View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17242_high_3 (Length: 266)
Name: NF17242_high_3
Description: NF17242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17242_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 2875928 - 2875692
Alignment:
| Q |
13 |
cagagacagagccaacaaataacttcaaactatgcatcaaaataattgatcaatgttttcttgttaaacacagttgtaatgattaaaagaatgccaagat |
112 |
Q |
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| T |
2875928 |
cagagacagagccaacaaataacttcaaactatgcatcaaaataattgatcaatgttttcttgttaaacacagttgtaatgattaaaagaatgccaagat |
2875829 |
T |
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| Q |
113 |
agtatagtgacttttatctcttacaacaacactgattcatttgcaataagattttttgtctgagaaactagcacaataagctgcttatcaattgtgatct |
212 |
Q |
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| T |
2875828 |
agtatagtgacttttatctcttacaacaacactgattcatttgcaataagattttttgtctgagaaactagcacaataagctgcttatcaattgtgatct |
2875729 |
T |
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| Q |
213 |
agcataacctaaccctgcctgttgtatagaaattcat |
249 |
Q |
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| T |
2875728 |
agcataacctaaccctgcctgttgtatagaaattcat |
2875692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 2858393 - 2858325
Alignment:
| Q |
68 |
ttttcttgttaaacacagttgtaatgattaaaagaatgccaagatagtatagtgacttttatctcttac |
136 |
Q |
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| T |
2858393 |
ttttctagttaaacacaattgtaataattaaaagaatggtaagatagaacagtgaattttatctcttac |
2858325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 2847046 - 2847011
Alignment:
| Q |
21 |
gagccaacaaataacttcaaactatgcatcaaaata |
56 |
Q |
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| T |
2847046 |
gagccaacaattaacttcaaactatgcatcaaaata |
2847011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 2858883 - 2858848
Alignment:
| Q |
21 |
gagccaacaaataacttcaaactatgcatcaaaata |
56 |
Q |
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| T |
2858883 |
gagccaacaattaacttcaaactatgcatcaaaata |
2858848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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