View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17243_high_14 (Length: 227)
Name: NF17243_high_14
Description: NF17243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17243_high_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 25 - 209
Target Start/End: Original strand, 46861861 - 46862041
Alignment:
| Q |
25 |
ctttcatgggaggatttattatcgaacaaatttcgaaatcctttaatgtgagaagtacaacaaattacttacttcctcctacaaaatatgattaaaa-ac |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
46861861 |
ctttcatgggaggatttattatcgaacaaatttcgaaatcctttaatgtgagaagtacaacaaattacttacttcctcctacaaaatatgattaaattac |
46861960 |
T |
|
| Q |
124 |
taacggaaaacatcttcattttgaaattgacaactatacatagtaaaattttgaaactacatcaattcaatagtctagtaaataat |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
46861961 |
taacggaaaacatcttcattttgaaattgacaactttgcatagtaaaattttgaaactacatcaa-----tagtctagtaaataat |
46862041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University