View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17244_low_4 (Length: 429)
Name: NF17244_low_4
Description: NF17244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17244_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 14 - 408
Target Start/End: Original strand, 54080977 - 54081371
Alignment:
| Q |
14 |
aatattatactatattgttcgatatccttagtttacctttgcttgatttgctacttcaagctgctacattaatggctgcaccttggtcgtgttgtttact |
113 |
Q |
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| T |
54080977 |
aatattatactatattgttcgatatccttagtttacctttgcttgatttgctacttcaagctgctacattaatggctgcaccttggtcgtgttgtttact |
54081076 |
T |
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| Q |
114 |
tgcactgcttgttttggtgtcgattattgaatcagaaagcagagtggctaggaaggatttgggtttggaccttggtggattgggaattggacttggtgca |
213 |
Q |
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| T |
54081077 |
tgcactgcttgttttggtgtcaattattgaatcagaaagcagagtggctaggaaggatttgggtttggaccttggtggattgggaattggacttggtgca |
54081176 |
T |
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| Q |
214 |
ggagttggtttaggaattggaggtggcagtggctctggagccggagctggtgcaggctctggttctggttctagctcttcctcaagttcatcgtcctctt |
313 |
Q |
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| T |
54081177 |
ggagttggtttaggaattggaggtggcagtggctctggagccggagctggtgcaggctctggttctggttctagctcttcctcaagttcatcgtcctctt |
54081276 |
T |
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| Q |
314 |
cgtcttctagttctgggtctggttccggggcagggtcggaagcaggctcatatgcaggctctcgggctggttcgggatcaggtggtagaagtcgc |
408 |
Q |
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| T |
54081277 |
cgtcttctagttctgggtctggttccggggcagggtcggaagcaggctcatatgcaggctctcgggctggttcgggatcaggtggtagaagtcgc |
54081371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 84 - 275
Target Start/End: Original strand, 54084426 - 54084617
Alignment:
| Q |
84 |
aatggctgcaccttggtcgtgttgtttacttgcactgcttgttttggtgtcgattattgaatcagaaagcagagtggctaggaaggatttgggtttggac |
183 |
Q |
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| T |
54084426 |
aatggctgcaccttggtcatgttgtttacttgcggtgctcgttttgatgtcagttattgaatcagaaagcagagtagcaaggaaggatttgggtttggac |
54084525 |
T |
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| Q |
184 |
cttggtggattgggaattggacttggtgcaggagttggtttaggaattggaggtggcagtggctctggagccggagctggtgcaggctctgg |
275 |
Q |
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| T |
54084526 |
ctcggtgggttgggaattggacttggtgcaggagtaggcttgggaattggaggtggcagtggctctggagccggagcaggagctggctctgg |
54084617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 243 - 408
Target Start/End: Original strand, 54084609 - 54084774
Alignment:
| Q |
243 |
tggctctggagccggagctggtgcaggctctggttctggttctagctcttcctcaagttcatcgtcctcttcgtcttctagttctgggtctggttccggg |
342 |
Q |
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| T |
54084609 |
tggctctggagccggagcaggagctggctctggctctggttctagttcttcctcaagttcatcatcatcttcatcttctagttccggttccggttctggg |
54084708 |
T |
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| Q |
343 |
gcagggtcggaagcaggctcatatgcaggctctcgggctggttcgggatcaggtggtagaagtcgc |
408 |
Q |
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| T |
54084709 |
gcagggtcggaggcaggctcatatgcaggctctcgggctggttcgggatcaggtggtagaagtcgc |
54084774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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