View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17241_low_5 (Length: 539)

Name: NF17241_low_5
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17241_low_5
NF17241_low_5
[»] chr7 (18 HSPs)
chr7 (198-517)||(22831862-22832182)
chr7 (1-202)||(22835144-22835345)
chr7 (332-439)||(22816243-22816350)
chr7 (336-430)||(22886423-22886524)
chr7 (47-204)||(22886610-22886767)
chr7 (332-438)||(22810585-22810690)
chr7 (459-516)||(22894797-22894854)
chr7 (459-514)||(22841490-22841545)
chr7 (384-439)||(22843080-22843135)
chr7 (348-428)||(22843134-22843214)
chr7 (382-439)||(22874013-22874070)
chr7 (469-517)||(22843011-22843059)
chr7 (466-517)||(22810492-22810543)
chr7 (456-511)||(22859206-22859261)
chr7 (456-517)||(22816036-22816095)
chr7 (465-517)||(22806147-22806199)
chr7 (458-517)||(22886337-22886396)
chr7 (459-517)||(22899057-22899113)
[»] chr1 (3 HSPs)
chr1 (460-517)||(21149819-21149876)
chr1 (45-177)||(35877111-35877242)
chr1 (140-209)||(897241-897310)
[»] chr5 (1 HSPs)
chr5 (46-283)||(4523922-4524154)
[»] chr4 (1 HSPs)
chr4 (137-218)||(52934488-52934570)
[»] scaffold0533 (1 HSPs)
scaffold0533 (113-203)||(3152-3242)
[»] chr8 (1 HSPs)
chr8 (235-277)||(42447348-42447390)
[»] chr3 (1 HSPs)
chr3 (45-95)||(29675556-29675606)
[»] chr2 (1 HSPs)
chr2 (50-95)||(35984842-35984887)


Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 198 - 517
Target Start/End: Complemental strand, 22832182 - 22831862
Alignment:
Q  198 atagtattaataggggtatattagaaagaagaagaaaaataacaaatgcatttagtaatttgtagtgagtcttatatttaaggacatacattttctctta 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  22832182 atagtattaataggggtatattagaaagaagaagaaaaataacaaatgcatttagtaatttgtagtgagtcttgtatttaaggacatacattttctttta 22832083  T
Q  298 taaatcgtcttatatttagagatgaggtgactatgtcaaaacaaacatatatctttttatccttccaccacatattcattcatcatttgatttgcagcat 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22832082 taaatcgtcttatatttagagatgaggtgactatgtcaaaacaaacatatatctttttatccttccaccacatattcattcatcatttgatttgcagcat 22831983  T
Q  398 aatcaatagtaacttgtcaagtccacacattcaagtttgaaaaggnnnnnnnnnncac-tttaagaatttagacgacattgatgttttaatttcacacat 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||           ||| |||||||||||||||||||||||||||||||||||||||||    
T  22831982 aatcaatagtaacttgtcaagtccacacattcaagtttgaaaagaaaaaaaaaaacacttttaagaatttagacgacattgatgttttaatttcacacat 22831883  T
Q  497 tcaatttagcatcaaacactt 517  Q
    |||||||||||||||||||||    
T  22831882 tcaatttagcatcaaacactt 22831862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 22835345 - 22835144
Alignment:
Q  1 tcgaaatttcgcctcgatttttgcaagaagnnnnnnntttccttcgtccttttttataagaacactttacaaaagtcacgtgtattaagaaaagtctttg 100  Q
    ||||||||||||||||||||||||||||||       |||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  22835345 tcgaaatttcgcctcgatttttgcaagaagaaaaaaatttccttcatccttttttataagaacactttacaaaaatcacgtgtcttaagaaaagtctttg 22835246  T
Q  101 gagtaaattttttatctgaaatgtatgtatctgttgctaaattaccctttgtatataagtacattcaatgttattttgcattttctatgataaattgata 200  Q
    ||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  22835245 gagtaaaatttttatctgaaatgtatgtatctattgctatattaccctttgtatataagtacattcaatgttattttgcattttctatgataaatttata 22835146  T
Q  201 gt 202  Q
    ||    
T  22835145 gt 22835144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 332 - 439
Target Start/End: Complemental strand, 22816350 - 22816243
Alignment:
Q  332 gtcaaaacaaacatatatctttttatccttccaccacatattcattcatcatttgatttgcagcataatcaatagtaacttgtcaagtccacacattcaa 431  Q
    ||||||||  || |||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||   |||||| ||||||||||||    
T  22816350 gtcaaaacccacttatatctttttatccttccaccacgtattaattcatcattttatttgcagcataatcaatagtaataggtcaaggccacacattcaa 22816251  T
Q  432 gtttgaaa 439  Q
    || |||||    
T  22816250 gtgtgaaa 22816243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 336 - 430
Target Start/End: Complemental strand, 22886524 - 22886423
Alignment:
Q  336 aaacaaacatatatctttttatccttccaccacatattcattcatcatttgatttgcagcataatc-------aatagtaacttgtcaagtccacacatt 428  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||       |||||||||| ||||||||||||||||    
T  22886524 aaaccaacatatatctttttatctttccaccacatattcattcatcatttgatttgaagcataatcaataatcaatagtaactggtcaagtccacacatt 22886425  T
Q  429 ca 430  Q
    ||    
T  22886424 ca 22886423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 47 - 204
Target Start/End: Complemental strand, 22886767 - 22886610
Alignment:
Q  47 tccttttttataagaacactttacaaaagtcacgtgtattaagaaaagtctttggagtaaattttttatctgaaatgtatgtatctgttgctaaattacc 146  Q
    |||||||||| ||||||||||||||||| ||||| ||| ||| |||||||||| ||||||    ||| |||||||||| |||  || || ||||||||||    
T  22886767 tccttttttagaagaacactttacaaaaatcacgggtactaaaaaaagtctttcgagtaataaatttgtctgaaatgtgtgttactatttctaaattacc 22886668  T
Q  147 ctttgtatataagtacattcaatgttattttgcattttctatgataaattgatagtat 204  Q
    |||| |||| |||| ||||||| |||| ||| ||| ||||  ||||||||||||||||    
T  22886667 ctttttataaaagtgcattcaaagttaattttcatattcttagataaattgatagtat 22886610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 332 - 438
Target Start/End: Complemental strand, 22810690 - 22810585
Alignment:
Q  332 gtcaaaacaaacatatatctttttatccttccaccacatattcattcatcatttgatttgcagcataatcaatagtaacttgtcaagtccacacattcaa 431  Q
    |||||||| |||||||||||||| ||||||| ||||| |||||||| ||||||| |||||||||| ||||||||||||||  | |||| |||| ||||||    
T  22810690 gtcaaaaccaacatatatctttt-atccttcaaccacgtattcattaatcattttatttgcagcaaaatcaatagtaactgctaaagtgcacatattcaa 22810592  T
Q  432 gtttgaa 438  Q
    || ||||    
T  22810591 gtgtgaa 22810585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 459 - 516
Target Start/End: Complemental strand, 22894854 - 22894797
Alignment:
Q  459 aagaatttagacgacattgatgttttaatttcacacattcaatttagcatcaaacact 516  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22894854 aagaaattagacgacattgatgttttaatttcacatattcaatttagcatcaaacact 22894797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 459 - 514
Target Start/End: Complemental strand, 22841545 - 22841490
Alignment:
Q  459 aagaatttagacgacattgatgttttaatttcacacattcaatttagcatcaaaca 514  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22841545 aagaaattagacgacattgatgttttaatttcacatattcaatttagcatcaaaca 22841490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 384 - 439
Target Start/End: Complemental strand, 22843135 - 22843080
Alignment:
Q  384 ttgatttgcagcataatcaatagtaacttgtcaagtccacacattcaagtttgaaa 439  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  22843135 ttgatttgcagcataatcaatagtaactggtcaagtccacacattcaagtgtgaaa 22843080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 348 - 428
Target Start/End: Complemental strand, 22843214 - 22843134
Alignment:
Q  348 atctttttatccttccaccacatattcattcatcatttgatttgcagcataatcaatagtaacttgtcaagtccacacatt 428  Q
    ||||||||||| |||||| || |||||||||||||||| |||||||||||||||||| |||||  | ||| ||||||||||    
T  22843214 atctttttatctttccacaacgtattcattcatcattttatttgcagcataatcaatggtaaccggccaattccacacatt 22843134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 382 - 439
Target Start/End: Complemental strand, 22874070 - 22874013
Alignment:
Q  382 atttgatttgcagcataatcaatagtaacttgtcaagtccacacattcaagtttgaaa 439  Q
    |||| |||| |||||||||||||||||||  ||||||||||||||||||||| |||||    
T  22874070 attttatttacagcataatcaatagtaaccggtcaagtccacacattcaagtgtgaaa 22874013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 469 - 517
Target Start/End: Complemental strand, 22843059 - 22843011
Alignment:
Q  469 acgacattgatgttttaatttcacacattcaatttagcatcaaacactt 517  Q
    ||||||| |||||||| |||||||| |||||||||||||||||||||||    
T  22843059 acgacatagatgttttgatttcacatattcaatttagcatcaaacactt 22843011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 466 - 517
Target Start/End: Complemental strand, 22810543 - 22810492
Alignment:
Q  466 tagacgacattgatgttttaatttcacacattcaatttagcatcaaacactt 517  Q
    |||||||| |||||| |||||||||||| ||||||||||||||| |||||||    
T  22810543 tagacgactttgatgatttaatttcacatattcaatttagcatcgaacactt 22810492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 456 - 511
Target Start/End: Complemental strand, 22859261 - 22859206
Alignment:
Q  456 tttaagaatttagacgacattgatgttttaatttcacacattcaatttagcatcaa 511  Q
    |||||||| |||||| ||||| |||||||||||||||| ||||||||| |||||||    
T  22859261 tttaagaaattagacaacattaatgttttaatttcacatattcaattttgcatcaa 22859206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 456 - 517
Target Start/End: Complemental strand, 22816095 - 22816036
Alignment:
Q  456 tttaagaatttagacgacattgatgttttaatttcacacattcaatttagcatcaaacactt 517  Q
    |||||||| ||||| |||| ||||||||||||||  || |||||||||||||||||||||||    
T  22816095 tttaagaaattagatgacactgatgttttaattt--catattcaatttagcatcaaacactt 22816036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 465 - 517
Target Start/End: Complemental strand, 22806199 - 22806147
Alignment:
Q  465 ttagacgacattgatgttttaatttcacacattcaatttagcatcaaacactt 517  Q
    |||||| ||| |||||| || |||||||| |||||||||||||||||||||||    
T  22806199 ttagacaacactgatgtcttgatttcacatattcaatttagcatcaaacactt 22806147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 517
Target Start/End: Complemental strand, 22886396 - 22886337
Alignment:
Q  458 taagaatttagacgacattgatgttttaatttcacacattcaatttagcatcaaacactt 517  Q
    |||||| |||||  ||||||||  || ||||||||| |||||||||||||||||||||||    
T  22886396 taagaaattagaacacattgataattaaatttcacatattcaatttagcatcaaacactt 22886337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 517
Target Start/End: Complemental strand, 22899113 - 22899057
Alignment:
Q  459 aagaatttagacgacattgatgttttaatttcacacattcaatttagcatcaaacactt 517  Q
    |||||| |||| ||||||||||||| ||||||||| ||||||||||| |||||||||||    
T  22899113 aagaatatagatgacattgatgttt-aatttcacatattcaatttag-atcaaacactt 22899057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 460 - 517
Target Start/End: Original strand, 21149819 - 21149876
Alignment:
Q  460 agaatttagacgacattgatgttttaatttcacacattcaatttagcatcaaacactt 517  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21149819 agaaattagacgacattgatgttttaatttcacatattcaatttagcatcaaacactt 21149876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 177
Target Start/End: Complemental strand, 35877242 - 35877111
Alignment:
Q  45 cgtccttttttataagaacactttacaaaagtcacgtgtattaagaaaagtctttggagtaaattttttatctgaaatgtatgtatctgttgctaaatta 144  Q
    ||||| |||||||||||||||||||||||| | ||  ||||||| ||||||   |||||| |    ||| ||| |||||| | || || || ||| ||||    
T  35877242 cgtccctttttataagaacactttacaaaaat-acaggtattaataaaagttgctggagtgataaatttgtctaaaatgtgtataactattactagatta 35877144  T
Q  145 ccctttgtatataagtacattcaatgttatttt 177  Q
    |||||||||||||| ||||||||||||||||||    
T  35877143 ccctttgtatataaatacattcaatgttatttt 35877111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 897241 - 897310
Alignment:
Q  140 aattaccctttgtatataagtacattcaatgttattttgcattttctatgataaattgatagtattaata 209  Q
    |||||| ||||||| |||| |||||| ||||||| ||| ||| ||| | ||||||| |||||||||||||    
T  897241 aattactctttgtacataaatacatttaatgttacttttcatattccaagataaatagatagtattaata 897310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 46 - 283
Target Start/End: Complemental strand, 4524154 - 4523922
Alignment:
Q  46 gtccttttttataagaacactttacaaaagtcacgtgtattaagaaaagtctttggagtaaattttttatctgaaatgtatgtatctgttgctaaattac 145  Q
    |||| |||| ||||||||||| || ||||  |||| ||||||||||||||  |||||||||    ||| |||||||||| |||  || || ||||||||     
T  4524154 gtcccttttaataagaacactctaaaaaaaacacgggtattaagaaaagttgttggagtaataaatttgtctgaaatgtgtgtgactattactaaattat 4524055  T
Q  146 cctttgtatataagtacattcaatgttattttgcattttctatgataaattgatagtattaat-aggggtatattagaaagaagaagaaaaataacaaat 244  Q
    |||||||| |||| | |||||||| ||| ||  ||| ||| | ||||| | ||| |||||||| ||||||||| | |      ||| || | | | ||||    
T  4524054 cctttgtagataaatgcattcaatattacttatcatattccaagataattagatggtattaataaggggtataattg------gaaaaagagtgataaat 4523961  T
Q  245 gcatttagtaatttgtagtgagtcttatatttaaggaca 283  Q
    |||| ||||||||||||| |||||||||||||| |||||    
T  4523960 gcatctagtaatttgtagcgagtcttatatttagggaca 4523922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 52934488 - 52934570
Alignment:
Q  137 ctaaattaccctttgtatataagtacattcaatgttattttgcattttctatgataaattgatagtattaat-aggggtatat 218  Q
    |||||||| ||||||| ||||| |||||||||||||| ||| ||| ||| | ||| ||||||| |||||||| ||||||||||    
T  52934488 ctaaattatcctttgtttataaatacattcaatgttacttttcatattccaagatgaattgattgtattaataaggggtatat 52934570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0533 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 203
Target Start/End: Original strand, 3152 - 3242
Alignment:
Q  113 tatctgaaatgtatgtatctgttgctaaattaccctttgtatataagtacattcaatgttattttgcattttctatgataaattgatagta 203  Q
    |||||||||||||||  |||||| |||||||| | ||||| ||||| || ||| ||||||||||| ||| ||  | |||||||| ||||||    
T  3152 tatctgaaatgtatgcgtctgttactaaattatcatttgtgtataaatatatttaatgttatttttcatatttcaagataaattaatagta 3242  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 277
Target Start/End: Complemental strand, 42447390 - 42447348
Alignment:
Q  235 aataacaaatgcatttagtaatttgtagtgagtcttatattta 277  Q
    ||||| |||||||| |||||||||||| |||||||||||||||    
T  42447390 aataataaatgcatctagtaatttgtaatgagtcttatattta 42447348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 29675556 - 29675606
Alignment:
Q  45 cgtccttttttataagaacactttacaaaagtcacgtgtattaagaaaagt 95  Q
    ||||| |||||||||||  ||||||||||| ||||| ||||||||||||||    
T  29675556 cgtccctttttataagattactttacaaaaatcacgagtattaagaaaagt 29675606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 35984842 - 35984887
Alignment:
Q  50 ttttttataagaacactttacaaaagtcacgtgtattaagaaaagt 95  Q
    |||||||| |||||||||||||||| ||||| ||||||||| ||||    
T  35984842 ttttttattagaacactttacaaaaatcacgggtattaagataagt 35984887  T

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