View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17241_low_47 (Length: 259)

Name: NF17241_low_47
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17241_low_47
NF17241_low_47
[»] chr8 (2 HSPs)
chr8 (145-253)||(38974345-38974453)
chr8 (145-253)||(39005443-39005551)
[»] chr4 (1 HSPs)
chr4 (145-253)||(5169735-5169843)
[»] chr3 (1 HSPs)
chr3 (145-253)||(39606177-39606285)
[»] chr1 (1 HSPs)
chr1 (145-228)||(13970542-13970625)


Alignment Details
Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 145 - 253
Target Start/End: Original strand, 38974345 - 38974453
Alignment:
Q  145 cttcggatttatgggttagaattttcagacctattttgagactcttttgcttttatgggtgagaagatgaatgtttgtgatttgtgatctgggttgttgt 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  38974345 cttcggatttatgggttagaattttcagacctattttgagactcttttgcttttatgggtgagaagatgaatgtttgtgatttgtgatttgggttgttgt 38974444  T
Q  245 tgatgatgt 253  Q
    |||||||||    
T  38974445 tgatgatgt 38974453  T

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Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 145 - 253
Target Start/End: Original strand, 39005443 - 39005551
Alignment:
Q  145 cttcggatttatgggttagaattttcagacctattttgagactcttttgcttttatgggtgagaagatgaatgtttgtgatttgtgatctgggttgttgt 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39005443 cttcggatttatgggttagaattttcagacctattttgagactcttttgcttttatgggtgagaagatgaatgtttgtgatttgtgatttgggttgttgt 39005542  T
Q  245 tgatgatgt 253  Q
    |||||||||    
T  39005543 tgatgatgt 39005551  T

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Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 145 - 253
Target Start/End: Complemental strand, 5169843 - 5169735
Alignment:
Q  145 cttcggatttatgggttagaattttcagacctattttgagactcttttgcttttatgggtgagaagatgaatgtttgtgatttgtgatctgggttgttgt 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  5169843 cttcggatttatgggttagaattttcagacctattttgagactcttttgcttttatgggtgagaagatgaatgtttgtgatttgtgatttgggatgttgt 5169744  T
Q  245 tgatgatgt 253  Q
    |||||||||    
T  5169743 tgatgatgt 5169735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 145 - 253
Target Start/End: Original strand, 39606177 - 39606285
Alignment:
Q  145 cttcggatttatgggttagaattttcagacctattttgagactcttttgcttttatgggtgagaagatgaatgtttgtgatttgtgatctgggttgttgt 244  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39606177 cttcggatttatgggttagaattttcagaactattttgagactcttttgcttttatgggtgagaagatgaatgtttgtgatttgtgatttgggttgttgt 39606276  T
Q  245 tgatgatgt 253  Q
    |||||||||    
T  39606277 tgatgatgt 39606285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 145 - 228
Target Start/End: Original strand, 13970542 - 13970625
Alignment:
Q  145 cttcggatttatgggttagaattttcagacctattttgagactcttttgcttttatgggtgagaagatgaatgtttgtgatttg 228  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13970542 cttcggatttatggattagaattttaagacctattttgagactcttttgcttttatgggtgagaagatgaatgtttgtgatttg 13970625  T

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