View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17245_low_18 (Length: 225)
Name: NF17245_low_18
Description: NF17245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17245_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 2790460 - 2790573
Alignment:
| Q |
14 |
caaagggtaattttacagtgaaattttttaattctggatataatgtataactgtaatcctggttcaataaagagatatgtcagcaatcaccttgtcattt |
113 |
Q |
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| T |
2790460 |
caaagggtaattttacagtgaaattttttaattctggatataatgtataactgtaatcctggttcaataaagagatatgtcagcaatcaccttgtcattt |
2790559 |
T |
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| Q |
114 |
ccttgctaatgtag |
127 |
Q |
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| T |
2790560 |
ccttgctaatgtag |
2790573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 2402924 - 2402821
Alignment:
| Q |
37 |
ttttttaattctggatataatgtataactgtaatcctggttcaataaagagatatgtcagcaatcaccttgtcatttccttgctaatgtagggctttgaa |
136 |
Q |
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| T |
2402924 |
ttttttaatactggatatgatgtattactttaatcttggttcaataaagaggtatgtcagcaatcatattgtcatttccttgctaatgtagggctttgaa |
2402825 |
T |
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| Q |
137 |
ggat |
140 |
Q |
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|||| |
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| T |
2402824 |
ggat |
2402821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 4246427 - 4246545
Alignment:
| Q |
14 |
caaagggtaattttacagtgaaattttttaattctggatataatgtataactgtaatcctggttcaataaagagatatgtcagcaatcaccttgtcattt |
113 |
Q |
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|||||||||||||| ||||||| ||||| | | ||||||||||||| |||||||| | |||||||||||| | ||| |||| ||||| |||| | || |
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| T |
4246427 |
caaagggtaattttgcagtgaactttttgattattggatataatgtacaactgtaacctctgttcaataaagaaacatggcagcgatcacgttgtgaatt |
4246526 |
T |
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| Q |
114 |
ccttgctaatgtagggctt |
132 |
Q |
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| T |
4246527 |
cattgctaatgtagggctt |
4246545 |
T |
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