View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17243_low_3 (Length: 606)
Name: NF17243_low_3
Description: NF17243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17243_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 580
Target Start/End: Original strand, 29647052 - 29647639
Alignment:
| Q |
1 |
atttattggagaacccatcaaaaactatagccagcaactcttattaccgatt-----acagggattgtagtc-gagttgtcggttcatgcaatggattgc |
94 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
29647052 |
atttattggagaacccataaaaaactatagccagcaactcttattaccgattggagtatagggattgtagtctgagttgtcggttcatgcaatagattgc |
29647151 |
T |
|
| Q |
95 |
tttgtttgctcggttattcttacacaagtaatcatattcaggagaaaacaatcttctggttccatatctggaacccggctacaaggataatatccaaaaa |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29647152 |
tttgtttgctcggttattcttacacaagtaatcatattcagaagaaaacaatcttctggttccatatctggaacccggctacaaggataatatccaaaaa |
29647251 |
T |
|
| Q |
195 |
attaggaacttgtcaccaaccttgcaggccaggcaagctcactttttccttcgggtatgataattcaactagaacttataatgttgtggttttgtgttct |
294 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29647252 |
attaggaacttgtcaccaaccttgcagaccaggcaagctcactttttccttcgggtatgataattcaactagaacttataatgccgtggttttgtgttct |
29647351 |
T |
|
| Q |
295 |
agtgaggtgaaagttttcggattcaatgataatatttggagaaaaattgcaagttttactccttataaccttgttgacactcttggctatagttatgtga |
394 |
Q |
| |
|
|||||||||||||||||| | ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| ||||| ||||| |
|
|
| T |
29647352 |
agtgaggtgaaagttttccgtttcggtgataatatttggagaaaaattgcaag-tttactccttataaccttgttgatacccttggccatagtgttgtga |
29647450 |
T |
|
| Q |
395 |
ac---caaggagtgcatttgagtggcactattagctggatttccttttatccaaaggatgttactgttgagaaatttgtgattatctcgcttgatcttgc |
491 |
Q |
| |
|
|| ||||||||| |||||||||||||| ||| ||||||||| ||||||| ||||||||||| |||| ||||||| |||||||||||||||| ||| |
|
|
| T |
29647451 |
accaacaaggagtgtatttgagtggcactgttaattggatttccatttatccggaggatgttactcttgataaatttgcgattatctcgcttgatattgg |
29647550 |
T |
|
| Q |
492 |
tactgagacatacaagaaatcgctaccccctcctggagcagttaattcagtgtcaccatatattgaaccaattattgctgttttgatgg |
580 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||| |||||||| |
|
|
| T |
29647551 |
taccgagacatacaagaaactgctaccccctcctggagcagttaatttagtgccaccatatattgaaccaactattgctactttgatgg |
29647639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 590
Target Start/End: Complemental strand, 29598237 - 29597649
Alignment:
| Q |
1 |
atttattggagaacccatcaaaaactatagccagcaactcttattaccgatt-----acagggattgtagtcgagttgtcggttcatgcaatggattgct |
95 |
Q |
| |
|
|||||||||||||||| || ||| || |||| ||||||||| |||||||| ||| ||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
29598237 |
atttattggagaacccgtcggtaaccatcgccaccaactcttactaccgattggagtacaaggattgtagccgagttgttggttcatgcaatggattgct |
29598138 |
T |
|
| Q |
96 |
ttgtttgctcggttattcttacacaagtaatcatattcaggagaaaacaatcttctggttccatatctggaacccggctacaaggataatatccaaaaaa |
195 |
Q |
| |
|
||||||||| |||||||||||| ||| |||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29598137 |
ttgtttgcttggttattcttacctaaggaatcat------gatgaaacagtcttctggttccatatctggaacccggctacaaggataatatccaaaaaa |
29598044 |
T |
|
| Q |
196 |
ttaggaacttgtcaccaaccttgcaggccaggcaagctcactttttccttcgggtatgataattcaactagaacttataatgttgtggttttgtgttcta |
295 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29598043 |
ttaggaacttgtcaccaaccttgcagaccaggcaagctaactttttccttcgggtatgatatttcaactagaacttataatgctgtggttttgtgttcta |
29597944 |
T |
|
| Q |
296 |
gtgaggtgaaagttttcggattcaatgataatatttggagaaaaattgcaagttttactccttataaccttgttgacactcttggctatagttatgtgaa |
395 |
Q |
| |
|
| ||||||||||||||| | ||| ||||||||||||||||||||||| |||||||||||||||||||||| |||| || ||||||| |||||||||||| |
|
|
| T |
29597943 |
gggaggtgaaagttttccgtttcggtgataatatttggagaaaaattgtaagttttactccttataaccttcttgatacccttggctgtagttatgtgaa |
29597844 |
T |
|
| Q |
396 |
ccaaggagtgcatttgagtggcactattagctggatttccttttatccaaaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctact |
495 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29597843 |
ccaaggagtgcatttgagtggcactgttaactggatatccatttatctgaaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctact |
29597744 |
T |
|
| Q |
496 |
gagacatacaagaaatcgctaccccctcctggagcagttaattcagtgtcaccatatattgaaccaattattgctgttttgatggtccgcctttg |
590 |
Q |
| |
|
|||||||||| ||||| | | ||||||||||| || ||||||| |||||||| ||||| |||||||| ||||||||||||| ||| ||||||||| |
|
|
| T |
29597743 |
gagacatacaggaaattgttgccccctcctggtgctgttaatttagtgtcacgatatactgaaccaactattgctgttttgctggaccgcctttg |
29597649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 5 - 570
Target Start/End: Original strand, 29641739 - 29642312
Alignment:
| Q |
5 |
attggagaacccatcaaaaactatagccagcaactcttattaccgatt-----acagggattgtagtcgagttgtcggttcatgcaatggattgctttgt |
99 |
Q |
| |
|
|||||||||||||||| || || || ||||||||||| |||||||| ||| |||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
29641739 |
attggagaacccatcagtaagcatcgctagcaactcttactaccgattggagtacaaggattgtatccgagttgttggttcatgcaatggattgctttgt |
29641838 |
T |
|
| Q |
100 |
ttgctcggttattcttacacaagtaatcatattcaggagaaaacaatcttctggttccatatctggaacccggctacaaggataatatccaaaaaattag |
199 |
Q |
| |
|
||||| |||||||||||| |||||||||||| |||||| |||||||||||||||||| |||||||||||| || |||||||||||||| ||||||||| |
|
|
| T |
29641839 |
ttgcttggttattcttactcaagtaatcataatcaggatgaaacaatcttctggttccgtatctggaacccagccacaaggataatatcggaaaaattag |
29641938 |
T |
|
| Q |
200 |
gaacttgtcaccaaccttgcaggccaggcaagctcactttttccttcgggtatgataattcaactagaacttataatgttgtggttttgtgttctagtga |
299 |
Q |
| |
|
||||||||||||||||||||| | |||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
29641939 |
gaacttgtcaccaaccttgcaatttattcaagctcagtttttcattcgggtatgataattcaactagaacttataatgcggtggttttgtgtactagtga |
29642038 |
T |
|
| Q |
300 |
ggtgaaagttttcggattcaatgataatatttggagaaaaattgcaagttttactccttataaccttgttgacactcttggctatagttatgtgaac--- |
396 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||| || | ||||||| |
|
|
| T |
29642039 |
ggtgaaagttttccatttcggtgataatatttggagaaaaattgcaaattttactccttataaccttgttgatacccttggccatgatggtgtgaaccaa |
29642138 |
T |
|
| Q |
397 |
caaggagtgcatttgagtggcactattagctggatttccttttatccaaaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactg |
496 |
Q |
| |
|
||||||||| |||||||||||||| ||| ||||||||| ||||||| ||||||||||| |||| ||||||| |||||||||||||||||||| ||| | |
|
|
| T |
29642139 |
caaggagtgtatttgagtggcactgttaattggatttccatttatccggaggatgttactcttgataaatttgcgattatctcgcttgatcttggtaccg |
29642238 |
T |
|
| Q |
497 |
agacatacaagaaatcgctaccccctcctggagcagttaattcagtgtcaccatatattgaaccaattattgct |
570 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||| ||||||||| |||||||| ||||||| |
|
|
| T |
29642239 |
agacatacaagaaactgctaccccctcctggagcagttaatttagtgccaccatatactgaaccaactattgct |
29642312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 71 - 196
Target Start/End: Complemental strand, 29821222 - 29821097
Alignment:
| Q |
71 |
ttgtcggttcatgcaatggattgctttgtttgctcggttattcttacacaagtaatcatattcaggagaaaacaatcttctggttccatatctggaaccc |
170 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||| |||| |||||||||||||| ||||||||||| |
|
|
| T |
29821222 |
ttgttggttcatgcaatggattgctttgtttgctcagttattcttacacaagtaatcataatcgggatgaaacgatcttctggttccagatctggaaccc |
29821123 |
T |
|
| Q |
171 |
ggctacaaggataatatccaaaaaat |
196 |
Q |
| |
|
|| || ||||||||||||||||||| |
|
|
| T |
29821122 |
agccactaggataatatccaaaaaat |
29821097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 42297559 - 42297604
Alignment:
| Q |
71 |
ttgtcggttcatgcaatggattgctttgtttgctcggttattctta |
116 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
42297559 |
ttgttggttcatgcaatggattgatttgtttgctcggttattctta |
42297604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 247 - 419
Target Start/End: Complemental strand, 19326431 - 19326262
Alignment:
| Q |
247 |
gggtatgataattcaactagaacttataatgttgtggttttgtgttctagtgaggtgaaagttttcggattcaatgataatatttggagaaaaattgcaa |
346 |
Q |
| |
|
|||||||||||||||||| |||||||||| || ||| | ||| ||||||||||||||||||||||| | || | |||||||||||||||||||||| ||| |
|
|
| T |
19326431 |
gggtatgataattcaactggaacttataaggtggtgctcttgagttctagtgaggtgaaagttttcagtttgagtgataatatttggagaaaaatttcaa |
19326332 |
T |
|
| Q |
347 |
gttttactccttataaccttgttgacactcttggctatagttatgtgaaccaaggagtgcatttgagtggcac |
419 |
Q |
| |
|
| ||| |||||| | ||| || || |||||||||| |||| | |||| |||||||| ||||||||||||| |
|
|
| T |
19326331 |
gctttcctccttttgaccatgctgttactcttggctttagtaa---gaacgaaggagtgtatttgagtggcac |
19326262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 445 - 507
Target Start/End: Complemental strand, 19344811 - 19344749
Alignment:
| Q |
445 |
aaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
507 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
19344811 |
aaggatattactgttgggaaatttgtgattatctcccttgatcttggtaccgagacatacaag |
19344749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 452 - 507
Target Start/End: Original strand, 19374608 - 19374663
Alignment:
| Q |
452 |
ttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
507 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
19374608 |
ttactgttgggaaatttgtgattatctcccttgatcttggtaccgagacatacaag |
19374663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 507
Target Start/End: Complemental strand, 19326221 - 19326159
Alignment:
| Q |
445 |
aaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
507 |
Q |
| |
|
|||||| |||| || ||| ||||| |||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
19326221 |
aaggatattaccgtcgagcaatttatgattatctcccttgatcttggtactgagacatacaag |
19326159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 456 - 507
Target Start/End: Original strand, 26256620 - 26256671
Alignment:
| Q |
456 |
tgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
507 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||| | || |||||||||||| |
|
|
| T |
26256620 |
tgttgagcaatttgtgattatttcgcttgatctttcaacggagacatacaag |
26256671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 21219330 - 21219281
Alignment:
| Q |
69 |
agttgtcggttcatgcaatggattgctttgtttgctcggttattcttaca |
118 |
Q |
| |
|
|||||| ||||| |||||||||||| | ||||||| |||||||||||||| |
|
|
| T |
21219330 |
agttgttggttcctgcaatggattggtctgtttgcgcggttattcttaca |
21219281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 18515490 - 18515446
Alignment:
| Q |
71 |
ttgtcggttcatgcaatggattgctttgtttgctcggttattctt |
115 |
Q |
| |
|
|||| |||||||||||||||||| | ||||||||||||| ||||| |
|
|
| T |
18515490 |
ttgttggttcatgcaatggattggtctgtttgctcggttgttctt |
18515446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 247 - 358
Target Start/End: Complemental strand, 24254881 - 24254770
Alignment:
| Q |
247 |
gggtatgataattcaactagaacttataatgttgtggttttgtgttctagtgaggtgaaagttttcggattcaatgataatatttggagaaaaattgcaa |
346 |
Q |
| |
|
|||||||||||||||||| |||||||||| || ||| | | |||| |||| | ||||||||||| | || || ||||||||||||||||||||| ||| |
|
|
| T |
24254881 |
gggtatgataattcaactggaacttataaggtggtgttcatatgttatagtaaactgaaagttttcagtttgaaggataatatttggagaaaaatttcaa |
24254782 |
T |
|
| Q |
347 |
gttttactcctt |
358 |
Q |
| |
|
| ||| |||||| |
|
|
| T |
24254781 |
ggtttcctcctt |
24254770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 507
Target Start/End: Complemental strand, 24254662 - 24254600
Alignment:
| Q |
445 |
aaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
507 |
Q |
| |
|
|||||| |||| |||||| |||| |||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
24254662 |
aaggatattaccgttgagcaattcatgattatctcccttgatcttggtactgagacatacaag |
24254600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 19356933 - 19356978
Alignment:
| Q |
70 |
gttgtcggttcatgcaatggattgctttgtttgctcggttattctt |
115 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
19356933 |
gttgttggttcttgcaatggattgctttgtttgcttggttattctt |
19356978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 76 - 117
Target Start/End: Original strand, 35766437 - 35766478
Alignment:
| Q |
76 |
ggttcatgcaatggattgctttgtttgctcggttattcttac |
117 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
35766437 |
ggttcatgcaatggatggctttgtttgcttggttattcttac |
35766478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 10206010 - 10205965
Alignment:
| Q |
70 |
gttgtcggttcatgcaatggattgctttgtttgctcggttattctt |
115 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||| |||||| |
|
|
| T |
10206010 |
gttgtcggttcctgcaatggattgctatgtttgctcggtcattctt |
10205965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 15960673 - 15960721
Alignment:
| Q |
71 |
ttgtcggttcatgcaatggattgctttgtttgctcggttattcttacac |
119 |
Q |
| |
|
|||| ||||| ||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
15960673 |
ttgttggttcttgcaatggattgctttgcttgctcggccattcttacac |
15960721 |
T |
|
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