View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17243_low_4 (Length: 540)
Name: NF17243_low_4
Description: NF17243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17243_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Complemental strand, 4094288 - 4093767
Alignment:
| Q |
1 |
aactaaaagtggaacctagttgatgtacacatgcaagagttgtcttaactcttcttaaccttgcaatttttagacaaaatcacacaaaatatcttaccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4094288 |
aactaaaagtggaacctagttgatgtacacatgcaagagttgtcttaactcttcttaaccttgcaatttttagacaaagtcacacaaaatatcttaccaa |
4094189 |
T |
|
| Q |
101 |
cttgatccatattatggacactcttgttgtgattaaggcgctgattctttatccacatacatacatatttattgaaattgttaatgtattgcttaaaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4094188 |
cttgatccatattatggacactcttgttgtgattaaggtgctgattctttatccacctacatacatatttattgaaattgttaatgtattgcttaaaaca |
4094089 |
T |
|
| Q |
201 |
attactgtcatgtcttctcagaatgatgaaatggttattggatggccacttggtcttagcttcttgaatatcagacttagagttgtggaagcttcttcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4094088 |
attactgtcatgtcttctcagaatgatgaaatggttattggatggccacttggtcttagcttcttgaatatcagacttagagttgtggaagcttcttcaa |
4093989 |
T |
|
| Q |
301 |
tgaaaccatatcaattgcacatgccatccactagtttctcttcattttcaacctctaaccttgatactgaggtgttgtgttcttattcctttctcaactt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4093988 |
tgaaaccatatcaattgcacatgccatccactagtttctcttcattttcaacctctaaccttgatactgaggtgttgtgttcttattcctttctcaactt |
4093889 |
T |
|
| Q |
401 |
tggttctacataatgctcattgccataaaatgaatagtgaataccacttagtaacataaacactatttgttgataacattaaagatttagtttcacctcc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4093888 |
tggttctacataatgctcattgccataaaatgaatagtgaataccacttagtaacataaacactatttgttgataacattaaagatttagtttcacctcc |
4093789 |
T |
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| Q |
501 |
aactgtccaaggcaaaggtact |
522 |
Q |
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|||||||||||||||| ||||| |
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| T |
4093788 |
aactgtccaaggcaaatgtact |
4093767 |
T |
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