View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17241_low_54 (Length: 233)
Name: NF17241_low_54
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17241_low_54 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 7418459 - 7418658
Alignment:
| Q |
19 |
gagtgaaactgttgttgctgctgctgattttgttgctgcaacgacgtgagttgttgctgccgttcgcggcgtttagcagctggaacccaagtacttttca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7418459 |
gagtgaaactgttgttgctgctgctgattttgttgctgcaacgacgtgagttgttgctgccgttcgcggcgtttagcagctggaacccaagtacttttca |
7418558 |
T |
|
| Q |
119 |
catgagtttgacactgaaaccctcgactcttgcaacaagttctacatctaagatgtggacaatctttcttagcttggttaccacaatcttgacagttcat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7418559 |
catgagtttgacactgaaaccctcgactcttgcaacaagttctacatctaagatgtggacaatctttcttagcttggttaccacaatcttgacagttcat |
7418658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 70 - 212
Target Start/End: Complemental strand, 32483108 - 32482966
Alignment:
| Q |
70 |
tgttgctgccgttcgcggcgtttagcagctggaacccaagtacttttcacatgagtttgacactgaaaccctcgactcttgcaacaagttctacatctaa |
169 |
Q |
| |
|
||||| || ||||| |||||| ||| ||| ||||||||||| ||||| |||||||||||||||||||| || |||||||| ||||||||||||||||| | |
|
|
| T |
32483108 |
tgttgttgacgttcacggcgtctagaagcaggaacccaagtgcttttaacatgagtttgacactgaaaaccacgactcttacaacaagttctacatctca |
32483009 |
T |
|
| Q |
170 |
gatgtggacaatctttcttagcttggttaccacaatcttgaca |
212 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32483008 |
tgtgaggacaatctttcttagcttggttaccacaatcttgaca |
32482966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 70 - 218
Target Start/End: Original strand, 52767556 - 52767704
Alignment:
| Q |
70 |
tgttgctgccgttcgcggcgtttagcagctggaacccaagtacttttcacatgagtttgacactgaaaccctcgactcttgcaacaagttctacatctaa |
169 |
Q |
| |
|
||||| || ||||| |||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||| || ||||||||||| ||||| | |
|
|
| T |
52767556 |
tgttgttgtcgttcacggcgtttagcagcgggaacccaagtactcttaacatgtgtttgacactgaaaccctcgacttttacaacaagttctgcatctta |
52767655 |
T |
|
| Q |
170 |
gatgtggacaatctttcttagcttggttaccacaatcttgacagttcat |
218 |
Q |
| |
|
||||| |||||||||||| |||||||||||||| || ||||| ||||| |
|
|
| T |
52767656 |
gatgtatacaatctttctttgcttggttaccacagtcctgacaattcat |
52767704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 92 - 212
Target Start/End: Complemental strand, 8102002 - 8101882
Alignment:
| Q |
92 |
tagcagctggaacccaagtacttttcacatgagtttgacactgaaaccctcgactcttgcaacaagttctacatctaagatgtggacaatctttcttagc |
191 |
Q |
| |
|
||||||| |||||||||||||| || |||||||||||||| | ||| |||| |||||| ||||||||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
8102002 |
tagcagcaggaacccaagtactcttaacatgagtttgacaatcaaaacctctactcttacaacaagttctacatctcatatgaggacaatctttcttagc |
8101903 |
T |
|
| Q |
192 |
ttggttaccacaatcttgaca |
212 |
Q |
| |
|
||| || |||||||||||||| |
|
|
| T |
8101902 |
ttgattcccacaatcttgaca |
8101882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University