View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17243_low_8 (Length: 353)
Name: NF17243_low_8
Description: NF17243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17243_low_8 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 16 - 353
Target Start/End: Complemental strand, 4094611 - 4094274
Alignment:
| Q |
16 |
aatatctagatgaatgattggatttttcaaacataaacactaattattatgctgagtatttaacatccatcagtttctctcagtgatgtttcacctaatg |
115 |
Q |
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| T |
4094611 |
aatatctagatgaatgattggatttttcaaacatacacactaattattatgctgagtatttaacatccatcagtttctctcagtgatgtttcacctaatg |
4094512 |
T |
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| Q |
116 |
gttttggaatatttttcttttaccatttcatagtggaaaagaaacctcaattaggcataatgctgattaaaagaattagtgtaactaggagaaacaaaca |
215 |
Q |
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| T |
4094511 |
gttttggaatatttttcttttaccatttcatagtggaaaagaaacctcaattaggcataatgctgattaaaagaattagtgtaactaggagaaacaaaca |
4094412 |
T |
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| Q |
216 |
attaaattggttggtacaattagccttatgtaattaattacacttgaaagctttagtatgaaaggttctttaaatgagtataggaacaaggattaatttg |
315 |
Q |
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| T |
4094411 |
attaaattggttggtacaattagccttatgtaattaattacacttgaaagctttagtatgaaaggttctttaaatgagtataggaacaaggattaatttg |
4094312 |
T |
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| Q |
316 |
tgactgtatattactctgatggaaactaaaagtggaac |
353 |
Q |
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| T |
4094311 |
tgactgtatattactctgatggaaactaaaagtggaac |
4094274 |
T |
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