View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17241_low_6 (Length: 531)
Name: NF17241_low_6
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17241_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 289
Target Start/End: Complemental strand, 4228289 - 4228011
Alignment:
| Q |
13 |
attattctccaaatttaaaaatgatttcttctattaaaactaaattattataggaaagacaacatgacaaacggtgtgtccatgataacatagtgggtat |
112 |
Q |
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| T |
4228289 |
attattctccaaatttaaaaatgatttcttctattaaaactaaattattataggaaagacaacatgacaaacggtgtgtccatgataacatagtgggtat |
4228190 |
T |
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| Q |
113 |
ctcgtggatttgactaatctggtgcctcgtaattgtccttgtttgcaatttgtgtaaaagaaatttggtgcaacatatataagattgtgccataacacga |
212 |
Q |
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| T |
4228189 |
ctcgtggatttgactaatctggtgcctcgtaattgtccttgtttgcaatttgtgtaaaagaaatttggtgcaacatctataagattgtgccataacacga |
4228090 |
T |
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| Q |
213 |
gggacataatggagta--nnnnnnnnagatggacggatttattaaaaactgacacacataagaagtcgagttcgaactc |
289 |
Q |
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| T |
4228089 |
gggacataatggagtatttttttggtagatggacgaatttattaaaaactgacacacataagaagtcgagttcgaactc |
4228011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 372 - 513
Target Start/End: Complemental strand, 4227928 - 4227787
Alignment:
| Q |
372 |
catgtagatatagtgcattatgattttgatcttagaaagttttgttttctttcttttggctctacaaagnnnnnnnnnnnnnnnnnnnntgtttttgcct |
471 |
Q |
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| T |
4227928 |
catgtagaaatagtgcattatgattttgatcttagaaagttttgttttctttcttttctctctacaaagtaaaaataaaataaaataattgtttttgcct |
4227829 |
T |
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| Q |
472 |
caactttggttgcaaaaacaccaatgtggttaagagaatgct |
513 |
Q |
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| T |
4227828 |
caactttggttgcaaaaacaccgatgtggttaagagaatgct |
4227787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 61 - 135
Target Start/End: Original strand, 41264682 - 41264755
Alignment:
| Q |
61 |
tataggaaagacaacatgacaaacggtgtgtccatgataacatagtgggtatctcgtggatttgactaatctggt |
135 |
Q |
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| T |
41264682 |
tataggaaagataatatgacaaatagtgcgtccatgata-catagtgggtatctaatgaatttgactaatttggt |
41264755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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