View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17244_low_3 (Length: 433)
Name: NF17244_low_3
Description: NF17244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17244_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 8e-71; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 121 - 260
Target Start/End: Complemental strand, 35822859 - 35822720
Alignment:
| Q |
121 |
ataaataaagttgaagtgaagtgatgtcatgtggaaaatacaaaaagaacatcaaactttaatattaattgaagtcgatatcaaaagtcgcatttatcta |
220 |
Q |
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| T |
35822859 |
ataaataaagttgaagtgaagtgatgtcatgtggaaaatacaaaaagaacaccaaactttaatattaattgaagtcgatatcaaaagtcgcatttatcta |
35822760 |
T |
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| Q |
221 |
caatattatcacaagtttaaattgaagtggacattcctta |
260 |
Q |
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| T |
35822759 |
caatattatcacaagtttaaattgaagtggacattcctta |
35822720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 35823170 - 35823047
Alignment:
| Q |
1 |
taagaaagggaaaattgaaattgaatcatgtagggactgtccacgtgatggtcacaagggcataccagtagtggaatgaaagctagcatcttcctaactc |
100 |
Q |
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| T |
35823170 |
taagaaagggaaaattgaaattgaatcatgtagggactgtccacgtgatggtcacaagggcataccagtagtggaatgaaagctagcatcttcctaactt |
35823071 |
T |
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| Q |
101 |
ctaaatttgatcctataattataa |
124 |
Q |
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| T |
35823070 |
ctaaatttgatcctataattataa |
35823047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 321 - 419
Target Start/End: Complemental strand, 35822583 - 35822485
Alignment:
| Q |
321 |
ttatgaggtagtgagtgttgtaccatccaaaaattaaatttttatatgtaaactacttcaagacatatgtatgctagagagttttgttatacccatatt |
419 |
Q |
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| T |
35822583 |
ttatgaggtagtgagtgttgtaccatccaaaaattaaatttttatgtgtaaactacttcaagacatatgtatgctagagagtttcgttatacccatatt |
35822485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 325
Target Start/End: Complemental strand, 35822695 - 35822667
Alignment:
| Q |
297 |
agacatttcttatttgaatatatattatg |
325 |
Q |
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| T |
35822695 |
agacatttcttatttgaatatatattatg |
35822667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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