View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17245_high_10 (Length: 237)
Name: NF17245_high_10
Description: NF17245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17245_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 33145871 - 33145655
Alignment:
| Q |
1 |
tggttatgttcataagggaattttgcctactggaaaggaaattgctgttaaaagtttaaaagcgggtagtggacaaggcgaacgtgagtttcaagctgag |
100 |
Q |
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| T |
33145871 |
tggttatgttcataagggaattttgcctactggaaaggaaattgctgttaaaagtttaaaagcgggtagtggacaaggcgaacgtgagtttcaagctgag |
33145772 |
T |
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| Q |
101 |
attgatatcattagtcgtgttcatcatcgtcatcttgtgtcgcttgttggatattgtgtttctggtggacaaagaatgttggtttatgaatttgttccaa |
200 |
Q |
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| T |
33145771 |
attgatatcattagtcgtgttcatcatcgtcatcttgtgtcgcttgttggatattgtgtttctggtggacagagaatgttggtttatgaatttgttccaa |
33145672 |
T |
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| Q |
201 |
ataaaactttggaatat |
217 |
Q |
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| T |
33145671 |
ataaaactttggaatat |
33145655 |
T |
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Target: chr5 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 31 - 193
Target Start/End: Original strand, 7563734 - 7563896
Alignment:
| Q |
31 |
tggaaaggaaattgctgttaaaagtttaaaagcgggtagtggacaaggcgaacgtgagtttcaagctgagattgatatcattagtcgtgttcatcatcgt |
130 |
Q |
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| T |
7563734 |
tggaaaggaaatagctgtcaagagtttaaaatcgggtagcggacaaggagaacgggagttccaagctgagattgacatcattagtcgtgttcatcatcgt |
7563833 |
T |
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| Q |
131 |
catcttgtgtcgcttgttggatattgtgtttctggtggacaaagaatgttggtttatgaattt |
193 |
Q |
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| T |
7563834 |
catcttgtttcacttgttggatattgtatttctggtggccaaagaatgttggtctatgaattt |
7563896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 153
Target Start/End: Original strand, 32902780 - 32902874
Alignment:
| Q |
59 |
aaagcgggtagtggacaaggcgaacgtgagtttcaagctgagattgatatcattagtcgtgttcatcatcgtcatcttgtgtcgcttgttggata |
153 |
Q |
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||||| ||||| |||||||| ||||| || ||||||||||| |||| || ||||| |||||||||||| |||||||| || ||||||||||| |
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| T |
32902780 |
aaagctggtagcggacaaggagaacgcgaatttcaagctgaagttgagattattagccgtgttcatcataaacatcttgtttctcttgttggata |
32902874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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