View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17243_high_13 (Length: 228)
Name: NF17243_high_13
Description: NF17243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17243_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 39562384 - 39562190
Alignment:
| Q |
15 |
agcagagacacagactatattactgtaagcttgatgagtggtaggaaaattttgcaatgttttctaataatagttaatgtacattatcacaactagtgag |
114 |
Q |
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| T |
39562384 |
agcagagacacagactatattactgtaagcttgatgagtggtaggaaaattttgcaatgttttctaataataattaatgtacattatcacaactagtgag |
39562285 |
T |
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| Q |
115 |
tttaattagataagaatgccaactgagggttctagttttattcatggctgccaattgaggccagcattcaagaattttagtcagtacaaaaacct |
209 |
Q |
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| T |
39562284 |
tttaattagataagaatgccaactgagggttctagttttattgatggctgccaattgaggccagcattcaagaactttagtcagtacaaaaacct |
39562190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 55 - 209
Target Start/End: Complemental strand, 39572532 - 39572380
Alignment:
| Q |
55 |
gtaggaaaattttgcaatgttttctaataatagttaatgtacattatcacaactagtgagtttaattagataagaatgccaactgagggttctagtttta |
154 |
Q |
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| T |
39572532 |
gtaggaaaattttgcaatgttttctaataataattaatgtacattatcacaactagtgagtttaattagataagaatgccaactgagggttctagtttta |
39572433 |
T |
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| Q |
155 |
ttcatggctgccaattgaggccagcattcaagaattttagtcagtacaaaaacct |
209 |
Q |
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| T |
39572432 |
ttgatgg-tg-tagtggaagccagcattcaagggttttagttagtacaaaaacct |
39572380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 39567060 - 39566869
Alignment:
| Q |
16 |
gcagagacacagactatattactgtaagcttgatgagtggtaggaaaattttgca-atgttttctaataatagttaatgtacattatcacaacta-gtga |
113 |
Q |
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| T |
39567060 |
gcagagacacagactatatatttgtaagcttaatgagtggtaggaaaattccgtacatgttttcaaa--ataat-aatgtacattattacaactaagtga |
39566964 |
T |
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| Q |
114 |
gtttaattagataagaatgccaactgagggttctagttttattcatggctgccaattgaggccagcattcaagaattttagtcagtacaaaaacct |
209 |
Q |
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| T |
39566963 |
gtttaatcagataaaaatgccaactgagg-ttctagctttattgatggctgtcaattgataccagcattcaagaattttagtcagtacaaaaacct |
39566869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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