View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17241_low_52 (Length: 237)
Name: NF17241_low_52
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17241_low_52 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 256792 - 256573
Alignment:
| Q |
1 |
cttatgatatgtgataggtaaaaagaatgaagacaatttctgaatgcatgttaatattagtttgtcactagggagagtttggtagctcatttggtttgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
256792 |
cttatgatatgtgataggtaaaaagaatgaagacaatttctgaatgcatgttaatattagtttgtcactagggagagtttggtagctcatttggtttgag |
256693 |
T |
|
| Q |
101 |
ccaagagttaaaagggttaaaggagttggaggtgttcaaactcggacgaaggagtaaaattaatctaataactaacatttgtcattgnnnnnnnnagttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
256692 |
ccaagagttaaaagggttaaaggagttggaggtgttcaaagtcggacgaaggagtaaaattaatctaataactaacatttgtcattgttttttttagttt |
256593 |
T |
|
| Q |
201 |
gtcggtaattacttagtata |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
256592 |
gtcggtaattacttagtata |
256573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 186
Target Start/End: Original strand, 7367612 - 7367692
Alignment:
| Q |
112 |
aagggttaaaggagttggaggt-----gttcaaactcggacgaaggagtaaa-attaatctaataactaacatttgtcatt |
186 |
Q |
| |
|
|||||||||||||||||||||| |||||||| | |||||||||||||| |||||||||| |||||| |||| |||| |
|
|
| T |
7367612 |
aagggttaaaggagttggaggtcttgggttcaaacaccgacgaaggagtaaatattaatctaactactaacgtttggcatt |
7367692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 186
Target Start/End: Complemental strand, 10541247 - 10541196
Alignment:
| Q |
135 |
ttcaaactcggacgaaggagtaaaattaatctaataactaacatttgtcatt |
186 |
Q |
| |
|
||||||| ||||||||| ||||| |||||||||| || |||||||||||||| |
|
|
| T |
10541247 |
ttcaaacccggacgaagaagtaatattaatctaacaattaacatttgtcatt |
10541196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University