View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17243_high_8 (Length: 307)

Name: NF17243_high_8
Description: NF17243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17243_high_8
NF17243_high_8
[»] scaffold0425 (2 HSPs)
scaffold0425 (111-297)||(4398-4576)
scaffold0425 (104-160)||(3826-3882)
[»] chr7 (3 HSPs)
chr7 (104-289)||(325520-325697)
chr7 (135-237)||(34853249-34853351)
chr7 (105-160)||(325329-325384)
[»] chr2 (2 HSPs)
chr2 (185-297)||(6852535-6852647)
chr2 (104-152)||(35214584-35214632)
[»] chr4 (3 HSPs)
chr4 (20-103)||(38539036-38539111)
chr4 (138-237)||(31911573-31911672)
chr4 (104-152)||(50656957-50657005)
[»] chr3 (1 HSPs)
chr3 (104-152)||(42423227-42423275)


Alignment Details
Target: scaffold0425 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 111 - 297
Target Start/End: Complemental strand, 4576 - 4398
Alignment:
Q  111 tttcacataggacacttgataatcttcccaccatgggaaagtcactttttaccgccacctgtgagtgaaacaggttttattaattttgtttgttttttca 210  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||         |||||||||||||||||||||||||||||||    
T  4576 tttcacataggacacttgataatcttcccaccatgagaaagtcactttttaccgccacctc--------acaggttttattaattttgtttgttttttca 4485  T
Q  211 aaaggaaaaagaatgcactatctaataatcttaatatatttcttttgattaatatcatttccttcttctctcttttgatcattcatc 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4484 aaaggaaaaagaatgcactatctaataatcttaatatatttcttttgattaatatcatttccttcttctctcttttgatcattcatc 4398  T

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Target: scaffold0425; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 3826 - 3882
Alignment:
Q  104 ggtggcatttcacataggacacttgataatcttcccaccatgggaaagtcacttttt 160  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||    
T  3826 ggtggcatttcacatgggacacttgaaaatcttcccaccatgggaaagtcacatttt 3882  T

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Target: chr7 (Bit Score: 121; Significance: 5e-62; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 104 - 289
Target Start/End: Complemental strand, 325697 - 325520
Alignment:
Q  104 ggtggcatttcacataggacacttgataatcttcccaccatgggaaagtcactttttaccgccacctgtgagtgaaacaggttttattaattttgtttgt 203  Q
    |||||||||| |||| ||||| |||| || ||||||||||||||||| ||||||||||||||||||||||||        |||||||||||||||||||     
T  325697 ggtggcatttaacatgggacatttgaaaaccttcccaccatgggaaaatcactttttaccgccacctgtgag--------gttttattaattttgtttgg 325606  T
Q  204 tttttcaaaaggaaaaagaatgcactatctaataatcttaatatatttcttttgattaatatcatttccttcttctctcttttgat 289  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  325605 tttttcaaaaggaaaaagaatgcaatatctaataatcgtaatatatttcttttgattaatatcatttccttcttctctcttttgat 325520  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 135 - 237
Target Start/End: Complemental strand, 34853351 - 34853249
Alignment:
Q  135 ttcccaccatgggaaagtcactttttaccgccacctgtgagtgaaacaggttttattaattttgtttgttttttcaaaaggaaaaagaatgcactatcta 234  Q
    |||||||||| |||||||  |||||||| ||||| ||| |||||||| ||||| | || ||||||||||||||||||||| |||||||||||| ||| ||    
T  34853351 ttcccaccataggaaagttgctttttactgccacttgtaagtgaaaccggtttcactatttttgtttgttttttcaaaagaaaaaagaatgcagtattta 34853252  T
Q  235 ata 237  Q
    |||    
T  34853251 ata 34853249  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 160
Target Start/End: Original strand, 325329 - 325384
Alignment:
Q  105 gtggcatttcacataggacacttgataatcttcccaccatgggaaagtcacttttt 160  Q
    ||||||||| |||| |||||||||| |||||||||||||| | |||||||| ||||    
T  325329 gtggcatttaacatgggacacttgaaaatcttcccaccatagaaaagtcacatttt 325384  T

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Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 6852647 - 6852535
Alignment:
Q  185 ttttattaattttgtttgttttttcaaaaggaaaaagaatgcactatctaataatcttaatatatttcttttgattaatatcatttccttcttctctctt 284  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6852647 ttttattaattttgtttgttttttcaaaagggaaaagaatgcaatatctaataatcttaatatatttcttttgattaatatcatttccttcttctctctt 6852548  T
Q  285 ttgatcattcatc 297  Q
    |||||||||||||    
T  6852547 ttgatcattcatc 6852535  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 35214584 - 35214632
Alignment:
Q  104 ggtggcatttcacataggacacttgataatcttcccaccatgggaaagt 152  Q
    |||| ||||| ||||  ||||||||| ||||||||||||||||||||||    
T  35214584 ggtgacatttaacatgagacacttgaaaatcttcccaccatgggaaagt 35214632  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 38539111 - 38539036
Alignment:
Q  20 aatatgatgatcaataacgggccttgttgtttaggaatactgcaggaagccaggaacaacagaaaggtacaaggcatactatac 103  Q
    ||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||    
T  38539111 aatatgatgatcaataacgggccttgttgtttaggaatactg--------taggaacaacagaaaggtacaaggcatactatac 38539036  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 237
Target Start/End: Original strand, 31911573 - 31911672
Alignment:
Q  138 ccaccatgggaaagtcactttttaccgccacctgtgagtgaaacaggttttattaattttgtttgttttttcaaaaggaaaaagaatgcactatctaata 237  Q
    ||||||||| |||||  ||||||||  |||| ||| |||||||| ||||| | || |||||||||||||||||||||||||||||||||| ||| |||||    
T  31911573 ccaccatggaaaagttgctttttactaccacttgtaagtgaaaccggtttcactatttttgtttgttttttcaaaaggaaaaagaatgcagtatttaata 31911672  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 50656957 - 50657005
Alignment:
Q  104 ggtggcatttcacataggacacttgataatcttcccaccatgggaaagt 152  Q
    ||||| |||||||||  ||||||||| |||||||||||||||| |||||    
T  50656957 ggtggtatttcacatgagacacttgaaaatcttcccaccatggaaaagt 50657005  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 42423275 - 42423227
Alignment:
Q  104 ggtggcatttcacataggacacttgataatcttcccaccatgggaaagt 152  Q
    |||||||||||||||  ||||||||| ||||||||||||||||||||||    
T  42423275 ggtggcatttcacatgagacacttgaaaatcttcccaccatgggaaagt 42423227  T

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