View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17244_low_2 (Length: 448)
Name: NF17244_low_2
Description: NF17244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17244_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 4522210 - 4521779
Alignment:
| Q |
1 |
atacctctttagccttgcttatatatttggtgatcccattgatattttccttatct-tgcctttcaacgacaaaagtacatgtctcggcagaacatattt |
99 |
Q |
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| T |
4522210 |
atacctctttagccttgcttatatatttggtgatcccattgatattttccttatctgtgcctttcaacgacaaaagtacatgtctcggcagaacatattt |
4522111 |
T |
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| Q |
100 |
ccgctcatctgcacttagatcatgcctcacaaatgtgtgaccagattatttttcaaggggttaggccatataatgtaagggctcatagtcctgtgttcaa |
199 |
Q |
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| T |
4522110 |
ccgctcatctgcacttagatcatacctcacaaatgtgtgaccaaattatttttcaaggggttaggccatataatgtaagggctcaaagtcctgtgttcaa |
4522011 |
T |
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| Q |
200 |
aatcaactataccaatctctcaaacaacttccttccttttcattttcctgtcattattttgagtctgtttggattgactttgagcttatctactagtatg |
299 |
Q |
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| T |
4522010 |
agtcaactataccaatctctcaaacaacttccttccttttcattttcctgtcattattttgagtctgtttggattgactttgagcttatctactggtatg |
4521911 |
T |
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| Q |
300 |
atatcttatgagactttgaaagaacttatgacatgtgtataagcaatttttataatgtatttctatacgctctataggatagcttacgataacttattgt |
399 |
Q |
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| T |
4521910 |
ataacttatgagactttgaaataacttatgacatgtgtataagcaatttt--taatgtatttctatacgctctataggatagcttacgataacttattgt |
4521813 |
T |
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| Q |
400 |
acatgaagacaatttgacattttttaatcctttg |
433 |
Q |
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| T |
4521812 |
acatgaagacaatttgacattttttaatcctttg |
4521779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 4511241 - 4511172
Alignment:
| Q |
203 |
caactataccaatctctcaaacaacttccttccttttcattttcctgtcattattttgagtctgtttgga |
272 |
Q |
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||||||||| ||| ||||||||||||||||| ||||||||||| ||||||||||||| ||| ||||||| |
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| T |
4511241 |
caactatacgaatatctcaaacaacttccttatttttcattttcttgtcattattttgggtcagtttgga |
4511172 |
T |
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