View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17245_high_7 (Length: 298)

Name: NF17245_high_7
Description: NF17245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17245_high_7
NF17245_high_7
[»] chr2 (6 HSPs)
chr2 (1-285)||(17904690-17904974)
chr2 (139-285)||(17861107-17861253)
chr2 (101-285)||(17885293-17885477)
chr2 (173-285)||(17844941-17845053)
chr2 (173-268)||(17820964-17821059)
chr2 (185-271)||(17914721-17914807)


Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 17904974 - 17904690
Alignment:
Q  1 acttgtgtaaacaattcctcaaaaatctataagatattctagtattcaatatgagacagaaagagtactaacatttttcattccaaaaaacaaagtaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17904974 acttgtgtaaacaattcctcaaaaatctataagatattctagtattcaatatgagacagaaagagtactaacatttttcattccaaaaaacaaagtaaat 17904875  T
Q  101 ttacctgtttcgatgtcttatattgtgaagatgtttaacaaggtcatcccaataaagatttgaaccatatataatggcaaaatcaataccatctaaggta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17904874 ttacctgtttcgatgtcttatattgtgaagatgtttaacaaggtcatcccaataaagatttgaaccatatataatggcaaaatcaattccatctaaggta 17904775  T
Q  201 acacttccaagtggaccagattgaccactaaggaacttagcatttagataatcagcaacatttttagcatcatctggtgaactaa 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17904774 acacttccaagtggaccagattgaccactaaggaacttagcatttagataatcagcaacatttttagcatcatctggtgagctaa 17904690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 139 - 285
Target Start/End: Original strand, 17861107 - 17861253
Alignment:
Q  139 caaggtcatcccaataaagatttgaaccatatataatggcaaaatcaataccatctaaggtaacacttccaagtggaccagattgaccactaaggaactt 238  Q
    ||||||||||||| |||||||||| |||   |  |||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17861107 caaggtcatcccagtaaagatttgtacctccttcaatgtcaaaatcaattccatctaaggtaacacttccaagtggaccggattgaccactaaggaactt 17861206  T
Q  239 agcatttagataatcagcaacatttttagcatcatctggtgaactaa 285  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||    
T  17861207 agcatttagataatcagcaacatttttagcatcctctggtgagctaa 17861253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 101 - 285
Target Start/End: Complemental strand, 17885477 - 17885293
Alignment:
Q  101 ttacctgtttcgatgtcttatattgtgaagatgtttaacaaggtcatcccaataaagatttgaaccatatataatggcaaaatcaataccatctaaggta 200  Q
    |||||||||| | ||||||| ||||| |||||   || ||||||||||||| ||||||||   |||   |  |||| |||||||||||||||||||||||    
T  17885477 ttacctgttttgttgtcttagattgtcaagattcctagcaaggtcatcccagtaaagattgctacctccttcaatgtcaaaatcaataccatctaaggta 17885378  T
Q  201 acacttccaagtggaccagattgaccactaaggaacttagcatttagataatcagcaacatttttagcatcatctggtgaactaa 285  Q
    |||||||||||||||||| ||||||||||||| || |||| ||  || ||||||||||||||||||||||| |||||||| ||||    
T  17885377 acacttccaagtggaccaaattgaccactaagaaagttagtatagaggtaatcagcaacatttttagcatcgtctggtgagctaa 17885293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 173 - 285
Target Start/End: Complemental strand, 17845053 - 17844941
Alignment:
Q  173 aatggcaaaatcaataccatctaaggtaacacttccaagtggaccagattgaccactaaggaacttagcatttagataatcagcaacatttttagcatca 272  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||| ||  || |||||||||||||||||||||||     
T  17845053 aatgtcaaaatcaataccatctaaggtaacacttccaagtggaccaaattgaccactaagaaagttagtatagaggtaatcagcaacatttttagcatcg 17844954  T
Q  273 tctggtgaactaa 285  Q
    |||||||| ||||    
T  17844953 tctggtgagctaa 17844941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 173 - 268
Target Start/End: Original strand, 17820964 - 17821059
Alignment:
Q  173 aatggcaaaatcaataccatctaaggtaacacttccaagtggaccagattgaccactaaggaacttagcatttagataatcagcaacatttttagc 268  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||| ||  || ||||||| || |||||||||    
T  17820964 aatgtcaaaatcaataccatctaaggtaacacttccaagtggaccaaattgaccactaagaaagttagtatagaggtaatcagaaagatttttagc 17821059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 185 - 271
Target Start/End: Complemental strand, 17914807 - 17914721
Alignment:
Q  185 aataccatctaaggtaacacttccaagtggaccagattgaccactaaggaacttagcatttagataatcagcaacatttttagcatc 271  Q
    |||||||| ||| ||||||||||||||||||||| |||||||| ||||||| |||| |  |||||||| ||| ||||||||||||||    
T  17914807 aataccatttaaagtaacacttccaagtggaccaaattgaccattaaggaagttagtaaatagataattagctacatttttagcatc 17914721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University