View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17245_high_9 (Length: 268)
Name: NF17245_high_9
Description: NF17245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17245_high_9 |
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| [»] scaffold0907 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 21 - 250
Target Start/End: Complemental strand, 42945979 - 42945750
Alignment:
| Q |
21 |
attttcaccctactattcctcaaacttctctgactcagatgcctatgcaaaggaccaaaggagagtaggtggtttaggaagagccggaggagaaggcgtg |
120 |
Q |
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| T |
42945979 |
attttcaccctactattcctcaaacttttctgactcagatgcctatgcaaaggaccaaaggagagtaggtggtttaggaagagccggaggagaaggcgtg |
42945880 |
T |
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| Q |
121 |
gcggtggagaaagattctgaagatccttatcttgatttcaggcattccatgcttcaaatgatattggagaatgaaatatactctaaagatgaccttagag |
220 |
Q |
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| T |
42945879 |
gcggtggagaaagattctgaagatccttatcttgatttcaggcattccatgcttcaaatgatattggagaatgaaatatactctaaagatgaccttagag |
42945780 |
T |
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| Q |
221 |
agcttttgaactgttttcttcagctgaatg |
250 |
Q |
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| T |
42945779 |
agcttttgaactgttttcttcagctgaatg |
42945750 |
T |
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Target: scaffold0907 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0907
Description:
Target: scaffold0907; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 124 - 249
Target Start/End: Complemental strand, 3039 - 2914
Alignment:
| Q |
124 |
gtggagaaagattctgaagatccttatcttgatttcaggcattccatgcttcaaatgatattggagaatgaaatatactctaaagatgaccttagagagc |
223 |
Q |
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| T |
3039 |
gtggagaaagattctgatgacccttatcttgattttcgacattcaatgttgcagatgatattggagaatgagatatattctaaagatgatcttagagagc |
2940 |
T |
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| Q |
224 |
ttttgaactgttttcttcagctgaat |
249 |
Q |
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| T |
2939 |
ttttgaactgttttcttcagctgaat |
2914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 18829605 - 18829681
Alignment:
| Q |
118 |
gtggcggtggagaaagattctgaagatccttatcttgatttcaggcattccatgcttcaaatgatattggagaatga |
194 |
Q |
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| T |
18829605 |
gtggcggtagagaaggattctgaggatccgtatcatgatttcaaacattctatgcttcaaatgatcttcgagaatga |
18829681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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