View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17242_low_3 (Length: 286)
Name: NF17242_low_3
Description: NF17242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17242_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 48569265 - 48569141
Alignment:
| Q |
18 |
gatcctgaatggtcttcattaggctgaacaaccatatgggccattggagcatttccaacaaaataggtattggagagatctcctatgactgatttcaatg |
117 |
Q |
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| T |
48569265 |
gatcctgaatggtcttcattaggctgaacaaccatatgggccattggagcatttccaaccaaaaaggtattggagagatctcctatgactgatttcaatg |
48569166 |
T |
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| Q |
118 |
cagactcagcacactgcaagatttc |
142 |
Q |
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| T |
48569165 |
cagactcagcacactgcaagatttc |
48569141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 201 - 273
Target Start/End: Complemental strand, 48569090 - 48569018
Alignment:
| Q |
201 |
ccacaatgaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtt |
273 |
Q |
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| T |
48569090 |
ccacaatgaatgttcaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtt |
48569018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 10821831 - 10821937
Alignment:
| Q |
30 |
tcttcattaggctgaacaaccatatgggccattggagcatttccaacaaaataggtattggagagatctcctatgactgatttcaatgcagactcagcac |
129 |
Q |
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| T |
10821831 |
tcttctttaggctgaacaaccgtatgggccatcggagcatttccgacaaaatatgtattcgaaagatctcctaagactgatttcaaggcagattctgcac |
10821930 |
T |
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| Q |
130 |
actgcaa |
136 |
Q |
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| T |
10821931 |
actgcaa |
10821937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 30 - 136
Target Start/End: Complemental strand, 36145555 - 36145449
Alignment:
| Q |
30 |
tcttcattaggctgaacaaccatatgggccattggagcatttccaacaaaataggtattggagagatctcctatgactgatttcaatgcagactcagcac |
129 |
Q |
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| T |
36145555 |
tcttctttaggctgaacaacaatatgggccatcggagcatttccgacaaaatatgtatttgaaagatctcccaagactgatttcaaggcagattctgcac |
36145456 |
T |
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| Q |
130 |
actgcaa |
136 |
Q |
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||||||| |
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| T |
36145455 |
actgcaa |
36145449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 271
Target Start/End: Original strand, 10822202 - 10822265
Alignment:
| Q |
208 |
gaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacagg |
271 |
Q |
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| T |
10822202 |
gaatgttcaccttacgcatagtttcctctgattcatatactttttctggaaaatgccacacagg |
10822265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 271
Target Start/End: Complemental strand, 36145194 - 36145131
Alignment:
| Q |
208 |
gaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacagg |
271 |
Q |
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| T |
36145194 |
gaatgttcaccttacgcatggtatcctctgattcatatactttttctggaaaatgccacacagg |
36145131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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