View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17244_high_6 (Length: 209)
Name: NF17244_high_6
Description: NF17244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17244_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 23 - 195
Target Start/End: Complemental strand, 39519754 - 39519582
Alignment:
| Q |
23 |
cattttcatctaatatttgttactgtttcaatttctttcaacatttttaccccattgcagccaggttatcttggaaagcttcttccagattctgctccta |
122 |
Q |
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| T |
39519754 |
cattttcatctaatatttgttattgtttcaatttctttcaacatttttaccccattgcagccaggttatcttggaaagcttcttccagattctgctccta |
39519655 |
T |
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| Q |
123 |
ctcatcctgaatcattgcaacatgttttaaatggtttaattacttacttttctcaattaattgacctttgctt |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39519654 |
ctcatcctgaatcattgcaacatgttttaaatggtttaattacttacttttctcaattaattgacctttgctt |
39519582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 23 - 181
Target Start/End: Complemental strand, 39532212 - 39532054
Alignment:
| Q |
23 |
cattttcatctaatatttgttactgtttcaatttctttcaacatttttaccccattgcagccaggttatcttggaaagcttcttccagattctgctccta |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39532212 |
cattttcatctaatatttgttactgtttcaatttctttcaatatttttaccccattgcagccaggttatcttggaaagcttctaccagattctgctccta |
39532113 |
T |
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| Q |
123 |
ctcatcctgaatcattgcaacatgttttaaatggtttaattacttacttttctcaatta |
181 |
Q |
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| T |
39532112 |
ctcatcctgaatcattgcaacatgttttaaatggtttaattacttacttttctcaatta |
39532054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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