View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17243_high_11 (Length: 230)
Name: NF17243_high_11
Description: NF17243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17243_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 18785788 - 18785986
Alignment:
| Q |
17 |
ataatattatcattaactaaaaatttggagaatacaaaattgttattacctttgttatgttttaggaaatgcatattgatggctaagatgttccttatca |
116 |
Q |
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| T |
18785788 |
ataatattatcattaactaaaaatttggagaatacaaaattgttattacctttgttatgttttaggaaatgcatattgatggctaagatgttccttatca |
18785887 |
T |
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| Q |
117 |
tctcaatgacattggtttgcataatgaaattgaaatcttgagcattgagttctaaagctccatttttacatgtttcaatatttgtgagagaagttgtga |
215 |
Q |
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| T |
18785888 |
tctcaatgacattggtttgcataatgaaattgaaatcttgagcattgagttctaaagctccacttttacatgtttcaatatttgtgagagaagttgtga |
18785986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 55 - 215
Target Start/End: Original strand, 1624885 - 1625045
Alignment:
| Q |
55 |
attgttattacctttgttatgttttaggaaatgcatattgatggctaagatgttccttatcatctcaatgacattggtttgcataatgaaattgaaatct |
154 |
Q |
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| T |
1624885 |
attgttaatacctttgttatgtttcagaaaatgcatattgatggctaagatgttccttatcatctcaatgacattggtttgcataatgaaattgaaatct |
1624984 |
T |
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| Q |
155 |
tgagcattgagttctaaagctccatttttacatgtttcaatatttgtgagagaagttgtga |
215 |
Q |
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| T |
1624985 |
tgagcattgagttctaaagctccacttttacatgtttcaatatttgtgagagaagttgtga |
1625045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 55 - 213
Target Start/End: Original strand, 1607878 - 1608036
Alignment:
| Q |
55 |
attgttattacctttgttatgttttaggaaatgcatattgatggctaagatgttccttatcatctcaatgacattggtttgcataatgaaattgaaatct |
154 |
Q |
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| T |
1607878 |
attgttagtacctttgctatgtttcaggaaatgcatattgatggctaagatgttccttatcatttcagtgacattggtttgcataatgaaatcgaaatct |
1607977 |
T |
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| Q |
155 |
tgagcattgagttctaaagctccatttttacatgtttcaatatttgtgagagaagttgt |
213 |
Q |
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| T |
1607978 |
tgagcattgagttctaaagctccacttttacatgtttcaatatttgtgagagaagttgt |
1608036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 55 - 213
Target Start/End: Original strand, 1631368 - 1631526
Alignment:
| Q |
55 |
attgttattacctttgttatgttttaggaaatgcatattgatggctaagatgttccttatcatctcaatgacattggtttgcataatgaaattgaaatct |
154 |
Q |
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||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||| |
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| T |
1631368 |
attgttagtacctttgctatgtttcaggaaatgcatattgatggctaagatgttccttatcatttcagtgacattggtttgcataatgaaatcgaaatct |
1631467 |
T |
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| Q |
155 |
tgagcattgagttctaaagctccatttttacatgtttcaatatttgtgagagaagttgt |
213 |
Q |
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| T |
1631468 |
tgagcattgagttctaaagctccacttttacatgtttcaatatttgtgagagaagttgt |
1631526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 55 - 215
Target Start/End: Complemental strand, 10819174 - 10819014
Alignment:
| Q |
55 |
attgttattacctttgttatgttttaggaaatgcatattgatggctaagatgttccttatcatctcaatgacattggtttgcataatgaaattgaaatct |
154 |
Q |
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||||||| ||||| | ||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
10819174 |
attgttagtacctgttttatgattcaggaaatgcatattgatggctaagatgttccttatcatctcagtgacattggcttgcataatgaaattgaaatct |
10819075 |
T |
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| Q |
155 |
tgagcattgagttctaaagctccatttttacatgtttcaatatttgtgagagaagttgtga |
215 |
Q |
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| T |
10819074 |
tgagcattgagttctaaagctccacttttacatgtttcaatatttgtgagagaagttgtga |
10819014 |
T |
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