View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17241_low_41 (Length: 288)
Name: NF17241_low_41
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17241_low_41 |
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| [»] scaffold0004 (2 HSPs) |
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Alignment Details
Target: scaffold0004 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 82121 - 82000
Alignment:
| Q |
18 |
aatactagttatgtctcgatggaaattgagtctataggaaaagattatactcccaatgtgtgactaaccaatgtatgattttttggctgagagatgtatc |
117 |
Q |
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| T |
82121 |
aatactagttatgtctcgatggagattgagtctataggaaaagattatactcccaatgtgtgactaaccaatgtatgattttttggctgagagatgtatc |
82022 |
T |
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| Q |
118 |
caagtttattgtttgacgtgtt |
139 |
Q |
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| T |
82021 |
caagtttattgtttgacgtgtt |
82000 |
T |
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Target: scaffold0004; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 185 - 279
Target Start/End: Complemental strand, 81953 - 81859
Alignment:
| Q |
185 |
actaattatggttatggaactacaatattacttattgctttaattgatttttatgagcaggtgttgacaatgttacttatctcaagcatctctgc |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
81953 |
actaattatggttatggaactacaatattacttattgctttaattgatttttctgagcaggtgttgacaatgttacttatctcaagcatctctgc |
81859 |
T |
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