View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17243_high_6 (Length: 448)
Name: NF17243_high_6
Description: NF17243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17243_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 11 - 434
Target Start/End: Complemental strand, 49272435 - 49272012
Alignment:
| Q |
11 |
caaaggaagggatgaagtgtgttgtttaatttgttgttgaagagattcaatgtacaaggttgttgcctctgcaaatgtatataggtatcaactctagaag |
110 |
Q |
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| T |
49272435 |
caaaggaagggatgaagtttgttgtttaatttgttgttgaagagattgaatgtacaaggatgttgcctctgcaaatgtatataggtatcaaatcttgaag |
49272336 |
T |
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| Q |
111 |
ttaatttcttgaaatgtcaa-gtgtttgtagtaacccgtta-gaacccaattttggtggtagtgtaccaccgaatgaattgatgaaaacaatgaaattgg |
208 |
Q |
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| T |
49272335 |
ttaatttcttgaaatgtcaaagtgtttgtagtaacccgttaagaacccaattttggtggtagtgtaccaccgaatgaattgatgaaaacaatgaaattgg |
49272236 |
T |
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| Q |
209 |
taagttttggaagctcaccaatccttttgtgatatcagtgggacatataaataaacacaaacacactaacaaagaggaacggaacagaggagaagagaat |
308 |
Q |
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| T |
49272235 |
taagttttggaagctcaccaatccttttgtgatatcggtgggacatataaataaacacaaacacactaacaaagaggaacggaacagaggagaagagaat |
49272136 |
T |
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| Q |
309 |
ttctttaactcaatatttcaatttccctattcttaaagggatttggcctcttaagcgcgattctttaaaagaagcaatgtgtcacgccaggtcaagtttg |
408 |
Q |
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| T |
49272135 |
ttctttaactcaatatttcaatttccctattcttaaagggatttggcctcttaa--gcgattctttaaaagaagcaatatgtcacgcctggtcaagtttg |
49272038 |
T |
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| Q |
409 |
ataaatcacgccaaaaatgttgttgt |
434 |
Q |
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| T |
49272037 |
ataaatcacgccaaaaatgttgttgt |
49272012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 230
Target Start/End: Complemental strand, 13225263 - 13225168
Alignment:
| Q |
135 |
ttgtagtaacccgttagaacccaattttggtggtagtgtaccaccgaatgaattgatgaaaacaatgaaattggtaagttttggaagctcaccaat |
230 |
Q |
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| T |
13225263 |
ttgtagtaacccgttagaaccgagttttggtggtaatgcaccggtgaatgagttgttgaaaatatggaaagtgttgagttttggaaggtcaccaat |
13225168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 13315104 - 13315200
Alignment:
| Q |
134 |
tttgtagtaacccgttagaacccaattttggtggtagtgtaccaccgaatgaattgatgaaaacaatgaaattggtaagttttggaagctcaccaat |
230 |
Q |
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| T |
13315104 |
tttgtagcaacccgttggaaccgagtttcgggggtagtctaccaatgagtgaattgttgaaaacttggaaagtgttgagttttggaagctcaccaat |
13315200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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