View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17241_low_43 (Length: 283)
Name: NF17241_low_43
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17241_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 13 - 269
Target Start/End: Original strand, 3862870 - 3863125
Alignment:
| Q |
13 |
aaggtggtctcgcctaactcaacaggctcgattaagtcagaaaactcaagaaaaattttataggtccaattccttgatatgaatgttaacagagtnnnnn |
112 |
Q |
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| T |
3862870 |
aaggtggtctcgcctaactcaataggctcgattaagtcagaaaactcaagaaattttttataggttcaattccttgatatgaatgttaacagagtaaaaa |
3862969 |
T |
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| Q |
113 |
nngcatcaaactacatactttgaatttctgagagtttcatgattaaaaggaatatggaaagaatcaatgaatatagcatcttatccaaccttacaaaagt |
212 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3862970 |
a-gcatcaaactaaatactttgaatttctgagagtttcatgattaaaaggaatatggaaagaatcaatgaatatagcatcttatccaaccttacaaaagt |
3863068 |
T |
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| Q |
213 |
tagaatgcattcttcaggttcttctaataggtgactctggaactgaaagatcaatct |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3863069 |
tagaatgcattcttcaggttcttctaataggtgactctggaactgaaagatcaatct |
3863125 |
T |
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