View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17243_low_6 (Length: 454)
Name: NF17243_low_6
Description: NF17243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17243_low_6 |
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| [»] scaffold1444 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 9 - 438
Target Start/End: Complemental strand, 17117418 - 17116989
Alignment:
| Q |
9 |
gaagaaaattggagacaacgcggtgttgtgtcatcgaatgaatttcaaaaatattatattttcttgtcaccaagttaatgcaacaacagtttacatggtg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17117418 |
gaagaaaattggagacaacgcggtgttgtgtcatcgaatgaatttcaaaaatattatattttcttgtcaccaagttaatgcaacaacagtttacatggtg |
17117319 |
T |
|
| Q |
109 |
ccattggtggcttctgatggaactaaagctaaggcagtaactatttgtcaccatgatacaagaggtatgaatcctgatcatctctataaggttctcaaag |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17117318 |
ccattggtggcttctgatggaactaaagctaaggcagtgactatttgtcaccatgatacaagaggtatgaatcctgatcatctctataaggttctcaaag |
17117219 |
T |
|
| Q |
209 |
tcaagccaggaactgtccctatttgccattttattggcaacaaggccattgcttgggtacctaataatgttgtggatgagtcttttgaccatccttgtgt |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
17117218 |
tcaagccaggaactgtccctatttgccattttattggcaacaaggccattgcttgggtacctaataatgttgtggatgagtctgttgaccatccttgtgt |
17117119 |
T |
|
| Q |
309 |
catctagattttatctagttgtatatgcacattatttctcctttatattacatcacgttcaaaaccatacataaaagataagggttttcaccttcatgga |
408 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
17117118 |
catctagattttatctagttgtatatgcacattatttctcctttatattacatcacgttc-aaaccatacataaaagataagggttttcaccttcataga |
17117020 |
T |
|
| Q |
409 |
gc-ttaatgtatgggctcatcataaagtgtg |
438 |
Q |
| |
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|| |||||||||||||||||||| ||||||| |
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| T |
17117019 |
gctttaatgtatgggctcatcatcaagtgtg |
17116989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 9 - 266
Target Start/End: Original strand, 17107412 - 17107669
Alignment:
| Q |
9 |
gaagaaaattggagacaacgcggtgttgtgtcatcgaatgaatttcaaaaatattatattttcttgtcaccaagttaatgcaacaacagtttacatggtg |
108 |
Q |
| |
|
|||||||||||||||||| || ||| |||||||| || ||||||||||| | || |||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
17107412 |
gaagaaaattggagacaaagcagtgatgtgtcatagattgaatttcaaagacatggtattttattgccaccaagttaatgcaacaacagtttacatggtg |
17107511 |
T |
|
| Q |
109 |
ccattggtggcttctgatggaactaaagctaaggcagtaactatttgtcaccatgatacaagaggtatgaatcctgatcatctctataaggttctcaaag |
208 |
Q |
| |
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| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||| ||| | ||||||||| |
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| T |
17107512 |
ctattggtggcttctgatggaactaaagctaaggcactaactatttgtcaccatgatacaagaggaatgaatcctgatgttctttatgaacttctcaaag |
17107611 |
T |
|
| Q |
209 |
tcaagccaggaactgtccctatttgccattttattggcaacaaggccattgcttgggt |
266 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| ||||||||||||| ||||||||||| |
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|
| T |
17107612 |
tcaagcctggaaccatccctatttgccattttgttggcaacaaggctattgcttgggt |
17107669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 13 - 316
Target Start/End: Complemental strand, 17945502 - 17945199
Alignment:
| Q |
13 |
aaaattggagacaacgcggtgttgtgtcatcgaatgaatttcaaaaatattatattttcttgtcaccaagttaatgcaacaacagtttacatggtgccat |
112 |
Q |
| |
|
||||| ||||||||||| ||| |||||||| |||||||| | ||||| || ||| | ||| ||||| | || || ||||| ||||||||| |||| |
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| T |
17945502 |
aaaataggagacaacgcagtgatgtgtcatagaatgaatcttaaaaaggttggattctattgccaccagatcaacgcgacaacgacttacatggttccat |
17945403 |
T |
|
| Q |
113 |
tggtggcttctgatggaactaaagctaaggcagtaactatttgtcaccatgatacaagaggtatgaatcctgatcatctctataaggttctcaaagtcaa |
212 |
Q |
| |
|
||||||| ||||||||||||||| | |||||| ||||||| || ||||||||||||||||||||| ||||| || |||||| | |||||| ||||||| |
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| T |
17945402 |
tggtggcctctgatggaactaaatccaaggcactaactatctgccaccatgatacaagaggtatggatcctaatatgctctatgaagttctccaagtcaa |
17945303 |
T |
|
| Q |
213 |
gccaggaactgtccctatttgccattttattggcaacaaggccattgcttgggtacctaataatgttgtggatgagtcttttgaccatccttgtgtcatc |
312 |
Q |
| |
|
||| |||||||||||| |||||||||| ||||||||||| || ||||| |||||||| || |||||||| |||||| ||||||| ||||||||||| |
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| T |
17945302 |
gcctggaactgtccctgtttgccatttcattggcaacaaagctattgcctgggtacccaacgatgttgtgagtgagtccgatgaccattcttgtgtcatc |
17945203 |
T |
|
| Q |
313 |
taga |
316 |
Q |
| |
|
|||| |
|
|
| T |
17945202 |
taga |
17945199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 13 - 269
Target Start/End: Complemental strand, 17956500 - 17956244
Alignment:
| Q |
13 |
aaaattggagacaacgcggtgttgtgtcatcgaatgaatttcaaaaatattatattttcttgtcaccaagttaatgcaacaacagtttacatggtgccat |
112 |
Q |
| |
|
||||| ||||||||||| ||| |||| ||| || ||||||| ||||| || |||| | ||| |||||||| ||||| |||||| ||||||||| |||| |
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|
| T |
17956500 |
aaaataggagacaacgcagtgatgtgccatagattgaattttaaaaaagttctattctattgccaccaagtcaatgcgacaacaacttacatggttccat |
17956401 |
T |
|
| Q |
113 |
tggtggcttctgatggaactaaagctaaggcagtaactatttgtcaccatgatacaagaggtatgaatcctgatcatctctataaggttctcaaagtcaa |
212 |
Q |
| |
|
||||||| || |||||||| ||| |||||||| |||| || |||||||||||||| |||||||| ||||| || || || | ||||||||||| || |
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| T |
17956400 |
tggtggcatccgatggaaccaaatctaaggcactaacaatctgtcaccatgatactcgaggtatggatcctaatgtgctttacgatgttctcaaagttaa |
17956301 |
T |
|
| Q |
213 |
gccaggaactgtccctatttgccattttattggcaacaaggccattgcttgggtacc |
269 |
Q |
| |
|
||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
17956300 |
gcctggaactgtccctgtttgccattttattggcaacaaggccgttgcttgggtacc |
17956244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 17004234 - 17004395
Alignment:
| Q |
13 |
aaaattggagacaacgcggtgttgtgtcatcgaatgaatttcaaaaatattatattttcttgtcaccaagttaatgcaacaacagtttacatggtgccat |
112 |
Q |
| |
|
|||||||||||||| | |||| |||||||| || | |||||||||||| || |||||| ||||||||||||||||||||| ||| |||||||||||||| |
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| T |
17004234 |
aaaattggagacaaagtggtgatgtgtcatagattaaatttcaaaaatgttgtattttattgtcaccaagttaatgcaactacaacttacatggtgccat |
17004333 |
T |
|
| Q |
113 |
tggtggcttctgatggaactaaagctaaggcagtaactatttgtcaccatgatacaagaggt |
174 |
Q |
| |
|
||||||||| |||||||| |||||||||||| ||||| | || |||||||||||||||||| |
|
|
| T |
17004334 |
tggtggctttagatggaaccaaagctaaggcactaactgtctgccaccatgatacaagaggt |
17004395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 35 - 271
Target Start/End: Complemental strand, 17999427 - 17999191
Alignment:
| Q |
35 |
tgtgtcatcgaatgaatttcaaaaatattatattttcttgtcaccaagttaatgcaacaacagtttacatggtgccattggtggcttctgatggaactaa |
134 |
Q |
| |
|
|||||||||||||||||||| | || || |||||| |||||||||||| |||||| ||||| ||||||||| || ||| |||| |||||||||| ||| |
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|
| T |
17999427 |
tgtgtcatcgaatgaatttcgagaaagttgtattttattgtcaccaagtgaatgcatcaacaacttacatggtccctttgttggcctctgatggaagtaa |
17999328 |
T |
|
| Q |
135 |
agctaaggcagtaactatttgtcaccatgatacaagaggtatgaatcctgatcatctctataaggttctcaaagtcaagccaggaactgtccctatttgc |
234 |
Q |
| |
|
|| ||| ||| | || |||||||||||| ||||||||||||||||| || ||| || | |||||||||||||||||||||||| ||||| | ||| |
|
|
| T |
17999327 |
agttaatgcattggctgcttgtcaccatgacacaagaggtatgaatccgaatttgctcgatgaagttctcaaagtcaagccaggaactatccctgtctgc |
17999228 |
T |
|
| Q |
235 |
cattttattggcaacaaggccattgcttgggtaccta |
271 |
Q |
| |
|
|||||| |||| |||||||| |||||||| |||||| |
|
|
| T |
17999227 |
cattttgttggtaacaaggctgttgcttggttaccta |
17999191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 269
Target Start/End: Complemental strand, 17986666 - 17986406
Alignment:
| Q |
9 |
gaagaaaattggagacaacgcggtgttgtgtcatcgaatgaatttcaaaaatattatattttcttgtcaccaagttaatgcaacaacagtttacatggtg |
108 |
Q |
| |
|
|||||||||||||||||| || ||| |||||||| | | |||||| | | || |||||| ||| |||||||| ||||||||| || ||||| || |
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|
| T |
17986666 |
gaagaaaattggagacaaagccgtgatgtgtcataaactaaatttcgatcaagttgtattttattgccaccaagtcaatgcaacatcaacatacatagtt |
17986567 |
T |
|
| Q |
109 |
ccattggtggcttctgatggaactaaagctaaggcagtaactatttgtcaccatgatacaagaggtatgaatcctgatcatctctataaggttctcaaag |
208 |
Q |
| |
|
|| || ||||| ||||||||||||||||| |||||| |||| || || |||||||| || ||||||||| |||||||| || ||| | |||||||||| |
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|
| T |
17986566 |
cctttagtggcctctgatggaactaaagcgaaggcactaacaatatgccaccatgacacgagaggtatggatcctgatgtgctttatgaagttctcaaag |
17986467 |
T |
|
| Q |
209 |
tcaagccaggaactgtccctatttgccattttattggcaacaaggccattgcttgggtacc |
269 |
Q |
| |
|
||||||| ||||| | || || || |||||| || |||||||||||||||| |||||||| |
|
|
| T |
17986466 |
tcaagcctggaacaattccaatatgtcattttgttagcaacaaggccattgcatgggtacc |
17986406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1444 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold1444
Description:
Target: scaffold1444; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 200 - 269
Target Start/End: Original strand, 24 - 93
Alignment:
| Q |
200 |
ttctcaaagtcaagccaggaactgtccctatttgccattttattggcaacaaggccattgcttgggtacc |
269 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
24 |
ttctcaaagtcaagcctggaactgtccctatttgccattttgttggtaacaaggccattgcttgggtacc |
93 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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