View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17245_low_2 (Length: 603)

Name: NF17245_low_2
Description: NF17245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17245_low_2
NF17245_low_2
[»] chr4 (7 HSPs)
chr4 (163-585)||(32000826-32001248)
chr4 (163-585)||(31941867-31942289)
chr4 (163-358)||(32003917-32004112)
chr4 (16-118)||(31942334-31942436)
chr4 (16-118)||(32001293-32001395)
chr4 (16-110)||(32004137-32004234)
chr4 (457-526)||(36246545-36246614)
[»] chr7 (2 HSPs)
chr7 (457-524)||(2950124-2950191)
chr7 (325-373)||(28944732-28944780)
[»] chr5 (1 HSPs)
chr5 (432-560)||(18478948-18479076)
[»] chr2 (1 HSPs)
chr2 (471-526)||(37881306-37881361)
[»] chr3 (2 HSPs)
chr3 (489-526)||(20732617-20732654)
chr3 (489-526)||(20740353-20740390)
[»] chr8 (3 HSPs)
chr8 (487-523)||(9622097-9622133)
chr8 (493-523)||(7195709-7195739)
chr8 (481-526)||(39916910-39916955)
[»] chr1 (2 HSPs)
chr1 (494-533)||(27632581-27632620)
chr1 (490-545)||(45594286-45594341)
[»] chr6 (1 HSPs)
chr6 (316-374)||(3912013-3912071)


Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 163 - 585
Target Start/End: Complemental strand, 32001248 - 32000826
Alignment:
Q  163 gaccatgaactttgccatgctttgagaatatcaagacaaggtggaagtgaaggttgaatgagtggagtgattttgttaagaaaaagtcttgcaggtggct 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32001248 gaccatgaactttgccatgctttgagaatatcaagacaaggtggaagtgaaggttgaatgagtggagtgattttgttaagaaaaagtcttgcaggtggct 32001149  T
Q  263 gtggtttggaggattcaaactcaagttgtctttgaactttcagtttattggtttctctaacaagtcttgcttctgcttccaaacgagcactctcccattg 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32001148 gtggtttggaggattcaaactcaagttgtctttgaactttcagtttattggtttctctaacaagtcttgcttctgcttccaaacgagcactctcccattg 32001049  T
Q  363 agccatgtgactgaggttagctgagtctttggtgtactgagaagtggaacttccaggtgaatgatcctgttttggtttgtgagttgttgggtctattccc 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32001048 agccatgtgactgaggttagctgagtctttggtgtactgagaagtggaacttccaggtgaatgatcctgttttggtttgtgagttgttgggtctattccc 32000949  T
Q  463 attcttgttagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttcttggaagttgtgctgctattgctgaccatctgtgtg 562  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32000948 attcttgttagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttcttggaagttgtgctgctattgctgaccatctgtgtg 32000849  T
Q  563 cacataatcaatcataactaaaa 585  Q
    |||||||||||||||||| ||||    
T  32000848 cacataatcaatcataacaaaaa 32000826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 163 - 585
Target Start/End: Complemental strand, 31942289 - 31941867
Alignment:
Q  163 gaccatgaactttgccatgctttgagaatatcaagacaaggtggaagtgaaggttgaatgagtggagtgattttgttaagaaaaagtcttgcaggtggct 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31942289 gaccatgaactttgccatgctttgagaatatcaagacaaggtggaagtgaaggttgaatgagtggagtgattttgttaagaaaaagtcttgcaggtggct 31942190  T
Q  263 gtggtttggaggattcaaactcaagttgtctttgaactttcagtttattggtttctctaacaagtcttgcttctgcttccaaacgagcactctcccattg 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31942189 gtggtttggaggattcaaactcaagttgtctttgaactttcagtttattggtttctctaacaagtcttgcttctgcttccaaacgagcactctcccattg 31942090  T
Q  363 agccatgtgactgaggttagctgagtctttggtgtactgagaagtggaacttccaggtgaatgatcctgttttggtttgtgagttgttgggtctattccc 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31942089 agccatgtgactgaggttagctgagtctttggtgtactgagaagtggaacttccaggtgaatgatcctgttttggtttgtgagttgttgggtctattccc 31941990  T
Q  463 attcttgttagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttcttggaagttgtgctgctattgctgaccatctgtgtg 562  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31941989 attcttgttagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttcttggaagttgagctgctattgctgaccatctgtgtg 31941890  T
Q  563 cacataatcaatcataactaaaa 585  Q
    |||||||||||||||||| ||||    
T  31941889 cacataatcaatcataacaaaaa 31941867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 163 - 358
Target Start/End: Complemental strand, 32004112 - 32003917
Alignment:
Q  163 gaccatgaactttgccatgctttgagaatatcaagacaaggtggaagtgaaggttgaatgagtggagtgattttgttaagaaaaagtcttgcaggtggct 262  Q
    ||||||||||||| ||||||||| |||||||||||| || | ||||||||||||||||||||||| ||||||||||| || ||||||||||||||| | |    
T  32004112 gaccatgaactttaccatgcttttagaatatcaagagaaaggggaagtgaaggttgaatgagtggtgtgattttgttgaggaaaagtcttgcaggttgtt 32004013  T
Q  263 gtggtttggaggattcaaactcaagttgtctttgaactttcagtttattggtttctctaacaagtcttgcttctgcttccaaacgagcactctccc 358  Q
    ||||||||||||||||||| | |||||||||||||||||| | ||| || |||||||||||||||||||||| |||||||||||||||||| ||||    
T  32004012 gtggtttggaggattcaaattaaagttgtctttgaacttttattttgttagtttctctaacaagtcttgcttttgcttccaaacgagcactttccc 32003917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 31942436 - 31942334
Alignment:
Q  16 acaggaagaggtaaaggaagcaaggttgttccaggaaagttcaaagtggatgttggagattcaagatcatcattggataacatcatagcatacatactat 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31942436 acagaaagaggtaaaggaagcaaggttgttccaggaaagttcaaagtggatgttggagattcaagatcatcattggataacatcatagcatacatactat 31942337  T
Q  116 gca 118  Q
    |||    
T  31942336 gca 31942334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 32001395 - 32001293
Alignment:
Q  16 acaggaagaggtaaaggaagcaaggttgttccaggaaagttcaaagtggatgttggagattcaagatcatcattggataacatcatagcatacatactat 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32001395 acagaaagaggtaaaggaagcaaggttgttccaggaaagttcaaagtggatgttggagattcaagatcatcattggataacatcatagcatacatactat 32001296  T
Q  116 gca 118  Q
    |||    
T  32001295 gca 32001293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 32004234 - 32004137
Alignment:
Q  16 acaggaagaggtaaaggaagcaaggttgttccaggaaagttcaaagtggatgttggagattcaaga---tcatcattggataacatcatagcatacat 110  Q
    ||||||||||| | |||||||| ||||||||| || ||||||||||||||||| ||||||||||||   |||||||||||| |||||||| |||||||    
T  32004234 acaggaagaggaagaggaagcagggttgttcccgggaagttcaaagtggatgtaggagattcaagattttcatcattggatgacatcataacatacat 32004137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 457 - 526
Target Start/End: Complemental strand, 36246614 - 36246545
Alignment:
Q  457 attcccattcttgttagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttc 526  Q
    ||||||||||||   ||||||||| | | ||| |||||||| || |||||||||||||||||||||||||    
T  36246614 attcccattcttaagagtcttttcctaatgtgagtgttccaataattcttgatttcattgtctgttcttc 36246545  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 457 - 524
Target Start/End: Complemental strand, 2950191 - 2950124
Alignment:
Q  457 attcccattcttgttagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttct 524  Q
    ||||||||| | |||| ||||||||| || ||||||||||| ||||||||||||||||| ||||||||    
T  2950191 attcccattttggttaatcttttcttaagatgtgtgttccaatagttcttgatttcattatctgttct 2950124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 325 - 373
Target Start/End: Original strand, 28944732 - 28944780
Alignment:
Q  325 agtcttgcttctgcttccaaacgagcactctcccattgagccatgtgac 373  Q
    ||||||||||||||||| |  |  |||||||||||||||||||||||||    
T  28944732 agtcttgcttctgcttcaagccttgcactctcccattgagccatgtgac 28944780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 560
Target Start/End: Complemental strand, 18479076 - 18478948
Alignment:
Q  432 ttttggtttgtgagttgttgggtctattcccattcttgttagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttcttgga 531  Q
    ||||||||||||||| || || ||||| ||||||||  | ||||||||||||| ||   ||||||| |  ||||| |||||||| |||||||| |||||     
T  18479076 ttttggtttgtgagtggtgggatctatccccattctgatgagtcttttcttgatgttaatgttccaatgattctttatttcattatctgttctccttggc 18478977  T
Q  532 agttgtgctgctattgctgaccatctgtg 560  Q
    ||  | ||||||||||  |||||||||||    
T  18478976 aggagagctgctattgtggaccatctgtg 18478948  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 471 - 526
Target Start/End: Original strand, 37881306 - 37881361
Alignment:
Q  471 tagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttc 526  Q
    |||||||||| | | ||| ||||||||||||||||| |||||||||||||||||||    
T  37881306 tagtcttttcctaatgtgcgtgttccagtagttctttatttcattgtctgttcttc 37881361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 489 - 526
Target Start/End: Original strand, 20732617 - 20732654
Alignment:
Q  489 tgtgttccagtagttcttgatttcattgtctgttcttc 526  Q
    |||||||||||||||||| |||||||||||||||||||    
T  20732617 tgtgttccagtagttctttatttcattgtctgttcttc 20732654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 489 - 526
Target Start/End: Original strand, 20740353 - 20740390
Alignment:
Q  489 tgtgttccagtagttcttgatttcattgtctgttcttc 526  Q
    |||||||||||||||||| |||||||||||||||||||    
T  20740353 tgtgttccagtagttctttatttcattgtctgttcttc 20740390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 487 - 523
Target Start/End: Complemental strand, 9622133 - 9622097
Alignment:
Q  487 tgtgtgttccagtagttcttgatttcattgtctgttc 523  Q
    |||||||||||||||||||| ||||||||||||||||    
T  9622133 tgtgtgttccagtagttctttatttcattgtctgttc 9622097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 493 - 523
Target Start/End: Complemental strand, 7195739 - 7195709
Alignment:
Q  493 ttccagtagttcttgatttcattgtctgttc 523  Q
    |||||||||||||||||||||||||||||||    
T  7195739 ttccagtagttcttgatttcattgtctgttc 7195709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 526
Target Start/End: Complemental strand, 39916955 - 39916910
Alignment:
Q  481 ttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttc 526  Q
    |||| ||| |||||||| ||||||||||| ||||||||||||||||    
T  39916955 ttgatgtgagtgttccaatagttcttgatctcattgtctgttcttc 39916910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 494 - 533
Target Start/End: Original strand, 27632581 - 27632620
Alignment:
Q  494 tccagtagttcttgatttcattgtctgttcttcttggaag 533  Q
    |||| |||||||||||||||||||||||||||| ||||||    
T  27632581 tccaatagttcttgatttcattgtctgttcttcctggaag 27632620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 545
Target Start/End: Original strand, 45594286 - 45594341
Alignment:
Q  490 gtgttccagtagttcttgatttcattgtctgttcttcttggaagttgtgctgctat 545  Q
    |||||||| |||||||| || |||||||||||||||| ||| ||||| ||||||||    
T  45594286 gtgttccaatagttcttaatctcattgtctgttcttcctggtagttgagctgctat 45594341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 374
Target Start/End: Complemental strand, 3912071 - 3912013
Alignment:
Q  316 tctctaacaagtcttgcttctgcttccaaacgagcactctcccattgagccatgtgact 374  Q
    |||||||||||||| ||||| ||||| |  | |||||| ||||||||||||||||||||    
T  3912071 tctctaacaagtctagcttcagcttcaagtctagcactttcccattgagccatgtgact 3912013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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