View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17245_low_12 (Length: 285)
Name: NF17245_low_12
Description: NF17245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17245_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 49520256 - 49519985
Alignment:
| Q |
1 |
ctaagtgagaaattgaaaggatacacatgattgctactttgtgtgaccagatatattttactcgtttttagacagtagattacctttcatatattctgct |
100 |
Q |
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| T |
49520256 |
ctaagtgagaaattgaaaggatacacatgattgctactttgcgtggccagatatattttactcgtttttagacagtagattacctttcatatattctgct |
49520157 |
T |
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| Q |
101 |
ctcctctactgtgataacaagttgagaaattacatgctcaacttgtttgccgaattccaattttcagcattaaccagcttgccaactagcatgttggggt |
200 |
Q |
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| T |
49520156 |
ctcctctactgtgataacaagttgagaaattacatgctcaacttgtttgctgaatgccaattttcagcattaaccagcttgccaactagcatgttggggt |
49520057 |
T |
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| Q |
201 |
attggatgggttagttattgttttatagtttgggtaatttgatttttgttatttgtgttttctgttctacct |
272 |
Q |
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| T |
49520056 |
attggatgggttagttattgttttatagtttgggtaatttgatttttgttatttgtgttttctgttctacct |
49519985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 125 - 243
Target Start/End: Complemental strand, 49530957 - 49530839
Alignment:
| Q |
125 |
agaaattacatgctcaacttgtttgccgaattccaattttcagcattaaccagcttgccaactagcatgtt-ggggtattggatgggttagttattgttt |
223 |
Q |
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| T |
49530957 |
agaaattacatgctctacttgttcgccaaatgccaattttaag-atttaccagcttgctaacaagcatgtgaggggcattgtatgggttagttattgtta |
49530859 |
T |
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| Q |
224 |
tatagtttgggtaatttgat |
243 |
Q |
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| T |
49530858 |
tacagttggggtagtttgat |
49530839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 49531097 - 49531046
Alignment:
| Q |
60 |
actcgtttttagacagtagattacctttcatatattctgctctcctctactg |
111 |
Q |
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| T |
49531097 |
actcgtttttagacaatacattacctttcatatgttctgctctcctctactg |
49531046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 49525141 - 49525070
Alignment:
| Q |
131 |
tacatgctcaacttgtttgccgaattccaattttcagcattaaccagcttgccaactagcatgttggggtattg |
204 |
Q |
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| T |
49525141 |
tacatgctcaacttgtttgttg--tgccaattttcagcattgaccagcttgctgactagcatgttgcggtattg |
49525070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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