View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17245_low_20 (Length: 211)
Name: NF17245_low_20
Description: NF17245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17245_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 12 - 192
Target Start/End: Original strand, 30872290 - 30872470
Alignment:
| Q |
12 |
ccaagaaaatcttaccattttcacgcaaattaccaaccgtaccgcaattaaccgtatctgagggacaaaacctaatattataattacctataacaccttc |
111 |
Q |
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| T |
30872290 |
ccaataaaatcttaccattttcacgcaaattaccaaccgtaccgcaattaaccgtatctgagggacaaaacctaatattataattacctataacaccttc |
30872389 |
T |
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| Q |
112 |
aattccaaatgaagtcttcaaaattctaaataaactaccatcactccccgctataataagcctccttccactcctattgtc |
192 |
Q |
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| T |
30872390 |
aattccaaatgaaatcttcaaaattctaaatgaattaccatcactccccgctataataagcctccttccactcctattgtc |
30872470 |
T |
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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 30902642 - 30902699
Alignment:
| Q |
127 |
cttcaaaattctaaataaactaccatcactccccgctataataagcctccttccactc |
184 |
Q |
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| T |
30902642 |
cttcacaattctaaaataactaccatcacttccagctataataacccttcttccactc |
30902699 |
T |
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