View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17245_low_10 (Length: 307)
Name: NF17245_low_10
Description: NF17245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17245_low_10 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 59 - 307
Target Start/End: Complemental strand, 25324304 - 25324057
Alignment:
| Q |
59 |
aaatcgacatctaagattttgagagaagcatactctaaagtctcaagctaagatcatcggaccaactcaagtggatataattaaacggactgttaaatct |
158 |
Q |
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| T |
25324304 |
aaatcgacacctaagactttgagaggagcatactctaaagtctcaaactaagaccatcgaatcaactcaagtgggtataattaaacggactgttaaatct |
25324205 |
T |
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| Q |
159 |
tcttcatacaaagataattgtcggaattaagatatagtctgaaattaagatttaatctttggtcctttaaggtgtatgagttaggatgctaaataaattt |
258 |
Q |
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| T |
25324204 |
tcttcatacaaagataattttcggaattaagatttagtctgaaattaagatttaatctttggtcctttaaggtgtatgagttaggatgctaaataaattt |
25324105 |
T |
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| Q |
259 |
tatgaaagaggtgtagaattcaaacccatgcttctaataaattcccttc |
307 |
Q |
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| T |
25324104 |
tatg-aagaggggtagagttcaaacccatgcttctaataaattcccttc |
25324057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 25324370 - 25324340
Alignment:
| Q |
1 |
aaattaatactttttatcttaaataaatgga |
31 |
Q |
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| T |
25324370 |
aaattaatactttttatcttaaataaatgga |
25324340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 132
Target Start/End: Complemental strand, 26061738 - 26061691
Alignment:
| Q |
85 |
agcatactctaaagtctcaagctaagatcatcggaccaactcaagtgg |
132 |
Q |
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| T |
26061738 |
agcatactctcaagtctcaagctaatatcatcagaccaactcatgtgg |
26061691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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