View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17243_low_5 (Length: 464)
Name: NF17243_low_5
Description: NF17243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17243_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 129 - 446
Target Start/End: Complemental strand, 33628614 - 33628296
Alignment:
| Q |
129 |
tgaatgatagattttatcaaatctaaacaaaactgaattttaaaaaatctagtacaaatataagaaatagtacatataatgtttcaaaaaatacatcaat |
228 |
Q |
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| T |
33628614 |
tgaattatagattttatcaaatctaaacaaaactgaattttaaaaaatctagtacaaatataagaaatagtacatataatgtttcaaaaaatacatcaac |
33628515 |
T |
|
| Q |
229 |
aatttttctttcaattttgcatgcaaacttcatggatgatttccttctccgtcttctcctttaacaaaccgataccaaaaccaatgtttaccccatatga |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33628514 |
aatttttctttcaattttgcatgcaaacttcatggatgatttccttctccgtcttctcctttaacaaaccgataccaaaaccaatgtttaccccatatga |
33628415 |
T |
|
| Q |
329 |
tgtgcattgaatccaaagcaattcctttagtctccggc-nnnnnnntataatgaaaagagtcatcacaacaacccaaccagcatagaacaaaaatgcccc |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33628414 |
tgtgcattgaatccaaagcaattcctttagtctccggcaaaaaaaatataatgaaaagagtcatcacaacaacccaaccagcatagaacaaaaatgcccc |
33628315 |
T |
|
| Q |
428 |
aaacttcaagtggcataac |
446 |
Q |
| |
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||||||||||||||||||| |
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| T |
33628314 |
aaacttcaagtggcataac |
33628296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 8 - 279
Target Start/End: Complemental strand, 33624831 - 33624556
Alignment:
| Q |
8 |
cattcttattgcattgtggtgttaa----atatacactcacacatgctaattaacttgctaaaaactctcaattattaacaaacttcttaactaactttt |
103 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
33624831 |
cattctaattgcattgtggtgttaagcttatatacactcacacattctaattaacttgctaaaaactctcaattattaacacacttcttaactaaccttt |
33624732 |
T |
|
| Q |
104 |
aacacaagtgaactcctaacaactatgaatgatagattttatcaaatctaaacaaaactgaatt-ttaaaaaatctagtacaaatataagaaatagtaca |
202 |
Q |
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|||||||||||||||||||||||||||||| |||||||| ||||||||||| ||| | ||| || | ||||||| ||| || ||||||||||||||| | |
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| T |
33624731 |
aacacaagtgaactcctaacaactatgaattatagatttcatcaaatctaagcaacattgacttctgaaaaaatatagcactaatataagaaatagt--a |
33624634 |
T |
|
| Q |
203 |
tataatgtttcaaaaaatacatcaata-atttttctttcaattttgcatgcaaacttcatggatgatttccttctccg |
279 |
Q |
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|||| | ||||||| |||| ||||| | ||||||||||| |||| || ||||||||||||| |||||||||||||| |
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| T |
33624633 |
tatattttttcaaagaatatatcaacatttttttctttcatgtttgtatacaaacttcatggacgatttccttctccg |
33624556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 252 - 446
Target Start/End: Complemental strand, 33610006 - 33609811
Alignment:
| Q |
252 |
caaacttcatggatgatttccttctccgtcttctcctttaacaaaccgataccaaaaccaatgtttaccccatatgatgtgcattgaatccaaagcaatt |
351 |
Q |
| |
|
||||||||||||||||||| ||| | ||||||||||||||||| ||| |||||||||||||||| |||||||| ||| |||||||||||||| |||| |
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| T |
33610006 |
caaacttcatggatgattttcttgacgatcttctcctttaacaaatcgacaccaaaaccaatgtttttcccatatggtgtacattgaatccaaaggaatt |
33609907 |
T |
|
| Q |
352 |
cctttagtctccggc-nnnnnnntataatgaaaagagtcatcacaacaacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataac |
446 |
Q |
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||||||||||| ||| |||||| ||||||||||||||| |||||||||||||||||||||| || || |||||||| ||||| |||||| |
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| T |
33609906 |
cctttagtctcaggcaagaaaaatataataaaaagagtcatcacagcaacccaaccagcatagaacaagaaggctccaaacttaaagtgacataac |
33609811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 362
Target Start/End: Complemental strand, 33589376 - 33589297
Alignment:
| Q |
283 |
tctcctttaacaaaccgataccaaaaccaatgtttaccccatatgatgtgcattgaatccaaagcaattcctttagtctc |
362 |
Q |
| |
|
||||||||||||||||| |||| |||||||||| |||||||| || | |||||| ||||||||||||||||| ||||| |
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| T |
33589376 |
tctcctttaacaaaccgccgccaataccaatgtttgccccatataatatacattgactccaaagcaattcctttggtctc |
33589297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 362
Target Start/End: Complemental strand, 33596548 - 33596469
Alignment:
| Q |
283 |
tctcctttaacaaaccgataccaaaaccaatgtttaccccatatgatgtgcattgaatccaaagcaattcctttagtctc |
362 |
Q |
| |
|
||||||||||||||||| |||| |||||||||| |||||||| || | |||||| ||||||||||||||||| ||||| |
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| T |
33596548 |
tctcctttaacaaaccgccgccaataccaatgtttgccccatataatatacattgactccaaagcaattcctttggtctc |
33596469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 446
Target Start/End: Complemental strand, 33619260 - 33619093
Alignment:
| Q |
280 |
tcttctcctttaacaaaccgataccaaaaccaatgtttaccccatatgatgtgcattgaatccaaagcaattcctttagtctccggcnnnnnnnt-ataa |
378 |
Q |
| |
|
|||| |||||||||| ||||| |||||||||| ||| | |||||||| ||| |||||| ||||||| ||||||||| ||||| ||| |||| |
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| T |
33619260 |
tcttgtcctttaacataccgagaccaaaaccagtgtctgccccatatagtgtacattgactccaaaggaattcctttggtctcaggcaagaagaagataa |
33619161 |
T |
|
| Q |
379 |
tgaaaagagtcatcacaacaacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataac |
446 |
Q |
| |
|
|| ||||||||||||| ||||||| ||||||||| | || ||||||||||||| |||||||||| |
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|
| T |
33619160 |
caaacagagtcatcacaataacccaaaaagcatagaagacgaaggccccaaacttcatgtggcataac |
33619093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 362
Target Start/End: Complemental strand, 33603681 - 33603600
Alignment:
| Q |
281 |
cttctcctttaacaaaccgataccaaaaccaatgtttaccccatatgatgtgcattgaatccaaagcaattcctttagtctc |
362 |
Q |
| |
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||||| ||||||||||||| |||| |||||||||| |||||||| || | |||||| ||||||||||||||||| ||||| |
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| T |
33603681 |
cttctactttaacaaaccgccgccaataccaatgtttgccccatataatatacattgactccaaagcaattcctttggtctc |
33603600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 62 - 158
Target Start/End: Original strand, 12059786 - 12059882
Alignment:
| Q |
62 |
ctaaaaactctcaattattaacaaacttcttaactaacttttaacacaagtgaactcctaacaactatgaatgatagattttatcaaatctaaacaa |
158 |
Q |
| |
|
|||||| |||||| || |||||||||||||||||||| | |||||||||| ||||| |||||||||||||| || ||||| |||||||| |||||| |
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| T |
12059786 |
ctaaaatctctcatctaataacaaacttcttaactaacctgtaacacaagtaaactcgtaacaactatgaattatggatttgatcaaatccaaacaa |
12059882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 151
Target Start/End: Original strand, 12053055 - 12053171
Alignment:
| Q |
32 |
aatatacactcacacatgctaattaacttgctaaaaactctcaattattaacaaacttcttaactaacttttaacacaagtgaactcctaacaactatga |
131 |
Q |
| |
|
|||||||||||||| | |||| |||||||||||| |||||| || ||||| ||||||||||| | |||||||||| |||||||||||||||||| |
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| T |
12053055 |
aatatacactcacaattactaagaaacttgctaaaatttctcaactactaacatacttcttaact----tgtaacacaagtaaactcctaacaactatga |
12053150 |
T |
|
| Q |
132 |
atgataga-ttttatcaaatc |
151 |
Q |
| |
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|| || || |||||||||||| |
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|
| T |
12053151 |
attatggatttttatcaaatc |
12053171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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