View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17245_low_4 (Length: 461)
Name: NF17245_low_4
Description: NF17245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17245_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 21 - 244
Target Start/End: Complemental strand, 29005912 - 29005689
Alignment:
| Q |
21 |
ggcacatggtgattttcttagtagcagagacaaaagtagcaagattaggttaaaatagaaatggtaggccaatattcaaaatagaagtccagaactaaac |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29005912 |
ggcacatggtgattttcttagtagcagagacaaaagtagcaatattaggttaaaatagaaatggtaggccaatattcaaaatagaagtccagaactaaac |
29005813 |
T |
|
| Q |
121 |
ttttcaaattgaaattaaaggcattttgcaggcaagagatggaggagggtccatgtatgtggcttcttataaattaaaaactttaacaagctggttctac |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| || |
|
|
| T |
29005812 |
ttttcaaattgaaattaaaggcattttgcaggcaagatatggaggagggtccatgtatgtggcttcttataaatgaaaatctttaacaagctggttccac |
29005713 |
T |
|
| Q |
221 |
aaaagttccagcccaggcaacata |
244 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
29005712 |
aaaagttccagcccagccaacata |
29005689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 300 - 448
Target Start/End: Complemental strand, 29005635 - 29005487
Alignment:
| Q |
300 |
atatttaaaagtgtattttcaggcattttggggaggcttttttaatggctgaccaactttttaattgagactaatnnnnnnnntcaagtgcttataaaat |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29005635 |
atatttaaaagtgtattttcaggcattttggggaggcttttttaatggctgaccaactttttaattgagactaataaaaaaaatcaagtgcttataaaat |
29005536 |
T |
|
| Q |
400 |
aaatgtgacttttgttcaaacaagattgaattgagaaacagcacaggtt |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29005535 |
aaatgtgacttttgttcaaacaagattgaattgagaaacagcacaggtt |
29005487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University