View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17241_low_7 (Length: 522)
Name: NF17241_low_7
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17241_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 13 - 423
Target Start/End: Original strand, 3044325 - 3044741
Alignment:
| Q |
13 |
gaaaggggttatgtagatgattgtttctaatttttgggtgaaggaactttgtattactcatgacccttttaccttgagagtgtggatttgaaaaaagagg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3044325 |
gaaaggggttatgtagatgattgtttctaatttttgggtgaaggaactttgtattactcatgacccttttaccttgagagtgtggatttgaaaaaagagg |
3044424 |
T |
|
| Q |
113 |
ttgcttcattgatgcataacaaacaagggtattgttaaagacatgtttgttcattcaaaggtgatgtgaggaatattatggatttaacttaaaggtatgg |
212 |
Q |
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| T |
3044425 |
ttgcttcattgatgcataacaaacaagggtattgttaaagacatgtttgttcattcaaaggtgatgtgaggaatattatggatttaacttaaaggtatgg |
3044524 |
T |
|
| Q |
213 |
ttgtgtgaaaattactgt------tgttactgttactgctgctagttgattaatatgtcatattgaagttgaagaaatttgctcattgataataggatgc |
306 |
Q |
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| T |
3044525 |
ttgtgtgaaaattactgttgttactgttactgttactgctgctatttgattaatatgtcatattgaagttgaagaaatttgctcattgataataggatgc |
3044624 |
T |
|
| Q |
307 |
ttatagttcactccacccggactcaattatataagtaaaagtaactaattaaacatatattaagaaaaatggttaatttcatttaattttcttgatgtaa |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3044625 |
ttatagttcactccacccggactcaattatataagtaaaagtaactaattaaacatatattaagaaaaatggttaatttcatttaattttcttgatgtaa |
3044724 |
T |
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| Q |
407 |
tcaaaatactaattgtg |
423 |
Q |
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| T |
3044725 |
tcaaaatactaactgtg |
3044741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 340 - 404
Target Start/End: Complemental strand, 17557274 - 17557212
Alignment:
| Q |
340 |
agtaaaagtaactaattaaacatatattaagaaaaatggttaatttcatttaattttcttgatgt |
404 |
Q |
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| T |
17557274 |
agtaaaaataactaattacacagat--taagaaaagtgattaatttcatttaattttcttgatgt |
17557212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 474 - 506
Target Start/End: Original strand, 3044792 - 3044824
Alignment:
| Q |
474 |
ggaacatgccattgtgtaccatgatggggtttc |
506 |
Q |
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| T |
3044792 |
ggaacatgccattgtgtaccatgatggggtttc |
3044824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 316 - 421
Target Start/End: Complemental strand, 36404037 - 36403934
Alignment:
| Q |
316 |
actccacccggactcaattatataagtaaaagtaactaattaaacatatattaagaaaaatggttaatttcatttaattttcttgatgtaatcaaaatac |
415 |
Q |
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|||||| |||||||| |||||| || |||| |||||||||| ||||| ||||||| |||| ||||| || |||||||||||||||||||| |||| | |
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| T |
36404037 |
actccatccggactccattata--agcaaaaataactaattacacatagattaagataaatagttaacctcgtttaattttcttgatgtaattaaaaaaa |
36403940 |
T |
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| Q |
416 |
taattg |
421 |
Q |
| |
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|||||| |
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| T |
36403939 |
taattg |
36403934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 412
Target Start/End: Complemental strand, 5713152 - 5713076
Alignment:
| Q |
336 |
tataagtaaaagtaactaattaaacatatattaagaaaaatggttaatttcatttaattttcttgatgtaatcaaaa |
412 |
Q |
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||||||||||||||||| | || | | ||||| |||| ||||||||||| ||||||||||||| || ||||||||| |
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| T |
5713152 |
tataagtaaaagtaacttactacataaatattgagaataatggttaattccatttaattttctcaatataatcaaaa |
5713076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 379
Target Start/End: Complemental strand, 37958645 - 37958609
Alignment:
| Q |
343 |
aaaagtaactaattaaacatatattaagaaaaatggt |
379 |
Q |
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|||| |||||||||||||| ||||||||||||||||| |
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| T |
37958645 |
aaaaataactaattaaacacatattaagaaaaatggt |
37958609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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