View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17243_high_9 (Length: 306)
Name: NF17243_high_9
Description: NF17243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17243_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 177 - 281
Target Start/End: Original strand, 19197196 - 19197300
Alignment:
| Q |
177 |
atagcatcatttattgttttagtattaatgatgtctaagagctattgatagaattatgtacaaccacttagatctttgcttctaaaactcctggatattt |
276 |
Q |
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| T |
19197196 |
atagcatcatttattgttttagtattaatgatgactaagagctattgatagaactatgtacaaccacttagatctttgcttctaaaactactggatattt |
19197295 |
T |
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| Q |
277 |
gtcaa |
281 |
Q |
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| T |
19197296 |
gtcaa |
19197300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 179 - 277
Target Start/End: Original strand, 19201281 - 19201379
Alignment:
| Q |
179 |
agcatcatttattgttttagtattaatgatgtctaagagctattgatagaattatgtacaaccacttagatctttgcttctaaaactcctggatatttg |
277 |
Q |
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| T |
19201281 |
agcatcatgtattgtttgagcataaatgatgagtaagagctatagatagaactatgtacaagcacttagatctttgcctctcaaactccttgatgtttg |
19201379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 157
Target Start/End: Complemental strand, 13460789 - 13460657
Alignment:
| Q |
28 |
taagggtattttgataataatgttcaattaatattttggaaagaaccattaaaaagaaattctgaagnnnnnnnnnnnnaaaataataataatgacat-- |
125 |
Q |
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| T |
13460789 |
taagggtattttggtaataatattcaattaatattttggaaagaaccattaaacagaaattttgaagtttttttaaaaaaaaataataataatgacgtgg |
13460690 |
T |
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| Q |
126 |
-ggcagtgccacgtaatgacgtgtcagtgccac |
157 |
Q |
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| T |
13460689 |
cggcagtgccacgtaatgacgtgtcagtgccac |
13460657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 14913658 - 14913611
Alignment:
| Q |
46 |
aatgttcaattaatattttggaaagaaccattaaaaagaaattctgaag |
94 |
Q |
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| T |
14913658 |
aatgttcaattaattttttggaaa-aaacattaaatagaaattctgaag |
14913611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 7346925 - 7346878
Alignment:
| Q |
46 |
aatgttcaattaatattttggaaagaaccattaaaaagaaattctgaag |
94 |
Q |
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| T |
7346925 |
aatgttcaattaattttttggaaa-aaacattaaatagaaattctgaag |
7346878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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