View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17242_high_1 (Length: 344)
Name: NF17242_high_1
Description: NF17242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17242_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 29 - 253
Target Start/End: Complemental strand, 43301874 - 43301648
Alignment:
| Q |
29 |
ataagaacccctgaatatatggtgacaagtaaaacatatgccatgagcagaatgtgctatgcagcctgtgcttacaaatgcaacttctgagcagaaatgc |
128 |
Q |
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| T |
43301874 |
ataagaacccctgaatatatggtgacaagtaaaacatatgccatgagcagaatgtgctatgcagcctgtgcttacaaatgcaacttctgagcagaattgc |
43301775 |
T |
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| Q |
129 |
acttccaaatgcaatccctaaaacaactatccgatctaaccaatatatacaatc--acactaatacaacagcacttgaaataaatatatttacaagctta |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43301774 |
acttccaaatgcaatccctaaaacaactatccgatctaaccaatatatacaatcacacactaatacaacagcacttgaaataaatatatttacaagctta |
43301675 |
T |
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| Q |
227 |
gcactaaaaataatgcaacggcgtctt |
253 |
Q |
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|||||||||||||||||||||| |||| |
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| T |
43301674 |
gcactaaaaataatgcaacggcatctt |
43301648 |
T |
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