaagtatttataag 27820874  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27820873 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 27820826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 41 - 288
Target Start/End: Complemental strand, 39907208 - 39906963
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || |||||||||| ||||||||||||| ||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39907208 tactccctccgtcccttaataagtgacttatttgaccattttacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 39907109  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||    
T  39907108 cccttatcattattttgaaattttttcacttttaagtaatgattactttctttgttccactacaaactttaacat--ggaccacaaaaagtatttataag 39907011  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  39907010 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 39906963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 44 - 288
Target Start/End: Original strand, 38069898 - 38070142
Alignment:
Q  44 tccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgccc 143  Q
    ||||||||||  |||| ||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  38069898 tccctccgtccttgaacaagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagatagtgatacttttactgagttgccc 38069997  T
Q  144 ttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataagggg 243  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  38069998 ttgtcattattttgaaactttttcatttttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttataatggg 38070097  T
Q  244 taaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||||||||  |||||||||||||||||||||||||    
T  38070098 taaatctgtcaaattttgcctagaaatctgagaaggtcaagtatt 38070142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 41 - 290
Target Start/End: Original strand, 12738366 - 12738615
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||| ||||||| || ||||  |||| ||||||||||||||||| | |||||||||||||||||||| ||||||||| |  |||| ||||||||| |||    
T  12738366 tactctctccgtccctcaatacttgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagataatgatatttttactgaattg 12738465  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12738466 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaaatatttataag 12738565  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattat 290  Q
    |||||||| ||||||||| || |||||||||||| |||||||||||||||    
T  12738566 gggtaaatttgtcaaattctgcttagaaatctgataaggtcaagtattat 12738615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 64 - 290
Target Start/End: Original strand, 17335994 - 17336219
Alignment:
Q  64 tgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactt 163  Q
    |||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||  |||| |||||||||  || ||||||||||||||||||||||    
T  17335994 tgacctatttgacaatttcacataaattaagaaaa-tgtaaagatgaaagaaagagaatgatatttttactgaactgtccttgtcattattttgaaactt 17336092  T
Q  164 tttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtt 263  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||| || |    
T  17336093 tttcacttttaagtaatgattactttcgttgttccactagaaactttaacatgggaaccacaaaaagtatttataaggggtaaatctgtcaaattctgct 17336192  T
Q  264 tagaaatctgagaaggtcaagtattat 290  Q
    ||||||||| |||||||||||||||||    
T  17336193 tagaaatctaagaaggtcaagtattat 17336219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 41 - 290
Target Start/End: Complemental strand, 9754069 - 9753821
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || ||||  |||| || |||||||||||||| | |||||||||||||||||||||||||||||| |  |||| ||||||||| |||    
T  9754069 tactccctccgtccctcaatacttgacctacttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagataatgatatttttactgaattg 9753970  T
Q  141 cccttgtca-ttattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataa 239  Q
     |||||| | |||||||||||| ||  |||||||||||||||||||||||||||||| ||||||||||||| |||| | || |||||||| |||||||||    
T  9753969 tccttgttaattattttgaaacctt--cacttttaagtaatgattactttctttgtttcactacaaacttttacattgagaccacaaaaaatatttataa 9753872  T
Q  240 ggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattat 290  Q
    | ||||||| ||||||||| || |||||||| |||||||||||||||||||    
T  9753871 gaggtaaatttgtcaaattctgcttagaaatttgagaaggtcaagtattat 9753821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 36 - 288
Target Start/End: Original strand, 13243543 - 13243793
Alignment:
Q  36 attactactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactg 135  Q
    |||||||||||||||||| || ||||  | |  |||||||||||||||||   |||||||||||||||||||| ||||||||| |  |||| ||||||||    
T  13243543 attactactccctccgtc-ctcaatacttaatttatttgaccatttcacaccgattaagaaaagtgtaaagataaaagaaagataatgatatttttactg 13243641  T
Q  136 agttgcccttgtca-ttattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatt 234  Q
    | ||| |||||| | |||||||||||| ||  || |||||||||||||||| |||||||||||||||||||||||| |||| | || |||||||||||||    
T  13243642 aattgtccttgttaattattttgaaacctt--catttttaagtaatgattattttctttgttccactacaaacttttacattgagaccacaaaaagtatt 13243739  T
Q  235 tataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    |||||||||| ||| ||||||||| || |||||||| |||||||||||| ||||    
T  13243740 tataaggggtgaatttgtcaaattctgcttagaaatttgagaaggtcaaatatt 13243793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 41 - 210
Target Start/End: Complemental strand, 11147949 - 11147782
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| ||||||||||||| || |||| ||||||||| | ||||||||||||||||||||||||| ||||||  |||| ||||||||| |||    
T  11147949 tactccctccgtccctgaataagtgacctacttgatcatttcacacagattaagaaaagtgtaaagatgaaaggaagagaatgatatttttactgaattg 11147850  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 210  Q
    ||||| | |||||||| ||||   ||||||||||| |||| ||||||||  |||||||||||||||||||    
T  11147849 cccttattattatttttaaac--cttcacttttaaataataattactttaattgttccactacaaacttt 11147782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 5878176 - 5878222
Alignment:
Q  75 accatttcacataaattaagaaaagtgtaaagatgaaagaaagagag 121  Q
    ||||||||||||| ||||||||||||||| | |||||||| ||||||    
T  5878176 accatttcacatagattaagaaaagtgtataaatgaaagagagagag 5878222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 29638457 - 29638412
Alignment:
Q  75 accatttcacataaattaagaaaagtgtaaagatgaaagaaagaga 120  Q
    ||||||||||| | ||||||||||||||| | ||||||||||||||    
T  29638457 accatttcacacagattaagaaaagtgtataaatgaaagaaagaga 29638412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 41 - 288
Target Start/End: Complemental strand, 39788293 - 39788046
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    |||||||| |||| ||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39788293 tactcccttcgtccctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 39788194  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  39788193 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 39788094  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||    
T  39788093 gggtaaatctgtcaaattttgcttagaaatctgataaggtcaagtatt 39788046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 41 - 288
Target Start/End: Original strand, 40071449 - 40071696
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || |||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40071449 tactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 40071548  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  40071549 cccttgtcattattttgaaactttttcacttttaagcaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 40071648  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40071649 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 40071696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 41 - 288
Target Start/End: Original strand, 37064753 - 37065000
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    |||||| |||||| ||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37064753 tactccatccgtccctgaataagtgacctatttgatcatttcacatagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 37064852  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  37064853 cccttgtcatttttttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgaggaccacaaaaagtatttataag 37064952  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||    
T  37064953 gggtaaatatgtcaaattttgcttagaaatctgagaaggtcaagtatt 37065000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 41 - 288
Target Start/End: Original strand, 54438157 - 54438404
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || |||||||||| |||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  54438157 tactccctccgtccctaaataagtgacctatttgaccatttcacaccgattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 54438256  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  54438257 cccttgtcattattttaaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 54438356  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||    
T  54438357 gggtaaatctgtcaaattttgcttagaaatctgagaagatcaagtatt 54438404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 41 - 288
Target Start/End: Original strand, 925136 - 925383
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || |||||||||| ||||||| ||||||||| | |||||||||||||||||||| ||||||| | || ||||||||||||||||||    
T  925136 tactccctccgtcccttaataagtgacttatttgatcatttcacacagattaagaaaagtgtaaagataaaagaaataaagtgatacttttactgagttg 925235  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  925236 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 925335  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  925336 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 925383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 41 - 288
Target Start/End: Complemental strand, 17494053 - 17493806
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || |||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  17494053 tactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttattgagttg 17493954  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  17493953 cccttgtcattattttgaaactttttcacttttaagtaataattattttctttgttccactacaaactttaacatggggaccacaaaaagtttttataag 17493854  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||    
T  17493853 gggtaaatctgtcaaattttgcttagaaatctgagaagatcaagtatt 17493806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 41 - 290
Target Start/End: Complemental strand, 20789972 - 20789724
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||  ||||||||||||  ||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  20789972 tactccctccgttcctgaataagtgatctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagctg 20789873  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20789872 cc-ttgtcattattttgaaactttttcacttttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 20789774  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattat 290  Q
    || |||||||||||||||||  |||||||||||||||| |||||||||||    
T  20789773 ggataaatctgtcaaattttacttagaaatctgagaagatcaagtattat 20789724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 41 - 288
Target Start/End: Complemental strand, 47199786 - 47199539
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||  ||||||||||||  ||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||| ||||| |||||||    
T  47199786 tactccctccgtacctgaataagtgatctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatatttttattgagttg 47199687  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  47199686 cccttgtcattattttaaaactttttcacttttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttatatg 47199587  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    |||||||||||| ||||||||  |||||||||||||||||||||||||    
T  47199586 gggtaaatctgttaaattttgcctagaaatctgagaaggtcaagtatt 47199539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 44 - 290
Target Start/End: Original strand, 33800786 - 33801031
Alignment:
Q  44 tccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgccc 143  Q
    |||||||||| ||||||||||||| ||||||||||||||||| | ||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  33800786 tccctccgtccctgaataagtgacctatttgaccatttcacacagattcagaaaagtgtaaagatggaagaaagagagtgatacttttactgagttgccc 33800885  T
Q  144 ttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataagggg 243  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| ||    
T  33800886 ttgtcatcattttgaaactttttcacttttaaataatgattactttctttgttccactacaaactttaatatggggaccac-aaaagtatttataagagg 33800984  T
Q  244 taaatctgtcaaattttgtttagaaatctgagaaggtcaagtattat 290  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||    
T  33800985 taaatctgtcaaattttacttagaaatctgagaaggtcaagtattat 33801031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 41 - 290
Target Start/End: Original strand, 34408657 - 34408906
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| ||||||||||||| |||||| |||||||||| | |||| |||||||||||||||||||||||||||  |||||||||| |||||||    
T  34408657 tactccctccgtccctgaataagtgacctatttggccatttcacacatattaggaaaagtgtaaagatgaaagaaagagaatgatacttttattgagttg 34408756  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||| ||| |||||||||||||||||||    
T  34408757 cccttgtcattattttgaaactttttcacttttaagtaatgattattttctttgttatactacaaactttaacatgtggaccacaaaaagtatttataag 34408856  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattat 290  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||||    
T  34408857 gggtaaatctgtcaaattttacctagaaatctgagaaggtcaagtattat 34408906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 41 - 290
Target Start/End: Complemental strand, 21240626 - 21240377
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| ||  |||  |||| || |||||||||||||| | ||||||||||||||| ||||||||||||||||  |||| ||||||||| |||    
T  21240626 tactccctccgtccctcgatacttgacctacttgaccatttcacacagattaagaaaagtgtagagatgaaagaaagagaatgatatttttactgaattg 21240527  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
     | |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  21240526 acattgtcactattttgaaactttttcatttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttatatg 21240427  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattat 290  Q
    |||||||||||||||||| |  |||||| |||||||||||||||||||||    
T  21240426 gggtaaatctgtcaaattctacttagaagtctgagaaggtcaagtattat 21240377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 72 - 290
Target Start/End: Original strand, 32217968 - 32218186
Alignment:
Q  72 ttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttcactt 171  Q
    |||||||||||||| | |||||||| |||||||||||||||||||||||   ||| ||||||||| | | ||||||||||||||||||||||||||||||    
T  32217968 ttgaccatttcacacagattaagaagagtgtaaagatgaaagaaagagaattatatttttactgaatagtccttgtcattattttgaaactttttcactt 32218067  T
Q  172 ttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatc 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| || ||| |||||    
T  32218068 ttaagtaatgattactttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataaggggtaaatctgtcaaattctgcttaaaaatc 32218167  T
Q  272 tgagaaggtcaagtattat 290  Q
    ||||||  |||||||||||    
T  32218168 tgagaaaatcaagtattat 32218186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 72 - 281
Target Start/End: Complemental strand, 52101317 - 52101108
Alignment:
Q  72 ttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttcactt 171  Q
    ||||| |||||||| | |||||||||||||||||||||||||||| | |  |||| ||||||||| |||| |||||||||||||||||| ||||||||||    
T  52101317 ttgactatttcacacagattaagaaaagtgtaaagatgaaagaaatataatgatatttttactgaattgcacttgtcattattttgaaattttttcactt 52101218  T
Q  172 ttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatc 271  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||| ||| |||||    
T  52101217 ttaagtaatggttattttctttgttccactacaaactttaacatgggaaccacaaaaagtatttataaagggtaaatctgtcaaattttgcttataaatc 52101118  T
Q  272 tgagaaggtc 281  Q
    ||||||||||    
T  52101117 tgagaaggtc 52101108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 89 - 288
Target Start/End: Original strand, 53509690 - 53509889
Alignment:
Q  89 attaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttcacttttaagtaatgattactt 188  Q
    |||| ||||||||||||||||||||||| |||  |||| | ||||||| ||| | |||||||||||||||||||||||||||||||| ||||||||| ||    
T  53509690 attatgaaaagtgtaaagatgaaagaaaaagaatgatattgttactgaattgtcattgtcattattttgaaactttttcacttttaaataatgattattt 53509789  T
Q  189 tctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||| ||||||||| |  |||||||||||| |||||||| ||||    
T  53509790 tctttgttccactacaaattttaacatggggatcacaaaaagtatttataaggaataaatatgtcaaattctccttagaaatctgataaggtcaaatatt 53509889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 78 - 280
Target Start/End: Original strand, 28910195 - 28910395
Alignment:
Q  78 atttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttcacttttaagt 177  Q
    |||||||||| |||||||||| || ||||||||||||||||||  |||| ||||||||| ||| |||||| ||||||||||||| ||  |||||||||||    
T  28910195 atttcacatagattaagaaaaatgcaaagatgaaagaaagagaatgatatttttactgaattgtccttgttattattttgaaacctt--cacttttaagt 28910292  T
Q  178 aatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatctgagaa 277  Q
    ||||||||||||||||||||||||| ||||||| ||||||  | ||||||||||||||||||||||||||| ||||||||| || ||| |||||||||||    
T  28910293 aatgattactttctttgttccactagaaacttttacatggaaaccacaaaaagtatttataaggggtaaatttgtcaaattctgcttaaaaatctgagaa 28910392  T
Q  278 ggt 280  Q
    |||    
T  28910393 ggt 28910395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 72 - 288
Target Start/End: Original strand, 3172051 - 3172266
Alignment:
Q  72 ttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtca-ttattttgaaactttttcact 170  Q
    |||||||||||||| | |||||||||| ||||||||||||| ||||| |  |||| ||||||||| ||| |||||| | |||||||||||| ||  ||||    
T  3172051 ttgaccatttcacacagattaagaaaaatgtaaagatgaaaaaaagataatgatatttttactgaattgtccttgttaattattttgaaacctt--cact 3172148  T
Q  171 tttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaat 270  Q
    |||||||||||||||||||||||||||||||||||||||| |||| | || ||||||||||||||||||  ||||||| ||||||||| || ||||||||    
T  3172149 tttaagtaatgattactttctttgttccactacaaacttttacattgagaccacaaaaagtatttataaaaggtaaatttgtcaaattctgcttagaaat 3172248  T
Q  271 ctgagaaggtcaagtatt 288  Q
     |||||| ||||||||||    
T  3172249 ttgagaaagtcaagtatt 3172266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 72 - 288
Target Start/End: Complemental strand, 46870874 - 46870660
Alignment:
Q  72 ttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttcactt 171  Q
    ||||| |||||||| | | ||| ||||||| || |||||||||||||||  |||| ||||||||| | | |||||| ||||||||||||| ||  |||||    
T  46870874 ttgacaatttcacacatagtaaaaaaagtgcaaggatgaaagaaagagaatgatatttttactgaatagtccttgttattattttgaaacctt--cactt 46870777  T
Q  172 ttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatc 271  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||| ||||||||| |  ||| |||||    
T  46870776 ttaagtaatgatgactttctttgttccactacaaacttttacatggggaccacaaaaagtatttataagggataaatttgtcaaattgtacttaaaaatc 46870677  T
Q  272 tgagaaggtcaagtatt 288  Q
    |||| ||||||||||||    
T  46870676 tgagcaggtcaagtatt 46870660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 36 - 181
Target Start/End: Original strand, 51744514 - 51744659
Alignment:
Q  36 attactactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactg 135  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||||||||||| | |||||||||||||||||||||  |||||||||| ||||||||||||     
T  51744514 attaatactctctccgtccctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgtgagaaagagagtgatacttttacta 51744613  T
Q  136 agttgcccttgtcattattttgaaactttttcacttttaagtaatg 181  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  51744614 agttgcccttgtcattattttgaaacttgttcacttttaagtaatg 51744659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 76 - 288
Target Start/End: Complemental strand, 41555720 - 41555515
Alignment:
Q  76 ccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttcacttttaa 175  Q
    |||||||||| | ||||||||||||||||||||||||||    ||  |||| ||||||||| ||| | ||   |||||||| |||| ||  |  ||||||    
T  41555720 ccatttcacacagattaagaaaagtgtaaagatgaaaga----gaatgatatttttactgaattgtcatt---attatttttaaaccttcacttttttaa 41555628  T
Q  176 gtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatctgag 275  Q
    ||||||||||||||||||||| ||||||||||||| |||| | || |||||||||||  |||||||||||||  |||||||||  | ||| |||| ||||    
T  41555627 gtaatgattactttctttgtttcactacaaacttttacatagagaccacaaaaagtaactataaggggtaaacttgtcaaattaagcttaaaaatttgag 41555528  T
Q  276 aaggtcaagtatt 288  Q
    |||||||| ||||    
T  41555527 aaggtcaattatt 41555515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 51744657 - 51744731
Alignment:
Q  214 atggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  51744657 atggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatttgagaaggtcaagtatt 51744731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 41 - 157
Target Start/End: Complemental strand, 10441631 - 10441517
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| ||||||||||||| || |||||||||||||| | ||||||| |||||||||||| ||||||  |||| |||| ||||||||| |||    
T  10441631 tactccctccgtccctgaataagtgacctacttgaccatttcacacagattaagataagtgtaaagataaaagaa--agagtgatatttttactgaattg 10441534  T
Q  141 cccttgtcattattttg 157  Q
    ||||| | |||||||||    
T  10441533 cccttattattattttg 10441517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 42 - 210
Target Start/End: Original strand, 28689666 - 28689829
Alignment:
Q  42 actccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgc 141  Q
    |||||||| ||| ||||||||||||  |||||||| |||||||| | |||||||||| ||||||||||||  ||| | |  |||| ||||||||| ||||    
T  28689666 actccctctgtccctgaataagtgatctatttgactatttcacacagattaagaaaaatgtaaagatgaagaaaaaaaa--gatatttttactgaattgc 28689763  T
Q  142 ccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 210  Q
    |||| | |||||||| ||||   |||| |||||| |||| ||||||||  |||||||||||||||||||    
T  28689764 ccttattattatttttaaac--cttca-ttttaaataataattactttaattgttccactacaaacttt 28689829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 35029194 - 35029154
Alignment:
Q  72 ttgaccatttcacataaattaagaaaagtgtaaagatgaaa 112  Q
    |||||||||||||||| ||||||||||||||| | ||||||    
T  35029194 ttgaccatttcacatagattaagaaaagtgtataaatgaaa 35029154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 41 - 288
Target Start/End: Complemental strand, 4041247 - 4041000
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  4041247 tactccctccgtcccttaataagtgacatatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagggagtgatacttttactgagttg 4041148  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  4041147 tccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaacaagtatttataag 4041048  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  4041047 gggtaaatccgtcaaattttgcttagaaatctgagaaggtcaagtatt 4041000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 41 - 288
Target Start/End: Complemental strand, 6392571 - 6392324
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    |||||||||||||  |||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  6392571 tactccctccgtccttgaataagtgacatattttaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactaagttg 6392472  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6392471 cccttgtcattattttgaaactttttcacttttaagtaatgattaatttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 6392372  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||    
T  6392371 gggtaaatctgtcaaattttgcttagaaatctgagaaggtaaagtatt 6392324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 41 - 288
Target Start/End: Original strand, 40232115 - 40232362
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || |||||||||  ||||||||||||||||| | |||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  40232115 tactccctccgtcccttaataagtgatctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttactgagttg 40232214  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  40232215 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 40232314  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||    
T  40232315 gggtaaatctgtcaaattttgcttagaaatttgagaaggtcaagtatt 40232362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 58 - 288
Target Start/End: Complemental strand, 29737688 - 29737458
Alignment:
Q  58 aataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttg 157  Q
    |||||||||| ||||||||||||||||| | ||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||    
T  29737688 aataagtgacttatttgaccatttcacacagattaagaaaagtgtaaaaataaaagaaagagagtgatacttttactgagttgcccttgtcattattttg 29737589  T
Q  158 aaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaat 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29737588 aaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaat 29737489  T
Q  258 tttgtttagaaatctgagaaggtcaagtatt 288  Q
    |||| |||||||||| |||||||||||||||    
T  29737488 tttgcttagaaatctaagaaggtcaagtatt 29737458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 41 - 288
Target Start/End: Original strand, 27596086 - 27596332
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || |||||||||| ||||||||||||| ||| | ||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  27596086 tactccctccgtccctaaataagtgacttatttgaccattttacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgggttg 27596185  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||| ||||||||||||||||||     
T  27596186 cccttgtcattattttgaaactttttcacttttaagtaatgattattttctttgtttcactacaaactttaacat-gggaccacaaaaagtatttataaa 27596284  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||    
T  27596285 gggtaaatctgtcaaattttgcctagaaatctgagaaggtcaagtatt 27596332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 49 - 288
Target Start/End: Original strand, 31689361 - 31689600
Alignment:
Q  49 ccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtc 148  Q
    ||||| || |||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31689361 ccgtccctaaataagtgacatatttcaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttgtc 31689460  T
Q  149 attattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaat 248  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||| ||||| ||||||||||||| ||| |||||||||||| ||||||||||||||    
T  31689461 attattttgaaactttttcacttttaaaaaatgattactttctttgtttcactataaactttaacatgaggaccacaaaaagtatatataaggggtaaat 31689560  T
Q  249 ctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  31689561 ctgtcaaattttgcttagaaatctgagaaggtcaagtatt 31689600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 41 - 288
Target Start/End: Original strand, 25943649 - 25943892
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| ||||||||||||| ||||||| ||||||||| |  ||||||||| |||||||||||||||||||||| |||||||||||||| |||    
T  25943649 tactccctccgtccctgaataagtgacctatttgatcatttcacaga--ttaagaaaattgtaaagatgaaagaaagagagtgatacttttactgaattg 25943746  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   || ||||||||||||||    
T  25943747 ccattgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggga--ccataaagtatttataag 25943844  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  25943845 gggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 25943892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 41 - 288
Target Start/End: Original strand, 41427648 - 41427895
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    |||||||||||||||| ||||| ||   ||||||| ||||||||| | ||||| |||||||||||||||||||||||||||  ||||||||| ||| |||    
T  41427648 tactccctccgtctctaaataaatggtctatttgatcatttcacacagattaaaaaaagtgtaaagatgaaagaaagagagtaatacttttattgaattg 41427747  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  41427748 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgtttcactacaaactttaacatggggaccacaaaaagtatttataag 41427847  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||||||||||| |||||||||||||||| |||| ||||    
T  41427848 gggtaaatctgtcaaattttgcttagaaatctgagaagatcaaatatt 41427895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 58 - 288
Target Start/End: Original strand, 24300171 - 24300391
Alignment:
Q  58 aataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttg 157  Q
    |||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||              
T  24300171 aataagtgacatatttgaccatttcacacagattaagaaaagtgtgaagatgaaagaaagagagtgatacttttactgagttgcccttgt---------- 24300260  T
Q  158 aaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaat 257  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24300261 aaactttttcacttttaagtaatgattactttctttgtttcactacaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaat 24300360  T
Q  258 tttgtttagaaatctgagaaggtcaagtatt 288  Q
    |||| |||||||| ||| |||||||||||||    
T  24300361 tttgcttagaaatttgataaggtcaagtatt 24300391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 89 - 288
Target Start/End: Original strand, 38276593 - 38276792
Alignment:
Q  89 attaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttcacttttaagtaatgattactt 188  Q
    ||||||||||| ||||||||||||||||||||  |||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38276593 attaagaaaagagtaaagatgaaagaaagagaatgatgtttttactgaattgcccttgtcattattttgaaactttttcacttttaagtaatgattactt 38276692  T
Q  189 tctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    |||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||| || |||||||| ||| |||||||||||||    
T  38276693 tctttgttccactacaaactttaatatgaggaccacaaaaagtatttataaggggtaaatctgtcaaattctgcttagaaatatgaaaaggtcaagtatt 38276792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 75 - 288
Target Start/End: Original strand, 21442834 - 21443045
Alignment:
Q  75 accatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttcactttta 174  Q
    ||||||||| | | |||||||||||||||||||||||| ||| |||  |||| ||||||| | |||||||||| ||||||||||||||||  ||||||||    
T  21442834 accatttcatacagattaagaaaagtgtaaagatgaaaaaaatagaatgatatttttactaaattgcccttgttattattttgaaacttt--cactttta 21442931  T
Q  175 agtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatctga 274  Q
    ||||||| ||||||||||| ||||||| |||||||| |||||| || ||||||||||||||||||||| ||||| ||||||||| |  ||| ||||||||    
T  21442932 agtaatggttactttctttattccactgcaaacttttacatggagaccacaaaaagtatttataagggataaatttgtcaaattctacttaaaaatctga 21443031  T
Q  275 gaaggtcaagtatt 288  Q
    ||||||||||||||    
T  21443032 gaaggtcaagtatt 21443045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 103 - 288
Target Start/End: Complemental strand, 48838296 - 48838113
Alignment:
Q  103 aaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccacta 202  Q
    |||||| ||||||||| |  |||| ||||||| | ||| |||||| |||||||| |||||||  ||||||||||||||||||||||||||||||||||||    
T  48838296 aaagataaaagaaagaaaatgatatttttactaaattgtccttgttattattttaaaacttt--cacttttaagtaatgattactttctttgttccacta 48838199  T
Q  203 caaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    || ||||| |||||| || ||||||||||||||||||||||||||| ||||||||| || ||| ||||||||||| ||||||||||    
T  48838198 cacacttttacatggagaccacaaaaagtatttataaggggtaaatttgtcaaattctgcttaaaaatctgagaaagtcaagtatt 48838113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 41 - 210
Target Start/End: Complemental strand, 22338268 - 22338101
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || |||||||||| || || ||||||||||| | ||||||||||||||||||||||||||||||||| |||| ||||||||| |||    
T  22338268 tactccctccgtccctaaataagtgacctacttaaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatatttttactgaattg 22338169  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 210  Q
    ||||| | |||||||| ||||   ||||||||||| |||| ||||||||   | ||||||||||||||||    
T  22338168 cccttattattatttttaaac--cttcacttttaaataataattactttaaatattccactacaaacttt 22338101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 50 - 210
Target Start/End: Complemental strand, 22620041 - 22619883
Alignment:
Q  50 cgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtca 149  Q
    |||| ||||||||||||| || |||| ||||||||| | ||||||||||||||||||||||||||||||||| |||| ||||| ||| ||||| || | |    
T  22620041 cgtccctgaataagtgacctacttgatcatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatatttttattgaattgcctttatta 22619942  T
Q  150 ttattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 210  Q
    ||||||| ||||   ||||||||||| |||| ||||||||  |||||||||||||||||||    
T  22619941 ttatttttaaac--cttcacttttaaataataattactttaattgttccactacaaacttt 22619883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 7380533 - 7380596
Alignment:
Q  39 actactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgt 102  Q
    |||||| ||||||||| |||||||||||  || |||||||||||||| | ||||| ||||||||    
T  7380533 actacttcctccgtctttgaataagtgatctacttgaccatttcacacagattaaaaaaagtgt 7380596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 4040947 - 4040980
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttg 74  Q
    ||||||||||||||||||||||||||| ||||||    
T  4040947 tactccctccgtctctgaataagtgacctatttg 4040980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 42834558 - 42834518
Alignment:
Q  36 attactactccctccgtctctgaataagtgacatatttgac 76  Q
    ||||||||||||||||||||| ||||| |||| ||||||||    
T  42834558 attactactccctccgtctctaaataaatgacctatttgac 42834518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 39 - 290
Target Start/End: Complemental strand, 50777299 - 50777048
Alignment:
Q  39 actactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagt 138  Q
    ||||||||||||||| || |||||||||| ||||||||||||||||| | |||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  50777299 actactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttactgagt 50777200  T
Q  139 tgcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttata 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  50777199 tgcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccccaaaaagtatttata 50777100  T
Q  239 aggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattat 290  Q
    ||||||||||||||||||||||| |||||||| | |||||||||||||||||    
T  50777099 aggggtaaatctgtcaaattttgcttagaaatttaagaaggtcaagtattat 50777048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 41 - 288
Target Start/End: Complemental strand, 46862856 - 46862609
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || |||||||||| ||||||||||||||||| | |||||||||||||||||||| |||||||||||| ||||||||| ||||||||    
T  46862856 tactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttcctgagttg 46862757  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  46862756 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 46862657  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||||||||||| ||| |||||| |||||||||||||||    
T  46862656 gggtaaatctgtcaaattttgcttaaaaatctaagaaggtcaagtatt 46862609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 41 - 288
Target Start/End: Original strand, 28036700 - 28036948
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatactttt-actgagtt 139  Q
    |||||||| |||| || |||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||| |||| ||||||||    
T  28036700 tactcccttcgtcccttaataagtgacttatttgaccatttcacacaaattaagaaaagtgtaaagataaaagaaagagagtgatattttttactgagtt 28036799  T
Q  140 gcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataa 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28036800 gcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataa 28036899  T
Q  240 ggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  28036900 gggataaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 28036948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 41 - 288
Target Start/End: Original strand, 1929217 - 1929463
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  1929217 tactccctccgtccctgaataagtgacatatttgatcatttcacacagattaagaaaagtgtaaagatgaaagaaaaagagtgatacttttactgagttg 1929316  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  1929317 cccttgtcattattttgaaactttttcacttttaagtaatgatt-ttttttttgttccactacaaactttaacatggggaccacaaaaaatatttataag 1929415  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||    
T  1929416 gggtaaatctgtcaaattttgcttagaaatatgagaaggtcaagtatt 1929463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 41 - 288
Target Start/End: Complemental strand, 32046133 - 32045886
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    |||||||||| || ||||||||||||  ||||||||||||||||| | ||||||||||||||||| |||||||||||| || ||||||||||| ||||||    
T  32046133 tactccctccatcactgaataagtgatttatttgaccatttcacacagattaagaaaagtgtaaaaatgaaagaaagaaagtgatacttttaccgagttg 32046034  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32046033 cccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataag 32045934  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||    
T  32045933 gggtaaatctttcaaattttgcttagaaatctgagaaggtcaagtatt 32045886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 44 - 288
Target Start/End: Original strand, 39150900 - 39151144
Alignment:
Q  44 tccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgccc 143  Q
    |||||||||| || |||||||||  ||||||||||||||||| | |||||||||| ||||||||| |||||||||||  |||||||||||||||||||||    
T  39150900 tccctccgtcccttaataagtgatctatttgaccatttcacacagattaagaaaaatgtaaagataaaagaaagagaatgatacttttactgagttgccc 39150999  T
Q  144 ttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataagggg 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  39151000 ttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgaggaccacaaaaagtatttataagggg 39151099  T
Q  244 taaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    |||||||||||||||||| |||||||||| |||||||||||||||    
T  39151100 taaatctgtcaaattttgcttagaaatctaagaaggtcaagtatt 39151144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 76 - 288
Target Start/End: Complemental strand, 38321910 - 38321698
Alignment:
Q  76 ccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttcacttttaa 175  Q
    |||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38321910 ccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttgtcattattttgaaactttttcacttttaa 38321811  T
Q  176 gtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatctgag 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| | |||||||| |||||||||||||    
T  38321810 gtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataagggttaaatcttttaaattttgcttagaaatctgag 38321711  T
Q  276 aaggtcaagtatt 288  Q
    |||||||||||||    
T  38321710 aaggtcaagtatt 38321698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 35 - 288
Target Start/End: Complemental strand, 8229370 - 8229116
Alignment:
Q  35 tattactactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaaga-gagggatacttttac 133  Q
    ||||||| ||||||| ||||||||||||||||  ||||||||||||||||| | |||||||||||||||||||||||| ||| | ||| |||| ||||||    
T  8229370 tattacttctccctcggtctctgaataagtgatttatttgaccatttcacacagattaagaaaagtgtaaagatgaaaaaaaaaagagtgatatttttac 8229271  T
Q  134 tgagttgcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtat 233  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||    
T  8229270 tgagttgcccttgtcattattttaaaactttttcacttttaagtaatgattactttctttatttcactacaaactttaacatggggaccacaaaaagtat 8229171  T
Q  234 ttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||||| |||||||||||| ||| |||||| ||||||| |||||||    
T  8229170 ttataaggggtaaatttgtcaaattttgcttaaaaatctaagaaggttaagtatt 8229116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 45 - 288
Target Start/End: Complemental strand, 46371217 - 46370980
Alignment:
Q  45 ccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgccct 144  Q
    ||||||||| || |||||||||  ||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  46371217 ccctccgtcccttaataagtgatctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgaattgccct 46371118  T
Q  145 tgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggt 244  Q
    ||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||    
T  46371117 tgtcattattttgaaactttttca-----aagtaatgattactttctttgttccactacaaactttaatat-gggaccacaaaaagtatttataaggggt 46371024  T
Q  245 aaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    |||| |||||||||||| ||||||||||||||||||||||||||    
T  46371023 aaatttgtcaaattttgcttagaaatctgagaaggtcaagtatt 46370980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 41 - 290
Target Start/End: Original strand, 1207452 - 1207699
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || ||||  |||| || |||||||||||||| | ||||||||||||||| |||||||||||||| |  |||| ||||||||| |||    
T  1207452 tactccctccgtcccttaatacttgacctacttgaccatttcacacagattaagaaaagtgtagagatgaaagaaagataatgatatttttactgaattg 1207551  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||  | | ||||||||||||||     
T  1207552 cccttgtcattattttgaaactttttcacttttaagtaatgattactttccttgttcctctacaaactttaacataggggac-ccaaaagtatttataa- 1207649  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattat 290  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||    
T  1207650 gggtaaatctgtcaaattctgcttagaaatctgagaaggtcaagtattat 1207699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 41 - 288
Target Start/End: Original strand, 40562436 - 40562681
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || ||||  |||| || |||||||||||||| | ||||||||||||||||||||||||||||||||  |||| ||||||||| |||    
T  40562436 tactccctccgtccctcaatacttgacctacttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagaatgatatttttactgaattg 40562535  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||||| |||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||| |||||| || |||||| ||||||||||||    
T  40562536 cccttgttattattttgaaactttt--acttttaagtaatgattactttctttgttctactacaaacttttacatggagaccacaaagagtatttataag 40562633  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    |||||||| | ||||||| || ||| |||| |||||| ||||||||||    
T  40562634 gggtaaatttatcaaattctgcttaaaaatatgagaatgtcaagtatt 40562681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 41 - 290
Target Start/End: Original strand, 9129401 - 9129651
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagaggg---atacttttactgag 137  Q
    ||||||||| ||| || |||| |||| ||| ||||| |||||||| | ||||| |||||||||||||| |||||||||||  |   ||| ||||||| |     
T  9129401 tactccctcggtccctcaatacgtgatatacttgactatttcacaaagattaacaaaagtgtaaagataaaagaaagagaatgataatatttttactcaa 9129500  T
Q  138 ttgcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttat 237  Q
    ||| |||||| |||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||| ||| |||||| || |||||||| |||||||    
T  9129501 ttgtccttgttattatttttaaac--tttcacttttaagtaatgattactttctttgttccactacaaaattttacatggagaccacaaaaaatatttat 9129598  T
Q  238 aaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattat 290  Q
    ||||||||||| | ||||||| || ||| |||||||||||||| || ||||||    
T  9129599 aaggggtaaatttatcaaattctgcttaaaaatctgagaaggtaaaatattat 9129651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 128 - 290
Target Start/End: Complemental strand, 38817984 - 38817825
Alignment:
Q  128 ttttactgagttgcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaa 227  Q
    ||||| ||| ||| |||||| ||||||||||||| ||  || ||||||||||| ||||||||||||||| ||||||||||||| ||||||||| ||||||    
T  38817984 ttttattgaattgtccttgttattattttgaaacctt--ca-ttttaagtaattattactttctttgtttcactacaaacttttacatggggaccacaaa 38817888  T
Q  228 aagtatttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattat 290  Q
    ||||||||||||||||||||| | |||||||||| |||||||| |||||| ||||| ||||||    
T  38817887 aagtatttataaggggtaaatttatcaaattttgcttagaaatttgagaaagtcaaatattat 38817825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 9590673 - 9590625
Alignment:
Q  72 ttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagaga 120  Q
    |||||||||||||||| |||||||||| |||| | |||||||| |||||    
T  9590673 ttgaccatttcacatagattaagaaaattgtataaatgaaagagagaga 9590625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 41 - 288
Target Start/End: Original strand, 28541587 - 28541834
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || |||||||||| ||||||||||||| ||| | ||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  28541587 tactccctccgtccctaaataagtgacctatttgaccattttacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgggttg 28541686  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28541687 cccttgtcattattttgaaactttttcacttttaagtaatgattattttttttgttccactacaaactttaacatggggaccacaaaaagtatttataag 28541786  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||    
T  28541787 gggtaaatctgtcaaattttgcctagaaatctgagaaggtcaagtatt 28541834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 56 - 288
Target Start/End: Complemental strand, 29182876 - 29182644
Alignment:
Q  56 tgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattt 155  Q
    |||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  29182876 tgaataagtgacatatttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgagttgcccttgtcattattt 29182777  T
Q  156 tgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaa 255  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||| ||||||||||| ||||||||||||||    
T  29182776 tgaaactttttcacttttaagtaatgattattttctttgttccactacaaactttaacatagggaccacaaaatgtatttataagaggtaaatctgtcaa 29182677  T
Q  256 attttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||  |||||||||||||||||||||||||    
T  29182676 attttgcctagaaatctgagaaggtcaagtatt 29182644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 41 - 288
Target Start/End: Complemental strand, 12350572 - 12350325
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    |||||||||||||  | |||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  12350572 tactccctccgtccataaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatgcttttactgagttg 12350473  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||| |||||||||||| ||||||    
T  12350472 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttttactacaaactttaacatgaggaccacaaaaagtatatataag 12350373  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||||||||||| |||||||| |||||||||||| ||||    
T  12350372 gggtaaatctgtcaaattttgcttagaaatttgagaaggtcaaatatt 12350325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 41 - 288
Target Start/End: Complemental strand, 16436075 - 16435832
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| ||||||||||||| ||||||| ||||||||| | ||||||||||||||||||||||||||||| ||    ||||||||||||||||    
T  16436075 tactccctccgtccctgaataagtgacctatttgagcatttcacacagattaagaaaagtgtaaagatgaaagaaagtga----tacttttactgagttg 16435980  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||| |    
T  16435979 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgagaaccacaaaaagtatttatatg 16435880  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||||||||||  |||||||| |||||||||||||||||    
T  16435879 gggtaaatctgtcaaattttccttagaaatttgagaaggtcaagtatt 16435832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 41 - 288
Target Start/End: Complemental strand, 30736719 - 30736472
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    |||||||||||||||| ||||  |||| ||||| || |||||||| | ||||||||||||||||||||||||||||||||  |||| ||||||||| |||    
T  30736719 tactccctccgtctctcaatacttgacctatttaactatttcacacagattaagaaaagtgtaaagatgaaagaaagagaatgatatttttactgaattg 30736620  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  30736619 tccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggattacaaaaagtatttataag 30736520  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||||||||||| |||||||||||||||| |||| ||||    
T  30736519 gggtaaatctgtcaaattttgcttagaaatctgagaagatcaaatatt 30736472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 41 - 288
Target Start/End: Complemental strand, 1241408 - 1241162
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| |||||||||| |  ||||| | ||||||||| |||||||||||| |||||| |||||||||||| || ||||||||||||||||||    
T  1241408 tactccctccgtccctgaataagtaatctatttcatcatttcacacaaattaagaaaaatgtaaaaatgaaagaaagaaagtgatacttttactgagttg 1241309  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||    
T  1241308 cccttgtcattattttgaaactttttca-ttttaagtaatgattactttctttgttccactgcaaactttaatatggggaccacaaaaagtatttataag 1241210  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
     |||||||||||||||||||| |||||||||||||||| |||||||||    
T  1241209 aggtaaatctgtcaaattttgcttagaaatctgagaagttcaagtatt 1241162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 72 - 290
Target Start/End: Original strand, 7271109 - 7271327
Alignment:
Q  72 ttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttcactt 171  Q
    ||||| |||||||| | |||||||||||||||||||||||||||| |||  |||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  7271109 ttgacaatttcacacagattaagaaaagtgtaaagatgaaagaaatagaatgatatttttactgaattgcccttgtcattattttgaaactttttcactt 7271208  T
Q  172 ttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatc 271  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| || |||||||||    
T  7271209 ttaagtaatgattactttctttattccactacaaactttaacatggggacaacaaaaagtatttataaggggtaaatctgtcaaattctgcttagaaatc 7271308  T
Q  272 tgagaaggtcaagtattat 290  Q
    | |||||||||||||||||    
T  7271309 taagaaggtcaagtattat 7271327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 43 - 288
Target Start/End: Complemental strand, 13042268 - 13042025
Alignment:
Q  43 ctccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcc 142  Q
    |||||||||||  |||||||||||  |||||||  |||||||| | ||||| ||||||||||||||||||||||||||| |||| |||||||||||||||    
T  13042268 ctccctccgtccttgaataagtgatctatttgattatttcacacagattaa-aaaagtgtaaagatgaaagaaagagagtgatatttttactgagttgcc 13042170  T
Q  143 cttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggg 242  Q
    |||||||||||||  ||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  13042169 cttgtcattatttaaaaaatttt-cacttttaagtaatgattattttctttgttccactacaaactttaacatagggaccacaaaaagtatttataaggg 13042071  T
Q  243 gtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||    
T  13042070 gtaaatctgtcaaattttgcttaaaaatctgagaaggtcaagtatt 13042025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 41 - 288
Target Start/End: Original strand, 31013495 - 31013742
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    |||||| |||||| || ||||  |||| ||||||||||||||| | | ||||||||||||||||| | |||||||||| |  |||| ||||||||| |||    
T  31013495 tactccttccgtccctcaatacttgacctatttgaccatttcatacagattaagaaaagtgtaaaaacgaaagaaagataatgatatttttactgaattg 31013594  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||  |||||||| ||||||||||    
T  31013595 cccttatcattattttgaaactttttcacttttaagtaatgattattttctttgttctactacaaactttaatatgggggccacaaaaaatatttataag 31013694  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    || |||||| |||||||| || |||||||||||||||| |||||||||    
T  31013695 ggataaatccgtcaaattctgcttagaaatctgagaagatcaagtatt 31013742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 93 - 288
Target Start/End: Complemental strand, 1870780 - 1870587
Alignment:
Q  93 agaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttcacttttaagtaatgattactttctt 192  Q
    |||||||| |||||||||||||||| ||  |||| ||||||| | |||||||||| ||||||||||| | ||  ||||||||||||||||||||||||||    
T  1870780 agaaaagtataaagatgaaagaaagggaatgatatttttactaaattgcccttgttattattttgaagcctt--cacttttaagtaatgattactttctt 1870683  T
Q  193 tgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||| || ||| ||||||||||||||||||||||    
T  1870682 tgttccactacaaacttttacatggagatcacaaaaagtatttataaggggtaaatttgtcaaattctgcttaaaaatctgagaaggtcaagtatt 1870587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 64 - 288
Target Start/End: Complemental strand, 13210618 - 13210397
Alignment:
Q  64 tgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactt 163  Q
    ||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||  |||  ||||||||| | |||||||| || ||||||||||||    
T  13210618 tgacatacttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagaatgattattttactgaatcgcccttgttat-attttgaaactt 13210520  T
Q  164 tttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgtt 263  Q
    |  |||||||||||||  ||||||||||||||||||||||||||||| |||||| || |||||||| ||||||||| |||||||| ||||||||| || |    
T  13210519 t--cacttttaagtaagaattactttctttgttccactacaaacttttacatggagaccacaaaaaatatttataatgggtaaatttgtcaaattctgct 13210422  T
Q  264 tagaaatctgagaaggtcaagtatt 288  Q
    || |||| |||||||||||||||||    
T  13210421 taaaaatttgagaaggtcaagtatt 13210397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 72 - 206
Target Start/End: Original strand, 31833622 - 31833751
Alignment:
Q  72 ttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttgcccttgtcattattttgaaactttttcactt 171  Q
    |||||||||| ||| |||||||||||||||||||||||||||||| | |  |||| ||||||| | ||||||||   |||||||||||||   |||| ||    
T  31833622 ttgaccattttacacaaattaagaaaagtgtaaagatgaaagaaaaataatgatatttttactaaattgccctt---attattttgaaac--cttcattt 31833716  T
Q  172 ttaagtaatgattactttctttgttccactacaaa 206  Q
    |||||||||||||| ||||||||||||||||||||    
T  31833717 ttaagtaatgattattttctttgttccactacaaa 31833751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 287
Target Start/End: Original strand, 31833747 - 31833811
Alignment:
Q  223 acaaaaagtatttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtat 287  Q
    ||||||||||||| |||||| ||||| ||||||||| || ||| |||||||||||||||||||||    
T  31833747 acaaaaagtatttttaagggataaatttgtcaaattatgcttaaaaatctgagaaggtcaagtat 31833811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 28541887 - 28541854
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttg 74  Q
    ||||||||||||||||||||||||||| ||||||    
T  28541887 tactccctccgtctctgaataagtgacttatttg 28541854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 41 - 288
Target Start/End: Original strand, 10017 - 10264
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    |||||||||| || || |||||||||| ||||||||||||||||| | |||||||||||||||||||| |||||||||||| |||| |||||||||||||    
T  10017 tactccctccatcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatatttttactgagttg 10116  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  10117 cccttgttattattttgaaactttttcacttttaagtaatgattactttctttgttccactataaactttaacatggggaccacaaaaagtatttataag 10216  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    || |||||||||||||||||| |||||||| |||||||||||||||||    
T  10217 ggataaatctgtcaaattttgcttagaaatatgagaaggtcaagtatt 10264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 41 - 288
Target Start/End: Complemental strand, 70053 - 69806
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || |||||||||| ||||||||||||| | | | ||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  70053 tactccctccgtccctaaataagtgacttatttgaccatttgatacagattaagaaaagtgtaaagatgaaagaaagagagtgataattttactgagttg 69954  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  69953 tccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaatacggggatcacaaaaagtatttataag 69854  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
     |||||||||||||||||||| |||||||| |||||||||||||||||    
T  69853 cggtaaatctgtcaaattttgcttagaaatttgagaaggtcaagtatt 69806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 69753 - 69786
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttg 74  Q
    ||||||||||||| ||||||||||||||||||||    
T  69753 tactccctccgtccctgaataagtgacatatttg 69786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 41 - 290
Target Start/End: Complemental strand, 4114 - 3865
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| |||||||| | |  ||||||||||||||||| | ||||||||||| |||||||||||| ||| |||| | |||||||||||||||     
T  4114 tactccctccgtccctgaataaataatctatttgaccatttcacacagattaagaaaagggtaaagatgaaaaaaaaagagcgctacttttactgagtta 4015  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| | |||||||||||||||||    
T  4014 cccttgtcattattttaaaactttttcacttttaagtaatgattactttctttgttccattacaaactttaacatgaggaccgcaaaaagtatttataag 3915  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattat 290  Q
     |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3914 aggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattat 3865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 39 - 288
Target Start/End: Complemental strand, 16646 - 16410
Alignment:
Q  39 actactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagt 138  Q
    |||| |||||||||| || |||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||| |             ||    
T  16646 actattccctccgtccctaaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtg-------------gt 16560  T
Q  139 tgcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttata 238  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  16559 tgcctttgtcattattttgaaactttttcacttttaagtaatgattactttctttgtttcactacaaactttaacatggggaccacaaaaagtatttata 16460  T
Q  239 aggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    | ||||||||||||||||||||| |||||||| |||||||||||||||||    
T  16459 aagggtaaatctgtcaaattttgcttagaaatttgagaaggtcaagtatt 16410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 41 - 220
Target Start/End: Original strand, 92169 - 92348
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||  ||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  92169 tactccctccgttcctgaataagtgacctatgtgaccatttcacatagattaagaaaagtgtaaagatgaaagaaagagagtgacacttttactgagttg 92268  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  92269 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggga 92348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1194 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold1194
Description:

Target: scaffold1194; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 41 - 288
Target Start/End: Complemental strand, 1267 - 1032
Alignment:
Q  41 tactccctccgtctctgaataagtgacatatttgaccatttcacataaattaagaaaagtgtaaagatgaaagaaagagagggatacttttactgagttg 140  Q
    ||||||||||||| || ||||  | || || |||||||||||||| ||||||| | ||||||||||||||||||||||||  |||| ||||||||| |||    
T  1267 tactccctccgtccctcaatacttcacctacttgaccatttcacacaaattaa-acaagtgtaaagatgaaagaaagagaatgatatttttactgaattg 1169  T
Q  141 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaagtatttataag 240  Q
    | ||||| ||||||||||||| ||  ||||||||||||||||||         ||||||||||||||||| |||||| || |||||||||||||||||||    
T  1168 ctcttgttattattttgaaacctt--cacttttaagtaatgatt---------gttccactacaaacttttacatggagaccacaaaaagtatttataag 1080  T
Q  241 gggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 288  Q
    |||||||| ||||||||  || ||| |||||||||||| |||||||||    
T  1079 gggtaaatttgtcaaatcctgcttaaaaatctgagaagctcaagtatt 1032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University