View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17241_low_4 (Length: 554)
Name: NF17241_low_4
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17241_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 433; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 13 - 542
Target Start/End: Complemental strand, 36463386 - 36462857
Alignment:
| Q |
13 |
aatatggcctcataattaaatgtttatcacctaagacactgatttgttctcaaatttaaatatagcttaagaaccgatgaagtatagatcaatatcatgg |
112 |
Q |
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| T |
36463386 |
aatatggcctcaaagttaaatgttgagcacctaagacactgatttgttctcaaatttaaatatagtttaagaactgatgaagtatagatcaatatcatgg |
36463287 |
T |
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| Q |
113 |
tcattacttccnnnnnnnnnnnnnnnnnnnnnnnaggtacctatagctgtaggagtaagttcatatgaggctgtgcttttatacaaagggaaaaaagtta |
212 |
Q |
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| T |
36463286 |
tcattacttcctttttttaatttcttgtttttttaggtacctatagctgtaggagtaagttcatatgaggctgtgcttttatacaaagggaaaaaagtta |
36463187 |
T |
|
| Q |
213 |
tagcttccaagggagatcaaggaataaattggagtgtgaagcagttaattctatattgttcatgtggcataattgctggcttaattggtggcttacttgg |
312 |
Q |
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| T |
36463186 |
tagcttccaagggagatcaaggaataaattggagtgtgaagcagttaattctatattgttcatgcggcataattgctggcttaattggtggcttacttgg |
36463087 |
T |
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| Q |
313 |
tcttggtggaggatttatcttagcgccactcttccttggacttggaatccctcctcaggtatctttattttatttcttctcttttccataatatacatat |
412 |
Q |
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| T |
36463086 |
tcttggtggaggatttatcttagcgccactcttccttggacttggaatccctcctcaggtatctttattttatttcttctcttttccataatatacatat |
36462987 |
T |
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| Q |
413 |
atatactaattaaatgagatttatgagagtatgtttgcaattctgattcgataattttctttgaaggtatcaagtgctacatccacttttgcaatgacat |
512 |
Q |
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| T |
36462986 |
atatactaattaaatgagatttatgagagtatgtttgcaattctgattcgataattttctttgaaggtatcaagtgctacatccacttttgcaatgacat |
36462887 |
T |
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| Q |
513 |
tttctgcatctatgtctgtggtggaatatt |
542 |
Q |
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| T |
36462886 |
tttctgcatctatgtctgtggtggaatatt |
36462857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 147 - 373
Target Start/End: Complemental strand, 36472402 - 36472176
Alignment:
| Q |
147 |
aggtacctatagctgtaggagtaagttcatatgaggctgtgcttttatacaaagggaaaaaagttatagcttccaagggagatcaaggaataaattggag |
246 |
Q |
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| T |
36472402 |
aggtacctatagctataggagtgagtggatatgaggctatacttttatacaaaggaaaaagagttatagcttccaatggagatcaaggaataaattggag |
36472303 |
T |
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| Q |
247 |
tgtgaagcagttaattctatattgttcatgtggcataattgctggcttaattggtggcttacttggtcttggtggaggatttatcttagcgccactcttc |
346 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||| |||||| ||| |
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| T |
36472302 |
tgtgaagcagttaattctatattgttcatgtggcataattgctggaataatcggtggcttgcttggtcttggtggaggatttatcttagggccacttttc |
36472203 |
T |
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| Q |
347 |
cttggacttggaatccctcctcaggta |
373 |
Q |
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| T |
36472202 |
attggacttggaatccctcctcaggta |
36472176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 465 - 542
Target Start/End: Complemental strand, 36472064 - 36471987
Alignment:
| Q |
465 |
aattttctttgaaggtatcaagtgctacatccacttttgcaatgacattttctgcatctatgtctgtggtggaatatt |
542 |
Q |
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|||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36472064 |
aattttctattaaggtggcaagtgctacatccacttttgcaatgacattttctgcatctatgtctgtggtggaatatt |
36471987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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