View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17245_low_17 (Length: 229)
Name: NF17245_low_17
Description: NF17245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17245_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 14458361 - 14458167
Alignment:
| Q |
12 |
gaagaatattcgaggaaactcgtgaagggtgttgattattttgattctatcaaagaactcctcgatgaagttgctgcataccctctactaatcaaagatc |
111 |
Q |
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| T |
14458361 |
gaagaatattcgaggaaactcgtgaagggtgttgattattttgattctatcaaagaactcctcgatgaagttgctgcataccctctactaatcaaagatc |
14458262 |
T |
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| Q |
112 |
ctgcttcgaaaaatgattctgatagaaaagactctaaagggaagcagataaatgaatccgattacgttgctgtaaggtacttggataaggggagc |
206 |
Q |
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| T |
14458261 |
ctgcttcgaaaaatgattctgatagaaaagactctaaagggaagcagataaaggaatccgattacgttgctgtaaggtacttggataaggggagc |
14458167 |
T |
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Target: chr2; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 14467246 - 14467052
Alignment:
| Q |
12 |
gaagaatattcgaggaaactcgtgaagggtgttgattattttgattctatcaaagaactcctcgatgaagttgctgcataccctctactaatcaaagatc |
111 |
Q |
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||||| ||||||||||| || |||||||||||||||||||| ||||||||||||| ||||||||||||||||||| || ||||||||||| ||||||| |
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| T |
14467246 |
gaagagtattcgaggaatctagtgaagggtgttgattatttccattctatcaaagatatcctcgatgaagttgctgcttatcctctactaataaaagatc |
14467147 |
T |
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| Q |
112 |
ctgcttcgaaaaatgattctgatagaaaagactctaaagggaagcagataaatgaatccgattacgttgctgtaaggtacttggataaggggagc |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14467146 |
ctgcttcgaaaaatgattctgatagaaaagactctaaagcgaagcagataaaggaattcgattacgttgctgtaaggtacttggataaggggagc |
14467052 |
T |
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