View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17245_low_3 (Length: 568)
Name: NF17245_low_3
Description: NF17245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17245_low_3 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 441; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 112 - 568
Target Start/End: Complemental strand, 14458805 - 14458349
Alignment:
| Q |
112 |
ttattgttgtaatgaatgttcacttacacttgtgttatttgctaaaattaaattcaatcacattggaatttgtaggtgtgtaagaatttttggggaggaa |
211 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14458805 |
ttattgttgtaatgaatgttcacttacaattgtgttatttgctaaaactaaattcaatcacattggaatttgtaggtgtgtaagaatttttggggaggaa |
14458706 |
T |
|
| Q |
212 |
aattgccgctcgaagactacgtttttgctttgaaggatgtagttggagttgaagcttttgtcgatgcagtaggaattggtacacaaaatgatcctacaaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14458705 |
aattgccgctcgaagactacgtttttgctttgaaggatgtagttggagttgaagcttttgtcgatgcagtaggaattggtacacaaaatgatcctacaaa |
14458606 |
T |
|
| Q |
312 |
tcttgaaggaaatgctatgaagtctatctatgatattcttgaagaaaaagatttctccaagattacatcatatatagaaatagtacacatcctttcgggt |
411 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
14458605 |
tcttgaaggaaatgctatgaagtctatctatgaaattcttgaagaaaaagatttctccaagattacatcatatatagaaatagtacacatcctttcaggt |
14458506 |
T |
|
| Q |
412 |
gattttagaataagcaagacgcaagcaagcgacattttctgggagtctgtttggcctcgtttactagcaaacggttggcattcagagcaacctagtagtc |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14458505 |
gattttagaataagcaagacgcaagcaagcgacattttctgggagtctgtttggcctcgtttactagcaaacggttggcattcagagcaacctagtagtc |
14458406 |
T |
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| Q |
512 |
ttctttctaataagagtgctataattttcattgtccctggaattgaagaatattcga |
568 |
Q |
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| T |
14458405 |
ttctttctaataagagtgctataattttcattgtccctggaattgaagaatattcga |
14458349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 568
Target Start/End: Complemental strand, 14467798 - 14467234
Alignment:
| Q |
1 |
aatccactgtgaaatacatattcacatgtgtcaaaattgaacctgttaccaaacgggaaacttgtaccatatagagatcaaaatcttcttttctagtatt |
100 |
Q |
| |
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|||| ||||||||||| |||||||||| |||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
14467798 |
aatcaactgtgaaata-atattcacatatgtcaagttccaacctgttaccaaacgggaaacttggaccatatagagatcaaaatcttcttttctagtagt |
14467700 |
T |
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| Q |
101 |
ttggcttagatttattgttgtaatgaatgttcacttacacttgtgttatttgctaaaattaaattcaatcacattggaatttgtaggtgtgtaagaattt |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14467699 |
ttggcttagatttattgttgtagtgaatgttcacttacaactgtgttatttgctaaaattaaattcaatcacattggaatttgtaggtgtgtaagaattt |
14467600 |
T |
|
| Q |
201 |
ttggggaggaaaattgccgctcgaagactacgtttttgctttgaaggatgtagttggagttgaagcttttgtcgatgcagtaggaattggtacacaaaat |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| |
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| T |
14467599 |
ttggggaggaaaattgtcgctcgaagactacgtttttgctttgaaggatgtagttggagttgaagcatttgtcaatgcagtaggaattggtgcacaaaat |
14467500 |
T |
|
| Q |
301 |
gatcctacaaatcttgaaggaaatgctatgaagtctatctatgatattcttgaagaaaaagatttctccaagattacatcatatatagaaatagtacaca |
400 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
14467499 |
gatcttacaaatcttgaaggaaatgctatgaagtctatctatgaaattcttgaagaaaaagatttct-caagattacatcatatatagaaatagtacaca |
14467401 |
T |
|
| Q |
401 |
tcctttcgggtgattttagaataagcaagacgcaagcaagcgacattttctgggagtctgtttggcctcgtttactagcaaacggttggcattcagagca |
500 |
Q |
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|||| || ||||||||||||||||||||||| || || |||| ||||||||||||| ||||||||||||| ||||| || || ||||||||||||||||| |
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| T |
14467400 |
tcctctcaggtgattttagaataagcaagactcaggccagcggcattttctgggaggctgtttggcctcgattacttgcgaaaggttggcattcagagca |
14467301 |
T |
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| Q |
501 |
acctagtagtcttctttctaataagagtgctataattttcattgtccctggaattgaagaatattcga |
568 |
Q |
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| T |
14467300 |
acctagtagtcttctttctaataagagtgctataattttcattgtccc-agaattgaagagtattcga |
14467234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 14458866 - 14458826
Alignment:
| Q |
88 |
cttttctagtattttggcttagatttattgttgtaatgaat |
128 |
Q |
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| T |
14458866 |
cttttctagtatgttggcttagatttattgttgtaatgaat |
14458826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 99 - 448
Target Start/End: Complemental strand, 12069492 - 12069152
Alignment:
| Q |
99 |
ttttggcttagatttattgttgtaatgaatgttcacttacacttgtgttatttgctaaaattaaattcaatcacattggaatttgtaggtgtgtaagaat |
198 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
12069492 |
ttttggcttagatttattgttgtaatgaatattcactttcacttgtgttttttgctaaaattaaattcaatcgcattggaatttgtaggtgtgtcagaat |
12069393 |
T |
|
| Q |
199 |
ttttggggaggaaaattgccgctcgaagactacgtttttgctttgaaggatgtagttggagttgaagcttttgtcgatgcagtaggaattggtacacaaa |
298 |
Q |
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|||||||||||||||||| || | ||| || ||||||||||||||||| || ||| |||||||||||| || ||||||||||||||||||||| ||| | |
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| T |
12069392 |
ttttggggaggaaaattgtcgttagaaaacaacgtttttgctttgaagagtgaagtaggagttgaagctcttatcgatgcagtaggaattggtaaacaga |
12069293 |
T |
|
| Q |
299 |
atgatcctacaaatcttgaaggaaatgctatgaagtctatctatgatattcttgaagaaaaagatttctccaagattacatcatatatagaaatagtaca |
398 |
Q |
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|||| | |||||||||||||||||||| | |||||||||| ||||| ||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
12069292 |
atgaccttacaaatcttgaaggaaatgatttgaagtctatttatgaaattcttgaagaaaaatatttctccaagat---------tatagaaatagtaca |
12069202 |
T |
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| Q |
399 |
catcctttcgggtgattttagaataagcaagacgcaagcaagcgacattt |
448 |
Q |
| |
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|||||| || ||||||||| ||||||||||||| ||||| || ||||||| |
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| T |
12069201 |
catcctctcaggtgattttggaataagcaagactcaagctagtgacattt |
12069152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 12069536 - 12069487
Alignment:
| Q |
155 |
aaaattaaattcaatcacattggaatttgtaggtgtgtaagaatttttgg |
204 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
12069536 |
aaaattaaattcaatcacattggaatttgtaggtgtgtcagaatttttgg |
12069487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 321 - 471
Target Start/End: Original strand, 2959000 - 2959149
Alignment:
| Q |
321 |
aaatgctatgaagtctatctatgatattcttgaagaaaaagatttctccaagattacatcatatatagaaatagtacacatcctttcgggtgattttaga |
420 |
Q |
| |
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|||| |||||||||| || ||||| ||||| |||||||| ||||||| ||||||||| ||| |||||||||| || |||||||| ||| ||||||||| |
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| T |
2959000 |
aaattctatgaagtccatttatgagtttcttaaagaaaaatatttctcaaagattacaacatttatagaaatactatacatccttatgggagattttaga |
2959099 |
T |
|
| Q |
421 |
ataagcaagacgcaagcaagcgacattttctgggagtctgtttggcctcgt |
471 |
Q |
| |
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|||||||| || |||||||| |||||||| | ||| |||||||||||||| |
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| T |
2959100 |
ataagcaaaactcaagcaagtgacatttt-ttggaaactgtttggcctcgt |
2959149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 388 - 498
Target Start/End: Original strand, 2941031 - 2941140
Alignment:
| Q |
388 |
gaaatagtacacatcctttcgggtgattttagaataagcaagacgcaagcaagcgacattttctgggagtctgtttggcctcgtttactagcaaacggtt |
487 |
Q |
| |
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|||||| || |||||||| |||||||||||| |||||||| || |||||||| |||||||| | ||| ||||||||||||| ||||| |||| |||| |
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| T |
2941031 |
gaaatactatacatccttatgggtgattttagcataagcaaaactcaagcaagtgacatttt-ttggaaactgtttggcctcgcttacttacaaaaggtt |
2941129 |
T |
|
| Q |
488 |
ggcattcagag |
498 |
Q |
| |
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||||||||||| |
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| T |
2941130 |
ggcattcagag |
2941140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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