View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17241_low_48 (Length: 242)

Name: NF17241_low_48
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17241_low_48
NF17241_low_48
[»] chr2 (8 HSPs)
chr2 (1-235)||(32799700-32799928)
chr2 (1-235)||(32565469-32565697)
chr2 (1-235)||(32815091-32815319)
chr2 (1-228)||(32309138-32309359)
chr2 (1-235)||(32806654-32806882)
chr2 (95-223)||(28215713-28215838)
chr2 (160-223)||(28220448-28220511)
chr2 (95-180)||(28220274-28220356)
[»] chr6 (1 HSPs)
chr6 (54-230)||(301339-301507)


Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 32799928 - 32799700
Alignment:
Q  1 tattccttcctgttcttctctctctcagaaacccaagacaagaacctgaacttgaaccagaaaacaccataacacaaacaacttcatcttcttctttctc 100  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||      |||||||||||||||||||||||||||||||||||||||||||    
T  32799928 tattccttcctgttcttctctctctcagaaacccaagaggagaacctgaac------cagaaaacaccataacacaaacaacttcatcttcttctttctc 32799835  T
Q  101 tcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttgaatataatttctat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32799834 tcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataatttctat 32799735  T
Q  201 agggattcttgccctcaagctgaagatattcttcg 235  Q
    |||||||||||||||||||||||||||||| ||||    
T  32799734 agggattcttgccctcaagctgaagatattgttcg 32799700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 32565697 - 32565469
Alignment:
Q  1 tattccttcctgttcttctctctctcagaaacccaagacaagaacctgaacttgaaccagaaaacaccataacacaaacaacttcatcttcttctttctc 100  Q
    ||||||||||||||||| ||||||||||||||||||||  |||||||||||      |||||||||||||||||||||||||||||||||||||||||||    
T  32565697 tattccttcctgttcttgtctctctcagaaacccaagaggagaacctgaac------cagaaaacaccataacacaaacaacttcatcttcttctttctc 32565604  T
Q  101 tcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttgaatataatttctat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32565603 tcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataatttctat 32565504  T
Q  201 agggattcttgccctcaagctgaagatattcttcg 235  Q
    |||||||||||||||||||||||||||||| ||||    
T  32565503 agggattcttgccctcaagctgaagatattgttcg 32565469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 32815319 - 32815091
Alignment:
Q  1 tattccttcctgttcttctctctctcagaaacccaagacaagaacctgaacttgaaccagaaaacaccataacacaaacaacttcatcttcttctttctc 100  Q
    ||||||||||||||||| ||||||||||||||||||||  |||||||||||      |||||||||||||||||||||||||||||||||||||||||||    
T  32815319 tattccttcctgttcttgtctctctcagaaacccaagaggagaacctgaac------cagaaaacaccataacacaaacaacttcatcttcttctttctc 32815226  T
Q  101 tcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttgaatataatttctat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32815225 tcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataatttctat 32815126  T
Q  201 agggattcttgccctcaagctgaagatattcttcg 235  Q
    |||||||||||||||||||||||||||||| ||||    
T  32815125 agggattcttgccctcaagctgaagatattgttcg 32815091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 32309138 - 32309359
Alignment:
Q  1 tattccttcctgttcttctctctctcagaaacccaagacaagaacctgaacttgaaccagaaaacaccataacacaaacaacttcatcttcttctttctc 100  Q
    ||||||||||||||||| ||||||||||||||||||||  ||||||||||      ||||||||||||||||||||||||||||||||||||||||||||    
T  32309138 tattccttcctgttcttgtctctctcagaaacccaagaggagaacctgaa------ccagaaaacaccataacacaaacaacttcatcttcttctttctc 32309231  T
Q  101 tcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttgaatataatttctat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32309232 tcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataatttctat 32309331  T
Q  201 agggattcttgccctcaagctgaagata 228  Q
    ||||||||||||||||||||||||||||    
T  32309332 agggattcttgccctcaagctgaagata 32309359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 32806882 - 32806654
Alignment:
Q  1 tattccttcctgttcttctctctctcagaaacccaagacaagaacctgaacttgaaccagaaaacaccataacacaaacaacttcatcttcttctttctc 100  Q
    |||||||||||||||||| |||||||||||||||||||  |||| ||||||      |||||||||||||||||||||||| ||||||||||||||||||    
T  32806882 tattccttcctgttcttccctctctcagaaacccaagaggagaatctgaac------cagaaaacaccataacacaaacaatttcatcttcttctttctc 32806789  T
Q  101 tcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttgaatataatttctat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32806788 tcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataatttctat 32806689  T
Q  201 agggattcttgccctcaagctgaagatattcttcg 235  Q
    |||||||||||||||||||||||||||||| ||||    
T  32806688 agggattcttgccctcaagctgaagatattgttcg 32806654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 95 - 223
Target Start/End: Complemental strand, 28215838 - 28215713
Alignment:
Q  95 tttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttgaatataat 194  Q
    ||||| ||||||||||||||||||||| |  ||||| |    || |||||| |||||||||| | |||| |||||||||||||||||||||  |||||||    
T  28215838 tttctatcatacttcttttcgttcagtgaagttagctgg---tatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcgatataat 28215742  T
Q  195 ttctatagggattcttgccctcaagctga 223  Q
    ||||||| ||||||||||||| |||||||    
T  28215741 ttctataaggattcttgccctgaagctga 28215713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 160 - 223
Target Start/End: Original strand, 28220448 - 28220511
Alignment:
Q  160 aaagaatcagagatggttccaatcttgaatataatttctatagggattcttgccctcaagctga 223  Q
    |||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||    
T  28220448 aaagaatcagagatggttccaatcttcaatataatttctataaggtttcttgccctcaagctga 28220511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 95 - 180
Target Start/End: Original strand, 28220274 - 28220356
Alignment:
Q  95 tttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttcca 180  Q
    ||||| ||||||||||||||||||||| |  ||||| |    || |||||| ||||||||||||||||||||||||||||||||||    
T  28220274 tttctatcatacttcttttcgttcagtgaagttagctgg---tatttttccgtttgatttcaatcaaagaatcagagatggttcca 28220356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 54 - 230
Target Start/End: Original strand, 301339 - 301507
Alignment:
Q  54 gaaccagaaaacaccataacacaaacaacttcatcttcttctttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatt 153  Q
    ||||| ||||||||||||||||||||||||||||||||||   ||||||||||  ||||| |||||||||  |||||   ||||||||||||||||||||    
T  301339 gaacccgaaaacaccataacacaaacaacttcatcttctt---tctctcatac--cttttggttcagtcacgttagc---caatacttttccatttgatt 301430  T
Q  154 tcaatcaaagaatcagagatggttccaatcttgaatataatttctatagggattcttgccctcaagctgaagatatt 230  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  301431 tcaatcaaagaatcagagatggttccaatcttcaatataatttctatagggattctagccctcaagctgaagatatt 301507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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