View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17241_low_8 (Length: 512)
Name: NF17241_low_8
Description: NF17241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17241_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 6 - 345
Target Start/End: Original strand, 476312 - 476672
Alignment:
| Q |
6 |
aggagcagagactgtacattcagaacaagatatcactttgtgtcaaagacagtattttctatatttattaactaagacaaataacttggtcttcaagcca |
105 |
Q |
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| T |
476312 |
aggaacagaaactgtacattcagaacaagatatcactttgtgtcaaagacagtattttctatatttattaactaagacaaataacttggtcttcaagcca |
476411 |
T |
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| Q |
106 |
tccagttttcccaatagatcctattcaaggattacacaatgatgatactgaagaatatattgagcctttgctggcaagttatttgacatccataaggcca |
205 |
Q |
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| T |
476412 |
tccagttttcccaatagatcctattcaaggattacacaatgatgatactgaagaatatattgagcctttgttggcaagttatttgacatccataaggcca |
476511 |
T |
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| Q |
206 |
gatata---------------------agtcaatttctagattcaccaacctcagcacacttccctagtttgttcttttctcgtagctcttcactcgata |
284 |
Q |
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| T |
476512 |
gatataatattccttgtgcaacaagtcagtcaatttctagattcaccaacctcagcacacttccctagtttgttcttttctcgtagctcttcactcgata |
476611 |
T |
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| Q |
285 |
tacttggatttagtgatgtagataggggtggtttctcagatactatcacaggatattgctt |
345 |
Q |
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| T |
476612 |
tacttggatttagtgatgtagataggggtggtttatcagatactatcacaggatattgctt |
476672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 366 - 494
Target Start/End: Original strand, 476772 - 476900
Alignment:
| Q |
366 |
ttagttatctatctactcacagattttcaattgaaatgcactaaaatccagcactatattctgataatcaaaattatttgcatattgcctccaatcataa |
465 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
476772 |
ttagttatctatctacttacagattttcaattgaaatgcactaaaatccagcactatattctgatagtcaaaattctttgcatattgcctccaatcataa |
476871 |
T |
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| Q |
466 |
gaagttgctaggaggactgatgaggttgc |
494 |
Q |
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| T |
476872 |
gaagttgctaggaggactgatgaggttgc |
476900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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