View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17245_high_1 (Length: 757)
Name: NF17245_high_1
Description: NF17245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17245_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 290 - 734
Target Start/End: Original strand, 39028054 - 39028494
Alignment:
| Q |
290 |
caattgaaatatgaacctgatgagatagaaagccaatgcaaacaggaaatttcacagcctcaaagtaacaacaacaatgtcacttcttctaatgatagaa |
389 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39028054 |
caattgaaatatgaacctgatgaggtagaaagccaatgcaaacaggaaaattcacagcctcaaagtaacaacaacaatgtcacttcttctaatgatagaa |
39028153 |
T |
|
| Q |
390 |
ttactgatccaaagagagtcaaaaggtaattatcaaacacttctatatctacagataaaaattaaaacatgtaggaataggttgaaatttaaaacaannn |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39028154 |
ttactgatccaaagagagtcaaaaggtaattatctaacacttctatatctatagataaaaattaaaacatgtaggaataggatgaaatttaaaacaattt |
39028253 |
T |
|
| Q |
490 |
nnnnncttctaaagttcttgcataattcaatttttctaatagtatatttttatctatacatatgcttaattttgctaataaacttgctatgcccacatga |
589 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
39028254 |
tttttcttctaaagttcttgcataattcaatttttctaatagtatatttttatctatacatatgcttaattttgctaataaacttgcaatgcccacatga |
39028353 |
T |
|
| Q |
590 |
cataattttggagtacttcattattaattgtagattannnnnnnaagcatgattttgatattctagttgtaattgttgattagttttcatgcattgcact |
689 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
39028354 |
cataattttggagtacttcatt----attgtagattatttttttaagcatgattttgatattctagttgtaattgttgattagttttcatgcatttctct |
39028449 |
T |
|
| Q |
690 |
ttataattgaaatattgttgatcttggtttcttgaacttattata |
734 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
39028450 |
ttataattgaaatattgttgatcttgttttcttgaacttattata |
39028494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 39027781 - 39027985
Alignment:
| Q |
17 |
aggtcggtcagcgattcagtcacattcttagaaacaccaatgctcgatggaaaacacgatggtaacaacaatgacaacgagttcgacaagtttgatgatg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39027781 |
aggtcggtcagcgattcagtcacattcttagaaacaccaatgctcgatggaaaacacgatggtaacaacaatgacaacgagttcgacaagtttgatgatg |
39027880 |
T |
|
| Q |
117 |
aacaatttttgtccatgttcagtgatgaaatatctggtgtcaataacatgccaccaacattgtcttcgtcgaacccttcgagtccttcagatcagaattt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39027881 |
aacaatttttgtccatgttcagtgatgaaatatctggtgtcaataacatgccaccaacattgtcttcgtcgaacccttcgagtccttcagatcagaattt |
39027980 |
T |
|
| Q |
217 |
tgtca |
221 |
Q |
| |
|
||||| |
|
|
| T |
39027981 |
tgtca |
39027985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University